Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 1.6e-238 828.9 407 100.0
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 9.7e-223 776.5 406 91.4
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 6.3e-222 773.9 408 91.9
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 3.0e-216 755.0 406 89.7
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 5.2e-216 754.2 406 89.9
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 6.7e-216 753.8 408 90.2
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 1.5e-215 752.7 408 90.2
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 4.4e-215 751.1 408 89.7
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 1.3e-214 749.6 408 90.0
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 6.3e-214 747.3 408 89.5
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 3.4e-191 671.8 405 80.0
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 1.7e-174 616.3 333 88.6
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 1.2e-172 610.1 409 70.9
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 4.6e-172 608.2 408 71.1
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 7.8e-172 607.4 409 70.4
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 5.0e-171 604.7 409 70.4
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 8.6e-171 604.0 410 71.0
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 7.3e-170 600.9 408 70.6
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 2.8e-169 599.0 403 72.0
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 1.1e-168 597.0 410 69.0
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 3.1e-168 595.5 411 70.6
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 8.9e-168 594.0 410 70.7
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 1.2e-167 593.6 416 67.1
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 1.2e-167 593.6 406 68.5
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 2.0e-167 592.8 403 68.7
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 2.2e-166 589.3 403 68.7
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 2.9e-166 589.0 403 68.7
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 3.7e-166 588.6 422 66.6
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 6.4e-166 587.8 410 68.0
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 9.2e-165 583.9 406 70.0
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 3.5e-164 582.0 404 68.8
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 6.0e-164 581.3 421 65.8
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 1.7e-163 579.7 413 67.8
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 3.0e-163 578.9 404 68.3
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 5.1e-163 578.2 403 68.5
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 6.6e-163 577.8 422 64.9
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 5.6e-162 574.7 406 67.2
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 7.3e-162 574.3 408 67.9
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 2.8e-161 572.4 408 67.6
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 4.7e-161 571.6 383 72.3
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 6.2e-161 571.2 406 66.0
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 8.1e-161 570.9 403 67.5
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 1.4e-160 570.1 406 67.2
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 3.1e-160 568.9 409 67.2
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 6.8e-160 567.8 419 65.4
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 1.2e-159 567.0 403 67.0
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 1.5e-159 566.6 407 66.6
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 7.6e-159 564.3 413 66.1
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 7.6e-159 564.3 402 65.4
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 2.9e-158 562.4 412 65.8
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 8.4e-158 560.8 403 65.8
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 1.4e-157 560.1 403 66.5
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 1.9e-157 559.7 403 66.0
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 3.2e-157 558.9 442 63.6
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 5.4e-157 558.1 404 65.1
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 9.2e-157 557.4 415 64.1
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 9.2e-157 557.4 410 67.1
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 1.6e-156 556.6 415 66.7
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 3.5e-156 555.4 294 87.4
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 3.5e-156 555.4 415 66.7
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 7.8e-156 554.3 407 66.3
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 3.0e-155 552.4 403 64.8
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 7.3e-154 547.7 404 65.3
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 9.6e-154 547.4 428 63.6
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 1.2e-153 547.0 381 69.0
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 5.2e-152 541.6 403 64.3
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 1.5e-151 540.0 402 63.7
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 2.0e-151 539.7 413 62.5
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 2.6e-151 539.3 404 64.9
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 1.7e-150 536.6 406 64.5
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 1.7e-150 536.6 400 62.8
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 2.9e-150 535.8 411 62.0
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 2.9e-150 535.8 403 63.8
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 2.9e-150 535.8 459 59.3
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 4.9e-150 535.0 416 63.7
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 4.9e-150 535.0 414 62.8
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 6.4e-150 534.6 403 63.5
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 1.1e-149 533.9 436 61.2
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 1.1e-149 533.9 417 61.6
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 3.2e-149 532.3 390 65.6
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 9.3e-149 530.8 393 66.7
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 1.6e-148 530.0 469 58.0
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 4.6e-148 528.5 396 62.1
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 1.0e-147 527.3 406 63.1
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.3e-147 526.9 420 61.0
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 2.3e-147 526.2 402 63.9
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 5.1e-147 525.0 400 61.5
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 8.7e-147 524.2 443 59.4
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 9.9e-143 510.8 406 60.6
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 4.6e-140 501.9 411 61.1
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 7.9e-140 501.1 400 64.2
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 2.3e-139 499.6 431 59.9
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.1e-138 497.3 329 71.4
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 7.1e-133 478.0 400 61.0
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 3.5e-132 475.7 403 58.8
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 1.6e-129 466.8 309 73.1
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 9.0e-128 461.1 285 71.2
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 1.3e-126 457.2 302 66.9
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 2.9e-126 456.1 307 67.4
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 1.4e-125 453.8 410 54.6
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 1.6e-121 440.3 335 61.5
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.0e-118 431.0 312 64.7
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 7.2e-117 424.9 399 55.9
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 3.6e-116 422.5 405 53.8
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.7e-113 413.7 420 51.0
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 8.2e-113 411.4 418 50.2
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 5.3e-112 408.7 416 49.0
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 5.9e-111 405.2 407 49.9
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 6.5e-102 375.2 312 60.9
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 6.7e-99 365.2 280 66.1
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 3.1e-96 356.3 316 52.8
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 5.9e-95 352.1 294 59.9
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 6.1e-84 315.5 278 61.2
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 2.1e-76 290.4 184 66.8
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 1.0e-70 271.6 449 36.3
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 6.4e-65 252.3 374 41.4
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 1.4e-64 251.1 214 51.9
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 2.3e-59 233.8 418 37.1
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 9.2e-56 221.9 555 30.8
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 4.1e-48 196.4 245 46.5
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 2.8e-44 183.7 192 47.9
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 1.8e-43 181.0 121 79.3
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 2.7e-39 167.2 134 60.4
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 3.6e-36 156.8 112 63.4
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 2.7e-31 140.6 104 60.6
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 3.0e-30 137.1 101 61.4
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 3.4e-26 123.6 256 34.4
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 4.2e-24 116.7 140 50.7
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 7.6e-18 95.9 106 43.4
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 7.6e-10 69.3 114 43.9
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 7.6e-10 69.3 43 72.1
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 4.2e-08 63.5 57 56.1
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 1.8e-06 58.2 38 65.8


User provided reference genes

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