Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10026210m.g Eutrema salsugineum HOM05D005907 ORTHO05D007033 1.5e-116 422.9 217 100.0
AT4G19370 Arabidopsis thaliana HOM05D005907 ORTHO05D007033 7.5e-97 357.5 220 85.0
Carub.0007s2186 Capsella rubella HOM05D005907 ORTHO05D007033 4.4e-89 331.6 220 80.9
BcaC09g51418 Brassica carinata HOM05D005907 ORTHO05D007033 2.4e-87 325.9 213 78.4
C01p13330 Brassica napus HOM05D005907 ORTHO05D007033 2.4e-87 325.9 213 78.4
BolC1t01308H Brassica oleracea HOM05D005907 ORTHO05D007033 2.4e-87 325.9 213 78.4
A01p11320 Brassica napus HOM05D005907 ORTHO05D007033 1.6e-86 323.2 213 77.9
BraA01t01076Z Brassica rapa HOM05D005907 ORTHO05D007033 1.6e-86 323.2 213 77.9
Sp4g03880 Schrenkiella parvula HOM05D005907 ORTHO05D007033 3.6e-83 312.0 187 85.0
AL7G34790 Arabidopsis lyrata HOM05D005907 ORTHO05D007033 8.0e-83 310.8 220 74.5
BcaNung01784 Brassica carinata HOM05D005907 ORTHO05D007033 1.1e-79 300.4 215 72.6
CARHR226160 Cardamine hirsuta HOM05D005907 ORTHO05D007033 1.9e-79 299.7 220 72.7
Sp7g17980 Schrenkiella parvula HOM05D005907 ORTHO05D007033 1.2e-78 297.0 163 89.0
Aa31LG6G1970 Aethionema arabicum HOM05D005907 ORTHO05D007033 8.3e-72 274.2 225 64.0
THA.LOC104806200 Tarenaya hassleriana HOM05D005907 ORTHO05D007033 2.1e-59 233.0 215 59.5
Atru.chr8.2614 Acer truncatum HOM05D005907 ORTHO05D007033 9.6e-36 154.5 174 44.8
Lalb_Chr09g0325061 Lupinus albus HOM05D005907 ORTHO05D007033 2.4e-34 149.8 166 46.4
Ciclev10012886m.g Citrus clementina HOM05D005907 ORTHO05D007033 3.4e-33 146.0 175 44.0
Thhalv10008873m.g Eutrema salsugineum HOM05D005907 ORTHO05D007033 4.5e-33 145.6 150 46.0
CARHR031020 Cardamine hirsuta HOM05D005907 ORTHO05D007033 1.3e-32 144.1 166 47.0
Actinidia01244 Actinidia chinensis HOM05D005907 ORTHO05D007033 2.2e-32 143.3 153 47.1
Cfa012308 Carpinus fangiana HOM05D005907 ORTHO05D007033 2.9e-32 142.9 157 44.6
Oeu046770.1 Olea europaea HOM05D005907 ORTHO05D007033 3.8e-32 142.5 150 46.7
Lj2g0019236 Lotus japonicus HOM05D005907 ORTHO05D007033 8.4e-32 141.4 166 47.0
CiPaw.11G074000 Carya illinoinensis HOM05D005907 ORTHO05D007033 1.1e-31 141.0 174 41.4
Lalb_Chr05g0215181 Lupinus albus HOM05D005907 ORTHO05D007033 1.1e-31 141.0 169 44.4
RcHm_v2.0_Chr7g0215261 Rosa chinensis HOM05D005907 ORTHO05D007033 1.1e-31 141.0 181 43.1
Duzib205G2043 Durio zibethinus HOM05D005907 ORTHO05D007033 1.4e-31 140.6 166 44.6
arahy.Tifrunner.gnm1.ann1.4G5U2W Arachis hypogaea HOM05D005907 ORTHO05D007033 1.9e-31 140.2 166 46.4
arahy.Tifrunner.gnm1.ann1.Y9HS7A Arachis hypogaea HOM05D005907 ORTHO05D007033 1.9e-31 140.2 166 46.4
Thecc.03G320600 Theobroma cacao HOM05D005907 ORTHO05D007033 1.9e-31 140.2 175 44.6
TWI60G0533 Tripterygium wilfordii HOM05D005907 ORTHO05D007033 1.9e-31 140.2 170 45.3
