Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 5.1e-196 687.6 351 100.0
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 1.0e-140 503.8 362 77.1
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 1.3e-138 496.9 360 79.2
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 1.4e-137 493.4 363 74.9
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 2.7e-136 489.2 364 78.6
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 7.3e-134 481.1 359 77.7
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 1.2e-115 420.6 364 70.6
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 7.1e-113 411.4 354 68.4
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 2.1e-112 409.8 369 66.9
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 3.9e-111 405.6 351 67.5
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 5.1e-111 405.2 350 68.6
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 5.1e-111 405.2 350 68.6
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 2.8e-109 399.4 347 67.7
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 9.3e-105 384.4 383 64.0
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 8.7e-103 377.9 410 59.8
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 1.1e-92 344.4 369 59.9
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 3.8e-90 335.9 374 55.6
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 4.3e-86 322.4 262 68.7
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 2.1e-80 303.5 385 51.2
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 6.3e-69 265.4 494 41.5
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 4.6e-64 249.2 391 46.3
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 6.7e-63 245.4 391 45.5
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 7.4e-62 241.9 399 45.4
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 1.3e-61 241.1 402 46.0
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 1.7e-61 240.7 405 45.4
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 1.2e-59 234.6 401 45.1
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 3.8e-58 229.6 394 44.2
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 1.6e-56 224.2 394 43.9
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 2.1e-56 223.8 354 47.2
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 7.9e-56 221.9 409 43.5
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 8.8e-55 218.4 435 40.5
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 2.0e-54 217.2 399 42.9
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 3.3e-54 216.5 403 41.9
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 3.3e-54 216.5 376 44.7
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 5.7e-54 215.7 402 43.8
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 5.9e-51 205.7 376 45.2
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 5.9e-51 205.7 419 42.0
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 5.9e-51 205.7 392 42.6
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 7.7e-51 205.3 382 43.5
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 7.7e-51 205.3 382 43.5
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 1.0e-50 204.9 398 43.2
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 2.2e-50 203.8 401 42.1
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 6.5e-50 202.2 399 43.4
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 1.5e-49 201.1 344 45.9
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 4.2e-49 199.5 385 42.6
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 7.2e-49 198.7 407 41.8
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 2.7e-48 196.8 400 42.0
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 6.1e-48 195.7 397 42.8
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 5.2e-47 192.6 408 41.9
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 5.7e-46 189.1 400 40.5
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 5.7e-46 189.1 416 40.4
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 5.7e-46 189.1 392 41.3
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 1.3e-45 188.0 410 39.3
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 1.7e-45 187.6 422 41.0
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 3.7e-45 186.4 396 41.4
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 3.7e-45 186.4 438 37.0
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 1.1e-44 184.9 397 43.3
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 1.8e-44 184.1 427 39.3
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 5.3e-44 182.6 387 41.3
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 7.0e-44 182.2 382 41.4
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 9.1e-44 181.8 386 40.7
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 1.2e-43 181.4 397 43.3
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 3.5e-43 179.9 338 44.4
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 5.9e-43 179.1 401 39.2
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 1.1e-41 174.9 401 41.9
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 1.5e-41 174.5 352 42.0
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 1.9e-41 174.1 337 43.0
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 4.2e-41 172.9 318 44.0
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 2.1e-40 170.6 436 37.6
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 2.7e-40 170.2 321 42.7
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 2.7e-40 170.2 323 42.7
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 4.7e-40 169.5 331 42.3
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 1.4e-39 167.9 350 43.7
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 3.0e-39 166.8 339 40.7
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 5.2e-39 166.0 312 43.3
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 6.8e-39 165.6 401 38.9
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 6.8e-39 165.6 394 37.3
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 6.8e-39 165.6 337 43.3
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 8.8e-39 165.2 379 39.8
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 2.0e-38 164.1 327 42.5
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 7.5e-38 162.2 360 40.3
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 9.8e-38 161.8 322 42.9
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 1.7e-37 161.0 331 41.7
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 2.8e-37 160.2 328 42.1
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 4.8e-37 159.5 385 41.8
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 8.3e-37 158.7 327 41.9
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 5.4e-36 156.0 329 40.4
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 7.0e-36 155.6 415 37.8
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 7.0e-36 155.6 473 33.8
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 2.7e-35 153.7 328 44.2
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 3.5e-35 153.3 334 40.7
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 4.5e-35 152.9 379 40.1
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 4.5e-35 152.9 328 41.2
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 5.9e-35 152.5 377 39.3
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 1.4e-31 141.4 323 41.2
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 1.8e-31 141.0 337 34.7
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 5.2e-31 139.4 400 37.2
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 8.8e-31 138.7 388 37.1
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 1.2e-30 138.3 418 38.8
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 1.2e-30 138.3 331 38.7
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 4.4e-30 136.3 383 37.9
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 3.1e-28 130.2 189 47.1
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 3.8e-26 123.2 316 38.0
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 5.0e-26 122.9 261 40.6
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 6.6e-26 122.5 281 40.6
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 1.2e-24 118.2 348 38.2
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 8.0e-24 115.5 329 37.1
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 1.2e-22 111.7 329 36.5
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 1.5e-22 111.3 338 35.5
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 2.2e-21 107.5 414 32.1
A03p58570 Brassica napus HOM05D005514 ORTHO05D006563 1.8e-20 104.4 127 55.9
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 7.0e-20 102.4 265 35.1
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 7.0e-20 102.4 258 36.8
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 9.2e-20 102.1 206 44.2
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 1.6e-19 101.3 249 37.8
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 7.8e-19 99.0 314 35.7
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 2.9e-18 97.1 247 40.1
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 5.0e-18 96.3 195 38.5
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 1.6e-16 91.3 164 39.6
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 4.4e-14 83.2 284 34.2
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 7.5e-14 82.4 307 30.9
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 2.2e-13 80.9 257 35.4
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 9.2e-12 75.5 281 31.7
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 1.0e-10 72.0 189 33.3
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 1.3e-10 71.6 177 37.9
AagrBONN_evm.TU.Sc2ySwM_344.197 Anthoceros agrestis HOM05D005514 ORTHO05D006563 1.4e-07 61.6 67 47.8
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 1.4e-07 61.6 70 42.9
BcaC08g47141 Brassica carinata HOM05D005514 ORTHO05D006563 3.1e-07 60.5 66 57.6
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 1.2e-06 58.5 398 29.6
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 9.8e-06 55.5 37 59.5


User provided reference genes

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