Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.3e-161 572.4 335 100.0
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 9.1e-102 374.4 343 70.3
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.1e-99 367.5 346 71.1
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 1.9e-99 366.7 347 69.7
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 5.4e-94 348.6 346 63.3
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.2e-82 310.8 331 69.5
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 3.3e-67 259.6 278 63.3
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 3.1e-65 253.1 344 52.3
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 1.5e-64 250.8 366 53.8
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 1.7e-63 247.3 277 65.3
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 1.4e-62 244.2 277 65.7
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 1.0e-60 238.0 355 49.0
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 2.5e-59 233.4 305 62.3
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.2e-58 231.1 393 52.2
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 3.6e-58 229.6 305 61.0
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.4e-57 227.6 379 52.2
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 2.9e-55 219.9 333 55.6
A03p63630 Brassica napus HOM05D004420 ORTHO05D005048 3.0e-52 209.9 333 53.5
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 3.0e-52 209.9 292 54.5
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.3e-50 204.5 324 55.2
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 4.8e-50 202.6 282 58.5
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 4.9e-47 192.6 305 50.2
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 6.4e-47 192.2 281 58.0
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 6.4e-47 192.2 281 58.0
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 2.3e-44 183.7 294 56.1
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 5.1e-44 182.6 295 52.9
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 1.5e-43 181.0 291 45.7
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 2.5e-43 180.3 394 42.4
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 3.3e-43 179.9 291 45.4
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 5.6e-43 179.1 283 53.4
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 1.6e-42 177.6 288 55.6
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 1.6e-42 177.6 288 55.6
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 4.8e-42 176.0 283 53.0
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 1.4e-41 174.5 392 38.3
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 9.0e-41 171.8 381 37.5
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 1.5e-40 171.0 383 38.9
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 7.6e-40 168.7 409 43.8
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 1.7e-39 167.5 396 40.4
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 2.2e-39 167.2 399 41.1
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 7.1e-38 162.2 338 45.3
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 2.1e-37 160.6 390 36.9
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 1.0e-36 158.3 388 40.2
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 1.3e-36 157.9 381 36.0
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 6.7e-36 155.6 355 35.8
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 7.4e-35 152.1 384 35.7
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 9.6e-35 151.8 389 33.7
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 9.6e-35 151.8 389 33.7
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 1.3e-34 151.4 380 34.2
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 1.3e-34 151.4 354 38.4
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 1.6e-34 151.0 391 41.7
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 8.2e-34 148.7 383 36.0
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 1.1e-33 148.3 387 38.8
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 2.4e-33 147.1 381 36.5
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 2.4e-33 147.1 390 34.1
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 3.1e-33 146.7 362 36.2
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 5.3e-33 146.0 381 37.5
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 6.9e-33 145.6 367 35.4
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 1.2e-32 144.8 385 34.5
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 1.2e-32 144.8 385 34.5
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 2.0e-32 144.1 388 34.3
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 3.4e-32 143.3 402 38.1
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 3.4e-32 143.3 390 34.6
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 3.4e-32 143.3 388 37.9
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 3.4e-32 143.3 368 34.5
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 3.4e-32 143.3 404 40.3
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 3.4e-32 143.3 390 38.2
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 4.5e-32 142.9 388 37.9
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 5.8e-32 142.5 388 37.6
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 7.6e-32 142.1 334 41.3
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 7.6e-32 142.1 398 37.9
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 1.3e-31 141.4 377 35.8
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 3.8e-31 139.8 391 38.6
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.5e-30 137.1 386 33.9
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 2.5e-30 137.1 380 37.9
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 2.5e-30 137.1 380 41.6
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 3.2e-30 136.7 387 37.5
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 3.2e-30 136.7 397 39.5
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 4.2e-30 136.3 389 32.6
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 5.5e-30 136.0 388 34.5
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 7.1e-30 135.6 387 35.1
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 7.1e-30 135.6 395 39.2