Peaxi162Scf00876g00429 Petunia axillaris HOM05D005907 ORTHO05D007033 2.5e-31 139.8 164 43.3
Sp1g27370 Schrenkiella parvula HOM05D005907 ORTHO05D007033 4.2e-31 139.0 155 46.5
Psat2g145040 Pisum sativum HOM05D005907 ORTHO05D007033 9.3e-31 137.9 167 44.3
COL.COLO4_16745 Corchorus olitorius HOM05D005907 ORTHO05D007033 1.2e-30 137.5 163 41.7
TPR.G8986 Trifolium pratense HOM05D005907 ORTHO05D007033 1.2e-30 137.5 167 44.3
AL1G45790 Arabidopsis lyrata HOM05D005907 ORTHO05D007033 2.1e-30 136.7 150 47.3
Medtr5g025640 Medicago truncatula HOM05D005907 ORTHO05D007033 2.7e-30 136.3 166 43.4
Sed0007709 Sechium edule HOM05D005907 ORTHO05D007033 2.7e-30 136.3 156 44.9
Carub.0001s3002 Capsella rubella HOM05D005907 ORTHO05D007033 3.5e-30 136.0 157 46.5
Gorai.004G176900 Gossypium raimondii HOM05D005907 ORTHO05D007033 3.5e-30 136.0 167 46.1
Manes.17G003749 Manihot esculenta HOM05D005907 ORTHO05D007033 6.0e-30 135.2 155 43.9
Aa31LG2G14390 Aethionema arabicum HOM05D005907 ORTHO05D007033 7.9e-30 134.8 175 44.0
A08p10440 Brassica napus HOM05D005907 ORTHO05D007033 7.9e-30 134.8 167 43.1
ClCG07G011130 Citrullus lanatus HOM05D005907 ORTHO05D007033 1.0e-29 134.4 163 41.1
Cc08_g05990 Coffea canephora HOM05D005907 ORTHO05D007033 1.0e-29 134.4 154 45.5
Lalb_Chr16g0380441 Lupinus albus HOM05D005907 ORTHO05D007033 1.3e-29 134.0 164 42.7
CSS0017808 Camellia sinensis var. sinensis HOM05D005907 ORTHO05D007033 1.8e-29 133.7 154 41.6
Migut.A00472 Erythranthe guttata HOM05D005907 ORTHO05D007033 1.8e-29 133.7 152 42.1
TAR636G1547 Trochodendron aralioides HOM05D005907 ORTHO05D007033 1.8e-29 133.7 165 42.4
CsaV3_4G007120 Cucumis sativus L. HOM05D005907 ORTHO05D007033 2.3e-29 133.3 163 41.1
BcaB04g18131 Brassica carinata HOM05D005907 ORTHO05D007033 3.0e-29 132.9 151 43.0
Hund14310 Selenicereus undatus HOM05D005907 ORTHO05D007033 5.1e-29 132.1 162 40.7
VMungo1215G2629 Vigna mungo HOM05D001324 ORTHO05D001220 5.1e-29 132.1 164 42.7
FAN04G3107 Fragaria x ananassa HOM05D005907 ORTHO05D007033 1.1e-28 131.0 176 39.8
FAN08G1334 Fragaria x ananassa HOM05D005907 ORTHO05D007033 1.1e-28 131.0 176 40.9
CAN.G998.7 Capsicum annuum HOM05D005907 ORTHO05D007033 1.9e-28 130.2 164 40.9
FvH4_5g24980 Fragaria vesca HOM05D005907 ORTHO05D007033 1.9e-28 130.2 149 43.0
FAN18G3850 Fragaria x ananassa HOM05D005907 ORTHO05D007033 1.9e-28 130.2 149 43.0
Oeu047809.2 Olea europaea HOM05D005907 ORTHO05D007033 2.5e-28 129.8 165 39.4
Rhsim11G0037900 Rhododendron simsii HOM05D005907 ORTHO05D007033 2.5e-28 129.8 150 40.7
BraA08t33042Z Brassica rapa HOM05D005907 ORTHO05D007033 5.7e-28 128.6 174 41.4
Glyma.09G218300 Glycine max HOM05D005907 ORTHO05D007033 7.4e-28 128.3 155 44.5
Gohir.D08G169700 Gossypium hirsutum HOM05D005907 ORTHO05D007033 7.4e-28 128.3 167 45.5
