Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10025843m.g Eutrema salsugineum HOM05D005964 ORTHO05D007242 4.1e-170 601.3 300 100.0
Sp7g17840 Schrenkiella parvula HOM05D005964 ORTHO05D007242 1.5e-151 539.7 300 90.0
BcaNung03076 Brassica carinata HOM05D005964 ORTHO05D007242 5.8e-148 527.7 300 88.3
BcaC09g51437 Brassica carinata HOM05D005964 ORTHO05D007242 6.4e-147 524.2 300 87.0
BcaNung04009 Brassica carinata HOM05D005964 ORTHO05D007242 8.4e-147 523.9 298 88.3
AL7G34950 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 1.2e-145 520.0 304 85.9
BolC7t45529H Brassica oleracea HOM05D005964 ORTHO05D007242 3.5e-145 518.5 313 84.7
A01p11100 Brassica napus HOM05D005964 ORTHO05D007242 4.6e-145 518.1 312 84.9
BraA01t01056Z Brassica rapa HOM05D005964 ORTHO05D007242 4.6e-145 518.1 312 84.9
C01p13130 Brassica napus HOM05D005964 ORTHO05D007242 3.0e-144 515.4 312 83.7
BolC1t01286H Brassica oleracea HOM05D005964 ORTHO05D007242 3.0e-144 515.4 312 83.7
BcaC06g30611 Brassica carinata HOM05D005964 ORTHO05D007242 2.5e-143 512.3 305 86.6
AT4G19140 Arabidopsis thaliana HOM05D005964 ORTHO05D007242 1.2e-142 510.0 304 84.2
CARHR226010 Cardamine hirsuta HOM05D005964 ORTHO05D007242 1.6e-142 509.6 304 86.2
Carub.0007s2201 Capsella rubella HOM05D005964 ORTHO05D007242 6.8e-141 504.2 305 82.0
BraA03t14264Z Brassica rapa HOM05D005964 ORTHO05D007242 1.1e-133 480.3 321 79.1
Aa31LG6G1830 Aethionema arabicum HOM05D005964 ORTHO05D007242 2.2e-131 472.6 312 75.6
C07p50270 Brassica napus HOM05D005964 ORTHO05D007242 3.8e-115 418.7 300 75.0
THA.LOC104811073 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 1.8e-112 409.8 297 70.7
A03p51750 Brassica napus HOM05D005964 ORTHO05D007242 2.1e-105 386.3 302 71.9
Thecc.03G317600 Theobroma cacao HOM05D005964 ORTHO05D007242 1.0e-88 330.9 295 54.9
Gohir.A03G000012 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.8e-88 330.1 295 55.6
Duzib205G1143 Durio zibethinus HOM05D005964 ORTHO05D007242 5.1e-88 328.6 295 55.6
Dinv28013 Davidia involucrata HOM05D005964 ORTHO05D007242 2.8e-86 322.8 289 55.7
THA.LOC104806194 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 4.1e-85 318.9 253 66.4
Gohir.A08G150100 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.2e-84 317.4 302 54.0
Gorai.004G178600 Gossypium raimondii HOM05D005964 ORTHO05D007242 1.6e-84 317.0 302 54.6
Gohir.D03G177900 Gossypium hirsutum HOM05D005964 ORTHO05D007242 2.6e-84 316.2 317 52.1
Gorai.003G187200 Gossypium raimondii HOM05D005964 ORTHO05D007242 2.6e-84 316.2 317 52.1
Ciclev10002048m.g Citrus clementina HOM05D005964 ORTHO05D007242 1.0e-83 314.3 290 52.4
Duzib084G0482 Durio zibethinus HOM05D005964 ORTHO05D007242 5.0e-83 312.0 295 54.9
Cfa012590 Carpinus fangiana HOM05D005964 ORTHO05D007242 9.4e-82 307.8 297 51.5
