Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 5.3e-81 304.3 152 100.0
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 2.7e-61 238.8 186 68.8
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 1.8e-60 236.1 186 67.2
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 3.0e-60 235.3 184 72.3
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 3.0e-60 235.3 184 72.3
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 3.9e-60 235.0 186 67.2
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 6.7e-60 234.2 199 65.8
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 1.9e-59 232.6 184 71.7
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 1.9e-59 232.6 186 66.7
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 7.4e-59 230.7 184 71.2
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 6.9e-57 224.2 193 64.8
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 2.7e-53 212.2 174 69.0
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 3.6e-53 211.8 174 69.5
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 4.6e-53 211.5 188 63.8
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 4.5e-40 168.3 203 50.2
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 3.6e-37 158.7 164 59.8
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 1.8e-36 156.4 184 54.3
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 5.2e-36 154.8 184 53.8
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 5.2e-36 154.8 184 53.8
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 1.5e-35 153.3 184 54.3
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 1.5e-35 153.3 184 54.3
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 2.0e-35 152.9 191 52.9
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 1.7e-34 149.8 193 52.8
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 1.4e-33 146.7 192 52.1
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 2.4e-33 146.0 195 52.8
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 1.2e-32 143.7 176 52.3
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 7.7e-32 141.0 78 84.6
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 7.7e-32 141.0 189 46.6
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 1.3e-31 140.2 141 59.6
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 5.0e-31 138.3 161 55.3
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 2.5e-30 136.0 163 54.0
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 5.2e-28 128.3 192 47.9
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 8.8e-28 127.5 204 44.6
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 1.5e-27 126.7 192 47.4
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 1.5e-27 126.7 192 47.4
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 3.4e-27 125.6 200 46.5
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 2.8e-26 122.5 156 53.2
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 2.8e-26 122.5 169 48.5
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 3.7e-26 122.1 198 42.4
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 4.8e-26 121.7 199 46.2
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 4.8e-26 121.7 200 47.5
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 6.3e-26 121.3 204 43.1
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 8.3e-26 120.9 160 53.8
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 8.3e-26 120.9 207 41.5
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 8.3e-26 120.9 198 42.4
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 1.4e-25 120.2 204 43.1
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 1.4e-25 120.2 203 41.9
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 1.2e-24 117.1 199 44.2
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 3.5e-24 115.5 173 45.1
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 4.5e-24 115.2 186 45.7
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.0e-23 114.0 201 39.8
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.0e-23 114.0 201 39.8
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 1.0e-23 114.0 202 44.6
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 1.3e-23 113.6 205 41.5
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 2.9e-23 112.5 194 42.8
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 5.0e-23 111.7 205 42.0
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 5.0e-23 111.7 205 39.5
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.5e-22 110.2 203 39.4
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 2.5e-22 109.4 206 40.3
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 7.2e-22 107.8 75 80.0
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 7.2e-22 107.8 203 41.4
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 7.2e-22 107.8 192 43.2
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 2.8e-21 105.9 199 37.7
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 3.6e-21 105.5 203 40.4
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 4.7e-21 105.1 194 41.8
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 8.0e-21 104.4 199 41.7
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 8.0e-21 104.4 202 40.6
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 1.0e-20 104.0 224 36.6
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 2.3e-20 102.8 196 37.2
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 4.0e-20 102.1 180 40.0
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 4.0e-20 102.1 180 41.1
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 6.8e-20 101.3 177 45.8
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 6.8e-20 101.3 229 36.7
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 4.4e-19 98.6 202 36.6
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 4.4e-19 98.6 199 37.7
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 5.7e-19 98.2 212 37.7
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 7.5e-19 97.8 200 39.5
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 9.8e-19 97.4 197 39.1
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 1.7e-18 96.7 183 42.1
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 1.7e-18 96.7 67 80.6
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.7e-18 96.7 200 39.0