Medtr8g072220 Medicago truncatula HOM05D005907 ORTHO05D007033 1.3e-27 127.5 154 46.1
Nn1g09337 Nelumbo nucifera HOM05D005907 ORTHO05D007033 1.3e-27 127.5 161 42.2
Gohir.A08G148600 Gossypium hirsutum HOM05D005907 ORTHO05D007033 1.6e-27 127.1 164 45.7
Lj3A1053G42 Lonicera japonica HOM05D005907 ORTHO05D007033 1.6e-27 127.1 151 42.4
PGR031G0343 Punica granatum HOM05D005907 ORTHO05D007033 2.1e-27 126.7 169 43.2
BcaC07g37737 Brassica carinata HOM05D005907 ORTHO05D007033 2.8e-27 126.3 150 40.7
BolC8t48118H Brassica oleracea HOM05D005907 ORTHO05D007033 2.8e-27 126.3 150 40.7
Duzib068G0478 Durio zibethinus HOM05D005907 ORTHO05D007033 2.8e-27 126.3 175 43.4
Glyma.01G153000 Glycine max HOM05D005907 ORTHO05D007033 2.8e-27 126.3 164 42.1
Nn3g19120 Nelumbo nucifera HOM05D005907 ORTHO05D007033 3.7e-27 125.9 154 42.2
Sopen08g023890 Solanum pennellii HOM05D005907 ORTHO05D007033 3.7e-27 125.9 157 40.1
Phvul.002G122500 Phaseolus vulgaris HOM05D005907 ORTHO05D007033 4.8e-27 125.6 153 43.8
Potri.004G235000 Populus trichocarpa HOM05D005907 ORTHO05D007033 4.8e-27 125.6 157 42.0
ECA233G3754 Erigeron canadensis HOM05D005907 ORTHO05D007033 1.1e-26 124.4 172 37.2
Gohir.D12G203800 Gossypium hirsutum HOM05D005907 ORTHO05D007033 1.1e-26 124.4 167 39.5
THA.LOC104814387 Tarenaya hassleriana HOM05D005907 ORTHO05D007033 1.1e-26 124.4 165 39.4
AT1G31720 Arabidopsis thaliana HOM05D005907 ORTHO05D007033 1.8e-26 123.6 145 47.6
Nitab4.5_0000986g0090 Nicotiana tabacum HOM05D005907 ORTHO05D007033 1.8e-26 123.6 172 38.4
Prupe.5G013600 Prunus persica HOM05D005907 ORTHO05D007033 1.8e-26 123.6 184 40.2
TAR629G0350 Trochodendron aralioides HOM05D005907 ORTHO05D007033 2.4e-26 123.2 155 41.9
CANSAT35G1964 Cannabis sativa HOM05D005907 ORTHO05D007033 4.1e-26 122.5 155 43.9
Gorai.008G218600 Gossypium raimondii HOM05D005907 ORTHO05D007033 4.1e-26 122.5 167 38.9
MD06G1011300 Malus domestica HOM05D005907 ORTHO05D007033 4.1e-26 122.5 174 39.1
Solyc08g075290.2 Solanum lycopersicum HOM05D005907 ORTHO05D007033 5.3e-26 122.1 161 37.9
Cpa.g.c30909 Carica papaya HOM05D005907 ORTHO05D007033 6.9e-26 121.7 136 46.3
Glyma.16G076400 Glycine max HOM05D005907 ORTHO05D007033 6.9e-26 121.7 144 43.1
SalBow4G0438 Salvia bowleyana HOM05D005907 ORTHO05D007033 1.2e-25 120.9 168 39.3
HanXRQChr08g0233691 Helianthus annuus HOM05D005907 ORTHO05D007033 2.0e-25 120.2 173 35.8
MSTRG.25750 Avicennia marina HOM05D005907 ORTHO05D007033 3.4e-25 119.4 193 34.7
Eucgr.E01152 Eucalyptus grandis HOM05D005907 ORTHO05D007033 3.4e-25 119.4 170 39.4
PSO339G2078 Papaver somniferum HOM05D005907 ORTHO05D007033 3.4e-25 119.4 155 40.6
vmacro00100 Vaccinium macrocarpon HOM05D005907 ORTHO05D007033 3.4e-25 119.4 174 36.2
SalBow8G0159 Salvia bowleyana HOM05D005907 ORTHO05D007033 7.6e-25 118.2 157 40.1