CANSAT21G0049 Cannabis sativa HOM05D005964 ORTHO05D007242 1.2e-81 307.4 281 54.8
Manes.17G003600 Manihot esculenta HOM05D005964 ORTHO05D007242 3.0e-80 302.8 303 51.2
CiPaw.11G103200 Carya illinoinensis HOM05D005964 ORTHO05D007242 1.5e-79 300.4 291 52.9
Potri.001G130900 Populus trichocarpa HOM05D005964 ORTHO05D007242 5.7e-79 298.5 295 52.5
MELO3C013795.2 Cucumis melo HOM05D005964 ORTHO05D007242 7.5e-79 298.1 297 50.5
CsaV3_3G001060 Cucumis sativus L. HOM05D005964 ORTHO05D007242 9.7e-79 297.7 297 50.5
Actinidia14743 Actinidia chinensis HOM05D005964 ORTHO05D007242 2.8e-78 296.2 298 52.0
Atru.chr6.1471 Acer truncatum HOM05D005964 ORTHO05D007242 3.7e-78 295.8 281 53.0
Prupe.5G020400 Prunus persica HOM05D005964 ORTHO05D007242 6.3e-78 295.0 296 50.3
Sed0000446 Sechium edule HOM05D005964 ORTHO05D007242 6.3e-78 295.0 297 50.2
Lj8A334G75 Lonicera japonica HOM05D005964 ORTHO05D007242 1.1e-77 294.3 295 52.2
Dinv22873 Davidia involucrata HOM05D005964 ORTHO05D007242 1.4e-77 293.9 281 53.0
Gohir.D08G171200 Gossypium hirsutum HOM05D005964 ORTHO05D007242 3.1e-77 292.7 258 56.6
Peaxi162Scf02295g00024 Petunia axillaris HOM05D005964 ORTHO05D007242 5.3e-77 292.0 291 55.0
Potri.003G103000 Populus trichocarpa HOM05D005964 ORTHO05D007242 1.2e-76 290.8 280 52.9
MD06G1015300 Malus domestica HOM05D005964 ORTHO05D007242 1.7e-75 287.0 295 50.2
MD00G1001800 Malus domestica HOM05D005964 ORTHO05D007242 3.8e-75 285.8 295 50.8
Oeu046805.1 Olea europaea HOM05D005964 ORTHO05D007242 8.5e-75 284.6 297 49.8
Nitab4.5_0000030g0090 Nicotiana tabacum HOM05D005964 ORTHO05D007242 1.1e-74 284.3 283 51.9
Hma1.2p1_0544F.1_g175520 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 4.2e-74 282.3 272 51.8
GSVIVG01022785001 Vitis vinifera HOM05D005964 ORTHO05D007242 4.2e-74 282.3 249 56.6
Nitab4.5_0002930g0010 Nicotiana tabacum HOM05D005964 ORTHO05D007242 5.5e-74 282.0 266 54.5
Actinidia18160 Actinidia chinensis HOM05D005964 ORTHO05D007242 3.6e-73 279.3 278 50.7
CSS0036776 Camellia sinensis var. sinensis HOM05D005964 ORTHO05D007242 6.1e-73 278.5 218 57.3
FAN18G2518 Fragaria x ananassa HOM05D005964 ORTHO05D007242 6.1e-73 278.5 276 49.3
RcHm_v2.0_Chr7g0213391 Rosa chinensis HOM05D005964 ORTHO05D007242 6.1e-73 278.5 295 47.8
Glyma.09G213600 Glycine max HOM05D005964 ORTHO05D007242 1.8e-72 276.9 292 49.3
FvH4_5g23960 Fragaria vesca HOM05D005964 ORTHO05D007242 5.2e-72 275.4 276 49.3
FAN13G2421 Fragaria x ananassa HOM05D005964 ORTHO05D007242 5.2e-72 275.4 276 49.3
Cc08_g05080 Coffea canephora HOM05D005964 ORTHO05D007242 8.8e-72 274.6 232 56.9
Lalb_Chr05g0215451 Lupinus albus HOM05D005964 ORTHO05D007242 2.0e-71 273.5 296 47.0
Sopen08g024420 Solanum pennellii HOM05D005964 ORTHO05D007242 4.4e-71 272.3 290 49.7
Glyma.01G149400 Glycine max HOM05D005964 ORTHO05D007242 5.7e-71 271.9 304 48.0