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.7e-18 96.7 196 39.3
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 2.2e-18 96.3 114 53.5
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 4.9e-18 95.1 158 42.4
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.9e-18 95.1 196 39.8
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 5.4e-17 91.7 207 36.7
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 5.4e-17 91.7 201 39.3
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 1.2e-16 90.5 199 33.2
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 2.0e-16 89.7 201 35.3
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.7e-16 89.4 199 38.7
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 3.5e-16 89.0 202 38.1
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 3.5e-16 89.0 212 35.4
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 3.5e-16 89.0 214 36.9
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 4.5e-16 88.6 207 38.6
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 4.5e-16 88.6 199 38.2
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 5.9e-16 88.2 210 36.7
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 5.9e-16 88.2 205 38.0
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 5.9e-16 88.2 200 41.0
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 7.8e-16 87.8 208 38.0
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 7.8e-16 87.8 202 37.1
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.0e-15 87.4 208 38.5
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 1.3e-15 87.0 208 39.4
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.7e-15 86.7 208 38.9
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.7e-15 86.7 171 40.9
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 1.7e-15 86.7 208 35.6
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 2.3e-15 86.3 181 40.3
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 2.3e-15 86.3 194 34.0
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 2.9e-15 85.9 177 38.4
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 2.9e-15 85.9 208 38.5
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 5.0e-15 85.1 193 34.7
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 6.6e-15 84.7 197 38.1
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 6.6e-15 84.7 194 36.6
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 1.1e-14 84.0 198 36.9
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 1.1e-14 84.0 201 35.8
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 1.5e-14 83.6 177 41.2
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.9e-14 83.2 219 37.0
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 2.5e-14 82.8 55 80.0
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 5.6e-14 81.6 198 35.9
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 5.6e-14 81.6 158 40.5
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 7.3e-14 81.3 130 40.0
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 7.3e-14 81.3 203 35.5
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 7.3e-14 81.3 204 37.3
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 9.5e-14 80.9 200 36.5
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 1.2e-13 80.5 203 36.0
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 1.2e-13 80.5 142 39.4
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 1.6e-13 80.1 126 42.1
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 1.6e-13 80.1 209 34.9
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.1e-13 79.7 219 35.6
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 3.6e-13 79.0 118 43.2
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.6e-13 79.0 207 36.2
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 6.1e-13 78.2 203 34.5
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 6.1e-13 78.2 204 36.3
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.4e-12 77.0 201 37.8
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 2.3e-12 76.3 208 34.1
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 2.3e-12 76.3 200 37.0
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 3.0e-12 75.9 215 34.9
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 3.0e-12 75.9 210 33.3
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 4.0e-12 75.5 210 35.7
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 5.2e-12 75.1 180 35.6
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 8.9e-12 74.3 168 38.1
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 8.9e-12 74.3 196 36.7
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 1.2e-11 73.9 148 41.9
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 1.5e-11 73.6 211 37.0
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 3.4e-11 72.4 214 32.7
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 5.7e-11 71.6 179 38.5
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 1.7e-10 70.1 192 37.0
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 8.3e-10 67.8 185 33.0
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.4e-09 67.0 196 34.2
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 7.0e-09 64.7 193 33.7
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 7.0e-09 64.7 201 30.8
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 7.0e-09 64.7 137 38.7
Psat7g014640 Pisum sativum HOM05D003644 ORTHO05D004305 9.2e-09 64.3 140 40.0
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.2e-08 63.9 85 48.2
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 2.0e-08 63.2 110 42.7
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 3.5e-08 62.4 163 35.6
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.3e-07 60.5 125 36.8
Os01g0676900 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 1.7e-07 60.1 166 37.3
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.5e-06 57.0 182 30.8
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 4.3e-06 55.5 203 32.0
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 5.6e-06 55.1 141 36.2
BraA03t14907Z Brassica rapa HOM05D000411 ORTHO05D000310 7.3e-06 54.7 47 66.0
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 7.3e-06 54.7 99 38.4


User provided reference genes

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