GSVIVG01036890001 Vitis vinifera HOM05D005907 ORTHO05D007033 1.7e-24 117.1 174 37.4
Gohir.A12G201000 Gossypium hirsutum HOM05D005907 ORTHO05D007033 2.9e-24 116.3 169 39.1
VMungo0251G3198 Vigna mungo HOM05D005907 ORTHO05D007033 6.5e-24 115.2 145 42.1
ATR0568G210 Amborella trichopoda HOM05D005907 ORTHO05D007033 1.4e-23 114.0 151 43.7
Sed0019955 Sechium edule HOM05D005907 ORTHO05D007033 3.2e-23 112.8 153 39.9
Phvul.003G278300 Phaseolus vulgaris HOM05D005907 ORTHO05D007033 9.3e-23 111.3 119 46.2
SGA_v2.0_scaffold121G33056 Striga asiatica HOM05D005907 ORTHO05D007033 2.7e-22 109.8 159 38.4
Nitab4.5_0006244g0030 Nicotiana tabacum HOM05D005907 ORTHO05D007033 3.6e-22 109.4 170 37.6
Manes.15G184500 Manihot esculenta HOM05D005907 ORTHO05D007033 7.9e-22 108.2 146 39.7
unitig_37.g12906 Utricularia gibba HOM05D005907 ORTHO05D007033 2.3e-21 106.7 161 38.5
PGR042G1103 Punica granatum HOM05D005907 ORTHO05D007033 3.0e-21 106.3 163 36.8
CDE01G0013 Ceratophyllum demersum HOM05D005907 ORTHO05D007033 6.3e-19 98.6 156 36.5
Sc07g0008040 Simmondsia chinensis HOM05D005907 ORTHO05D007033 4.1e-18 95.9 117 43.6
Dinv37434 Davidia involucrata HOM05D005907 ORTHO05D007033 3.4e-17 92.8 104 40.4
Haze_08421 Corylus avellana HOM05D005907 ORTHO05D007033 2.2e-16 90.1 96 46.9
SEGI_02785 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 1.1e-15 87.8 141 37.6
EL10Ac5g12591 Beta vulgaris HOM05D005907 ORTHO05D007033 1.2e-14 84.3 158 34.8
Os02g0703300 Oryza sativa ssp. japonica HOM05D005907 ORTHO05D007033 1.2e-14 84.3 135 32.6
Psat4g109120 Pisum sativum HOM05D005907 ORTHO05D007033 1.0e-13 81.3 122 36.9
Peaxi162Scf00550g00429 Petunia axillaris HOM05D005907 ORTHO05D007033 3.0e-13 79.7 102 42.2
SEGI_15207 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 1.1e-12 77.8 179 27.9
Zm00001eb251950 Zea mays HOM05D005907 ORTHO05D007033 1.5e-12 77.4 121 35.5
Sed0021253 Sechium edule HOM05D005907 ORTHO05D007033 1.3e-11 74.3 118 33.9
ClCG11G016120 Citrullus lanatus HOM05D005907 ORTHO05D007033 1.1e-10 71.2 96 38.5
CSS0046349 Camellia sinensis var. sinensis HOM05D002819 ORTHO05D003207 3.1e-10 69.7 144 32.6
arahy.Tifrunner.gnm1.ann1.UI3LS8 Arachis hypogaea HOM05D005907 ORTHO05D007033 1.2e-09 67.8 71 42.3
Potri.019G048300 Populus trichocarpa HOM05D002819 ORTHO05D003207 1.2e-09 67.8 147 33.3
Actinidia18697 Actinidia chinensis HOM05D002819 ORTHO05D003207 2.6e-09 66.6 149 30.2
Sabra13G0071600 Salix brachista HOM05D002819 ORTHO05D003207 2.6e-09 66.6 147 33.3
CiPaw.06G020000 Carya illinoinensis HOM05D002819 ORTHO05D003207 3.4e-09 66.2 141 31.9
Nitab4.5_0000021g0320 Nicotiana tabacum HOM05D002819 ORTHO05D003207 5.9e-09 65.5 160 31.2
arahy.Tifrunner.gnm1.ann1.VB8HUC Arachis hypogaea HOM05D005907 ORTHO05D007033 1.0e-08 64.7 66 43.9