Solyc08g075770.3 Solanum lycopersicum HOM05D005964 ORTHO05D007242 5.7e-71 271.9 290 49.7
VMungo1215G0316 Vigna mungo HOM05D005964 ORTHO05D007242 9.8e-71 271.2 292 49.3
PGR042G2449 Punica granatum HOM05D005964 ORTHO05D007242 1.7e-70 270.4 291 48.5
Eucgr.E01230 Eucalyptus grandis HOM05D005964 ORTHO05D007242 2.2e-70 270.0 279 49.5
Eucgr.E01239 Eucalyptus grandis HOM05D005964 ORTHO05D007242 2.2e-70 270.0 279 49.5
arahy.Tifrunner.gnm1.ann1.NL6YXC Arachis hypogaea HOM05D005964 ORTHO05D007242 6.3e-70 268.5 275 50.2
arahy.Tifrunner.gnm1.ann1.PBCI2P Arachis hypogaea HOM05D005964 ORTHO05D007242 6.3e-70 268.5 275 50.2
TWI12G1028 Tripterygium wilfordii HOM05D005964 ORTHO05D007242 6.3e-70 268.5 258 53.9
Migut.E01349 Erythranthe guttata HOM05D005964 ORTHO05D007242 3.1e-69 266.2 268 51.1
Sabra03G0070200 Salix brachista HOM05D005964 ORTHO05D007242 3.1e-69 266.2 226 57.5
Psat2g142160 Pisum sativum HOM05D005964 ORTHO05D007242 4.1e-69 265.8 294 47.6
Medtr5g026860 Medicago truncatula HOM05D005964 ORTHO05D007242 9.1e-69 264.6 294 47.3
Lj2g0015502 Lotus japonicus HOM05D005964 ORTHO05D007242 4.5e-68 262.3 295 47.8
MSTRG.1771 Avicennia marina HOM05D005964 ORTHO05D007242 1.3e-67 260.8 299 46.5
ECA240G3292 Erigeron canadensis HOM05D005964 ORTHO05D007242 1.3e-67 260.8 292 47.9
TAR381G0569 Trochodendron aralioides HOM05D005964 ORTHO05D007242 1.3e-67 260.8 295 45.1
HanXRQChr13g0412031 Helianthus annuus HOM05D005964 ORTHO05D007242 1.7e-67 260.4 291 48.5
Lsat_1_v5_gn_5_58981 Lactuca sativa HOM05D005964 ORTHO05D007242 6.5e-67 258.5 293 47.4
TPR.G17260 Trifolium pratense HOM05D005964 ORTHO05D007242 9.4e-66 254.6 286 47.2
unitig_899.g14736 Utricularia gibba HOM05D005964 ORTHO05D007242 1.8e-64 250.4 269 49.8
Rhsim07G0138900 Rhododendron simsii HOM05D005964 ORTHO05D007242 6.8e-64 248.4 222 52.7
Sc01g0007030 Simmondsia chinensis HOM05D005964 ORTHO05D007242 3.4e-63 246.1 260 49.2
EL10Ac5g11971 Beta vulgaris HOM05D005964 ORTHO05D007242 2.8e-62 243.0 276 45.7
MBI04_g27277_MAGBIO Magnolia biondii HOM05D005964 ORTHO05D007242 4.5e-60 235.7 290 43.1
AUR62018605 Chenopodium quinoa HOM05D005964 ORTHO05D007242 7.7e-60 235.0 236 48.7
SGA_v2.0_scaffold111G31365 Striga asiatica HOM05D005964 ORTHO05D007242 1.0e-59 234.6 265 47.5
Hma1.2p1_0544F.1_g175510 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 5.6e-58 228.8 201 58.2
AUR62007382 Chenopodium quinoa HOM05D005964 ORTHO05D007242 9.5e-58 228.0 222 49.5
Phvul.002G128700 Phaseolus vulgaris HOM05D005964 ORTHO05D007242 2.1e-57 226.9 225 51.6
QL12p001050 Quercus lobata HOM05D005964 ORTHO05D007242 1.4e-56 224.2 208 56.7
Aqoxy7G00888 Aquilegia oxysepala HOM05D005964 ORTHO05D007242 1.2e-55 221.1 270 43.7
Nn1g02066 Nelumbo nucifera HOM05D005964 ORTHO05D007242 1.2e-55 221.1 183 59.0