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 9.3e-30 135.2 388 32.7
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 2.1e-29 134.0 386 33.4
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.7e-29 133.7 398 39.7
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 4.6e-29 132.9 291 37.8
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 7.9e-29 132.1 313 36.7
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 7.9e-29 132.1 389 38.6
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 1.0e-28 131.7 389 33.2
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 1.3e-28 131.3 378 34.4
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 1.8e-28 131.0 386 34.2
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 2.3e-28 130.6 360 38.6
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 2.3e-28 130.6 344 40.1
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 8.7e-28 128.6 291 37.1
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 2.5e-27 127.1 376 32.4
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 2.5e-27 127.1 376 32.4
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 3.3e-27 126.7 401 32.4
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 4.3e-27 126.3 384 32.0
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 7.4e-27 125.6 386 34.2
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 3.7e-26 123.2 376 34.3
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 1.1e-25 121.7 393 32.8
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 3.1e-25 120.2 408 32.8
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 4.1e-25 119.8 359 32.9
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 4.1e-25 119.8 382 32.2
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 9.0e-25 118.6 384 31.5
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.6e-24 117.1 386 31.6
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 2.6e-24 117.1 392 31.6
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 3.4e-24 116.7 320 37.8
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 4.5e-24 116.3 320 37.8
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 7.6e-24 115.5 403 32.0
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.2e-23 114.0 386 31.6
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 3.8e-23 113.2 320 39.1
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 5.0e-23 112.8 343 32.4
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 6.5e-23 112.5 406 31.5
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.1e-22 111.7 321 38.9
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 1.1e-22 111.7 343 32.1
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 1.1e-22 111.7 387 35.4
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.9e-22 110.9 390 31.8
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.9e-22 110.9 320 37.5
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 1.9e-22 110.9 395 30.1
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 1.2e-21 108.2 387 31.0
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 1.2e-21 108.2 357 33.1
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 2.1e-21 107.5 391 29.9
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 7.9e-21 105.5 381 32.3
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 1.0e-20 105.1 368 29.3
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.0e-20 105.1 141 68.8
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 1.0e-20 105.1 393 29.3
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 1.4e-20 104.8 334 31.4
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 2.3e-20 104.0 393 33.3
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 2.3e-20 104.0 348 31.9
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 3.9e-20 103.2 395 28.4
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 5.1e-20 102.8 399 29.3
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 5.7e-19 99.4 352 29.8
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 9.7e-19 98.6 346 30.9
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 2.2e-18 97.4 379 30.3
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 2.8e-18 97.1 384 29.2
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 4.8e-18 96.3 242 35.5
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 6.3e-18 95.9 295 34.6
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 1.8e-17 94.4 390 27.4
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 9.1e-17 92.0 190 37.9
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 3.4e-16 90.1 282 31.2
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 3.4e-16 90.1 324 31.2
A07p03430 Brassica napus HOM05D004420 ORTHO05D005048 4.5e-16 89.7 209 37.8
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 5.9e-16 89.4 374 30.5
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 1.7e-15 87.8 334 32.0
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 1.7e-15 87.8 383 30.0
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 1.7e-15 87.8 383 30.0
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 3.8e-15 86.7 143 42.7
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 6.5e-15 85.9 322 32.0
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 1.1e-14 85.1 320 30.3
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 1.9e-14 84.3 324 30.2
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.2e-13 81.6 392 27.3
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 3.6e-13 80.1 338 30.2
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.9e-12 76.6 327 28.1
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 2.8e-10 70.5 323 29.1
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 1.1e-09 68.6 376 26.1
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 1.1e-09 68.6 244 30.3
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 2.0e-08 64.3 233 30.0
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 4.5e-08 63.2 320 29.1
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 6.5e-07 59.3 154 35.1
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 1.1e-06 58.5 257 30.7
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 1.4e-06 58.2 239 32.2


User provided reference genes

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