Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 2.5e-223 778.5 396 100.0
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 1.2e-193 679.9 396 86.9
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 5.0e-192 674.5 396 87.4
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 1.1e-191 673.3 396 87.9
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 3.3e-191 671.8 396 86.9
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 4.9e-171 604.7 396 76.8
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.4e-170 603.2 330 91.5
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 5.4e-170 601.3 396 77.3
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 7.8e-169 597.4 396 76.5
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 2.8e-166 589.0 396 76.3
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 2.8e-166 589.0 396 76.3
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 1.5e-164 583.2 406 74.9
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 3.8e-163 578.6 396 75.5
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 5.4e-162 574.7 401 74.8
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 9.3e-162 573.9 396 74.5
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 3.7e-158 562.0 397 72.8
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 5.8e-156 554.7 403 70.2
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.4e-154 550.1 395 72.4
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 2.2e-139 499.6 457 64.6
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 1.8e-136 490.0 298 83.2
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 1.9e-130 469.9 400 62.2
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 4.2e-130 468.8 399 59.9
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 4.4e-127 458.8 400 58.8
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 1.4e-125 453.8 399 58.6
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 1.8e-125 453.4 405 59.3
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 5.9e-124 448.4 404 57.9
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 2.9e-123 446.0 405 56.3
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 1.9e-122 443.4 395 58.7
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 9.4e-122 441.0 392 57.9
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 1.2e-121 440.7 392 58.2
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 4.7e-121 438.7 401 56.4
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 2.3e-120 436.4 393 56.0
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 8.8e-120 434.5 393 57.5
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 1.1e-119 434.1 413 55.0
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 1.1e-119 434.1 367 60.8
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 1.5e-119 433.7 400 58.2
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 2.2e-118 429.9 392 57.4
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.1e-117 427.6 405 56.8
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 1.8e-117 426.8 403 54.6
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 5.3e-117 425.2 405 53.6
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 7.0e-117 424.9 387 54.5
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 3.5e-116 422.5 399 57.1
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 3.5e-116 422.5 334 60.5
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 1.7e-115 420.2 391 55.2
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 3.8e-115 419.1 397 54.4
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.5e-114 417.2 387 55.0
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 1.5e-114 417.2 393 56.7
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 1.9e-114 416.8 380 56.3
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.5e-114 416.4 393 56.2
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 5.5e-114 415.2 391 55.2
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 2.1e-113 413.3 353 58.6
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 2.7e-113 412.9 387 53.2
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 4.7e-113 412.1 401 55.4
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 6.1e-113 411.8 405 52.6
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 1.8e-112 410.2 396 53.5
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 2.3e-112 409.8 323 60.7
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 1.2e-111 407.5 333 58.6
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 1.2e-111 407.5 384 52.9
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 1.5e-111 407.1 402 53.0
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 2.6e-111 406.4 395 52.2
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 3.3e-111 406.0 373 56.3
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 3.3e-111 406.0 369 54.2
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 1.7e-110 403.7 391 54.0
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 4.8e-110 402.1 419 53.5
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 2.4e-109 399.8 324 62.0
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 7.7e-108 394.8 315 60.0
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 7.7e-108 394.8 346 54.6
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 1.7e-107 393.7 322 60.9
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 3.8e-107 392.5 406 52.5
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 1.5e-106 390.6 321 57.0
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 7.2e-106 388.3 463 47.9
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 9.4e-106 387.9 396 50.0
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 9.4e-106 387.9 321 56.4
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 1.6e-105 387.1 378 51.1
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 4.7e-105 385.6 378 51.6
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 1.4e-104 384.0 297 60.9
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 1.4e-104 384.0 319 57.7
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 2.3e-104 383.3 298 60.1
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 3.4e-103 379.4 309 57.3
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.7e-102 377.1 378 49.7
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 2.2e-102 376.7 389 53.5
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 2.8e-102 376.3 321 54.2
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 2.8e-102 376.3 298 58.7
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.8e-102 376.3 378 48.9
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 6.3e-102 375.2 390 52.6
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 8.3e-102 374.8 338 55.3
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 1.1e-101 374.4 392 50.3
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 1.4e-101 374.0 331 57.4
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 9.1e-101 371.3 375 49.1
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 1.2e-100 370.9 395 48.4
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.6e-100 370.5 325 57.2
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.7e-100 369.8 369 49.3
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 3.5e-100 369.4 307 55.4
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 1.0e-99 367.9 388 52.6
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 4.2e-98 362.5 391 47.8
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 4.0e-96 355.9 416 45.7
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 4.4e-95 352.4 330 54.8
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 3.1e-93 346.3 388 46.6
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 1.2e-92 344.4 324 51.5
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 1.5e-90 337.4 357 47.1
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 2.8e-89 333.2 397 44.8
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 1.4e-88 330.9 316 52.8
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 1.8e-88 330.5 351 46.4
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 1.2e-87 327.8 316 49.4
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 3.7e-86 322.8 325 54.5
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.2e-79 301.2 411 42.3
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 1.5e-79 300.8 280 56.4
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 3.2e-77 293.1 275 54.9
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 8.6e-75 285.0 229 61.1
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 3.6e-73 279.6 361 44.0
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 6.2e-73 278.9 272 53.3
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 9.9e-71 271.6 282 51.8
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 8.9e-64 248.4 337 42.4
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 3.0e-59 233.4 254 49.6
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 2.8e-57 226.9 124 87.1
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 4.8e-49 199.5 285 40.4
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 1.1e-48 198.4 277 42.6
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 4.9e-46 189.5 222 57.7
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.5e-39 167.9 132 61.4
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 3.4e-39 166.8 305 33.4
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 9.3e-37 158.7 181 42.5
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 4.6e-36 156.4 330 28.8
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 3.7e-33 146.7 202 40.6
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 9.0e-32 142.1 117 59.8
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 1.1e-26 125.2 147 42.9
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 4.3e-26 123.2 213 35.7
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 2.4e-24 117.5 77 67.5
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.9e-22 110.5 68 70.6
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 1.6e-20 104.8 110 51.8
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 1.8e-19 101.3 254 26.0
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 8.8e-19 99.0 87 54.0
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 2.2e-17 94.4 349 22.6
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 6.5e-14 82.8 114 36.8
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 5.5e-13 79.7 89 44.9
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 9.7e-10 68.9 68 48.5
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 4.8e-09 66.6 311 21.9
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 4.1e-08 63.5 70 48.6
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.2e-06 57.8 38 63.2


User provided reference genes

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