ClCG10G001030 Citrullus lanatus HOM05D005964 ORTHO05D007242 1.5e-55 220.7 297 41.8
FAN18G4345 Fragaria x ananassa HOM05D005964 ORTHO05D007242 5.7e-55 218.8 182 58.8
HanXRQChr03g0081171 Helianthus annuus HOM05D005964 ORTHO05D007242 7.5e-55 218.4 271 45.0
SalBow8G2874 Salvia bowleyana HOM05D005964 ORTHO05D007242 1.1e-53 214.5 232 49.1
arahy.Tifrunner.gnm1.ann1.MDU2JP Arachis hypogaea HOM05D005964 ORTHO05D007242 1.4e-53 214.2 267 42.7
PSO675G7054 Papaver somniferum HOM05D005964 ORTHO05D007242 2.4e-53 213.4 281 40.9
PSO717G0069 Papaver somniferum HOM05D005964 ORTHO05D007242 9.2e-53 211.5 236 44.9
Sabra01G0101200 Salix brachista HOM05D005964 ORTHO05D007242 4.6e-52 209.1 236 48.3
vmacro14234 Vaccinium macrocarpon HOM05D005964 ORTHO05D007242 4.6e-52 209.1 314 37.6
DCAR_008183 Daucus carota HOM05D005964 ORTHO05D007242 6.6e-51 205.3 273 41.4
Os04g0600400 Oryza sativa ssp. japonica HOM05D005964 ORTHO05D007242 3.3e-50 203.0 261 44.1
Hund11143 Selenicereus undatus HOM05D005964 ORTHO05D007242 1.2e-49 201.1 394 33.5
Zm00001eb071860 Zea mays HOM05D005964 ORTHO05D007242 4.7e-49 199.1 279 42.7
MSTRG.13905 Avicennia marina HOM05D005964 ORTHO05D007242 3.4e-47 193.0 200 52.5
AL8G21390 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 4.1e-45 186.0 138 67.4
CDE12G0810 Ceratophyllum demersum HOM05D005964 ORTHO05D007242 4.3e-42 176.0 243 38.7
PGSC0003DMG400030871 Solanum tuberosum HOM05D005964 ORTHO05D007242 1.1e-40 171.4 173 46.2
ATR0829G145 Amborella trichopoda HOM05D005964 ORTHO05D007242 8.9e-40 168.3 178 47.2
Ah.12g055850 Amaranthus hybridus HOM05D005964 ORTHO05D007242 2.2e-38 163.7 179 41.9
SEGI_32375 Sequoiadendron giganteum HOM05D005964 ORTHO05D007242 2.5e-34 150.2 175 44.0
PSO717G0022 Papaver somniferum HOM05D005964 ORTHO05D007242 2.8e-33 146.7 153 49.7
Cpa.g.sc90.42 Carica papaya HOM05D005964 ORTHO05D007242 9.9e-31 138.3 82 73.2
HPP92_021116 Vanilla planifolia HOM05D005964 ORTHO05D007242 1.1e-29 134.8 188 41.5
Mapoly0153s0025 Marchantia polymorpha HOM05D005964 ORTHO05D007242 3.0e-19 100.1 279 29.7
Pp3c6_11480 Physcomitrium patens HOM05D005964 ORTHO05D007242 3.3e-18 96.7 228 30.7
Haze_08067 Corylus avellana HOM05D005964 ORTHO05D007242 1.2e-15 88.2 102 39.2
Haze_05991 Corylus avellana HOM05D005964 ORTHO05D007242 1.4e-13 81.3 171 36.8
Cpa.g.sc90.41 Carica papaya HOM05D005964 ORTHO05D007242 2.3e-11 73.9 44 77.3
AagrBONN_evm.TU.Sc2ySwM_344.1651 Anthoceros agrestis HOM05D005964 ORTHO05D007242 1.1e-10 71.6 91 38.5
Cpa.g.c47778 Carica papaya HOM05D005964 ORTHO05D007242 2.5e-10 70.5 40 70.0
Oeu042210.1 Olea europaea HOM05D005964 ORTHO05D007242 3.1e-08 63.5 50 46.0
CBR_g24057 Chara braunii HOM05D005964 ORTHO05D007242 5.3e-08 62.8 105 33.3


User provided reference genes

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