Duzib128G0634 Durio zibethinus HOM05D002819 ORTHO05D003207 1.0e-08 64.7 147 34.0
Atru.chr12.2014 Acer truncatum HOM05D002819 ORTHO05D003207 2.2e-08 63.5 168 31.5
Gohir.A02G139200 Gossypium hirsutum HOM05D002819 ORTHO05D003207 2.2e-08 63.5 149 34.9
Gohir.D03G049900 Gossypium hirsutum HOM05D002819 ORTHO05D003207 2.2e-08 63.5 149 34.9
Gorai.003G051400 Gossypium raimondii HOM05D002819 ORTHO05D003207 2.2e-08 63.5 149 34.9
arahy.Tifrunner.gnm1.ann1.VUM9KL Arachis hypogaea HOM05D002819 ORTHO05D003207 3.8e-08 62.8 149 30.2
ClCG01G005010 Citrullus lanatus HOM05D002819 ORTHO05D003207 3.8e-08 62.8 148 29.1
CsaV3_5G005270 Cucumis sativus L. HOM05D002819 ORTHO05D003207 3.8e-08 62.8 148 29.1
PGR042G3857 Punica granatum HOM05D002819 ORTHO05D003207 3.8e-08 62.8 166 31.3
arahy.Tifrunner.gnm1.ann1.QIP5TL Arachis hypogaea HOM05D002819 ORTHO05D003207 5.0e-08 62.4 149 30.2
Aqoxy3G02055 Aquilegia oxysepala HOM05D002819 ORTHO05D003207 6.5e-08 62.0 140 27.9
MELO3C005433.2 Cucumis melo HOM05D002819 ORTHO05D003207 8.5e-08 61.6 148 28.4
Migut.F00954 Erythranthe guttata HOM05D002819 ORTHO05D003207 8.5e-08 61.6 142 31.0
Actinidia28266 Actinidia chinensis HOM05D002819 ORTHO05D003207 1.4e-07 60.8 147 29.3
Haze_08422 Corylus avellana HOM05D005907 ORTHO05D007033 1.4e-07 60.8 64 42.2
Actinidia08734 Actinidia chinensis HOM05D002819 ORTHO05D003207 1.9e-07 60.5 148 31.8
Aqoxy2G03476 Aquilegia oxysepala HOM05D005907 ORTHO05D007033 1.9e-07 60.5 93 35.5
SEGI_27585 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 2.5e-07 60.1 160 27.5
MELO3C016217.2 Cucumis melo HOM05D005907 ORTHO05D007033 4.2e-07 59.3 57 47.4
AUR62028148 Chenopodium quinoa HOM05D002819 ORTHO05D003207 7.2e-07 58.5 155 31.6
Eucgr.K00096 Eucalyptus grandis HOM05D002819 ORTHO05D003207 1.2e-06 57.8 169 29.6
HanXRQChr15g0491051 Helianthus annuus HOM05D002819 ORTHO05D003207 1.2e-06 57.8 158 30.4
Lalb_Chr19g0139871 Lupinus albus HOM05D002819 ORTHO05D003207 1.2e-06 57.8 144 29.2
AL6G28260 Arabidopsis lyrata HOM05D002819 ORTHO05D003207 2.1e-06 57.0 154 27.9
CARHR196000 Cardamine hirsuta HOM05D002819 ORTHO05D003207 2.1e-06 57.0 142 28.9
Sc19g0000260 Simmondsia chinensis HOM05D002819 ORTHO05D003207 3.6e-06 56.2 142 31.0
Glyma.11G092900 Glycine max HOM05D002819 ORTHO05D003207 4.7e-06 55.8 149 30.9
arahy.Tifrunner.gnm1.ann1.93DHY7 Arachis hypogaea HOM05D005907 ORTHO05D007033 6.1e-06 55.5 56 46.4
ClCG11G016110 Citrullus lanatus HOM05D005907 ORTHO05D007033 6.1e-06 55.5 48 52.1
Nitab4.5_0009213g0030 Nicotiana tabacum HOM05D005907 ORTHO05D007033 6.1e-06 55.5 67 37.3
vmacro06492 Vaccinium macrocarpon HOM05D002819 ORTHO05D003207 6.1e-06 55.5 166 29.5
Eucgr.K00098 Eucalyptus grandis HOM05D002819 ORTHO05D003207 7.9e-06 55.1 169 32.0


User provided reference genes

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