Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 2.1e-260 901.7 429 100.0
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 3.5e-239 831.2 431 92.8
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 7.8e-239 830.1 428 92.8
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 4.3e-237 824.3 424 92.7
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 1.2e-236 822.8 428 91.8
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 4.7e-236 820.8 429 91.8
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 4.7e-236 820.8 429 91.8
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 1.4e-235 819.3 432 91.7
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 1.9e-232 808.9 417 91.6
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 1.6e-231 805.8 431 90.0
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 3.0e-230 801.6 432 89.4
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 2.0e-218 762.3 419 87.1
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 3.2e-200 701.8 395 83.3
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 5.0e-177 624.8 392 73.7
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 4.2e-176 621.7 407 72.0
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 5.5e-176 621.3 402 72.1
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 9.4e-176 620.5 384 74.2
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 1.6e-175 619.8 407 71.7
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 2.1e-175 619.4 406 71.2
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 2.7e-175 619.0 407 71.7
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 6.1e-175 617.8 400 71.8
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 1.0e-174 617.1 404 70.8
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 8.8e-174 614.0 428 68.2
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 1.1e-173 613.6 378 74.6
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 1.5e-173 613.2 426 68.5
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 3.3e-173 612.1 429 68.5
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 4.4e-173 611.7 423 68.3
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 2.8e-172 609.0 419 67.3
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 3.7e-172 608.6 406 70.2
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 6.3e-172 607.8 407 70.3
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 6.3e-172 607.8 406 68.0
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 1.8e-171 606.3 404 70.0
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 5.3e-171 604.7 405 69.6
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 5.3e-171 604.7 382 73.6
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 5.3e-171 604.7 411 68.9
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 7.0e-171 604.4 402 70.4
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 9.1e-171 604.0 405 69.6
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 5.9e-170 601.3 406 69.7
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 1.0e-169 600.5 380 72.4
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 1.7e-169 599.7 394 69.3
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 2.2e-169 599.4 438 66.4
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 8.5e-169 597.4 400 69.8
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 8.5e-169 597.4 405 68.9
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 9.4e-168 594.0 411 69.3
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 3.6e-167 592.0 382 71.7
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 1.4e-166 590.1 414 67.6
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.4e-166 590.1 378 72.2
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 2.3e-166 589.3 429 65.5
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 3.0e-166 589.0 436 65.6
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 8.8e-166 587.4 403 68.2
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 3.3e-165 585.5 430 66.0
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 9.7e-165 583.9 441 64.6
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 1.3e-164 583.6 403 67.2
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 2.8e-164 582.4 380 70.5
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 2.8e-164 582.4 380 70.5
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 4.8e-164 581.6 393 67.9
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 4.8e-164 581.6 420 66.2
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 6.3e-164 581.3 402 69.4
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 8.2e-164 580.9 389 68.6
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 8.2e-164 580.9 380 71.1
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 4.1e-163 578.6 381 71.1
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 7.0e-163 577.8 368 71.5
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 1.2e-162 577.0 402 66.7
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 2.0e-162 576.2 405 67.2
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 2.0e-162 576.2 429 65.0
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 2.6e-162 575.9 383 69.2
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 3.5e-162 575.5 413 65.9
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 1.3e-161 573.5 387 68.5
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 1.7e-161 573.2 370 71.4
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 2.9e-161 572.4 402 67.2
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 2.5e-160 569.3 396 68.7
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 5.5e-160 568.2 378 69.8
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 1.2e-159 567.0 430 64.4
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 2.7e-159 565.8 443 62.5
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 1.0e-158 563.9 413 64.9
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 1.8e-158 563.1 353 74.5
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 3.0e-158 562.4 356 73.3
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 5.2e-158 561.6 406 67.5
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 3.3e-157 558.9 460 61.3
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 9.7e-157 557.4 415 63.1
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 8.2e-156 554.3 418 65.1
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 3.2e-152 542.3 381 66.9
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 2.7e-151 539.3 413 64.2
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 3.1e-147 525.8 355 69.3
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 7.0e-147 524.6 365 66.3
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 2.0e-146 523.1 383 66.1
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 2.3e-145 519.6 350 68.9
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 4.7e-143 511.9 427 57.6
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 2.0e-141 506.5 357 68.3
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 3.9e-137 492.3 416 56.0
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 8.0e-135 484.6 340 67.4
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 4.9e-132 475.3 401 56.4
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 7.8e-130 468.0 376 60.4
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 7.8e-122 441.4 330 64.2
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 1.0e-121 441.0 402 56.2
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 1.1e-120 437.6 300 68.7
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 2.5e-120 436.4 303 68.6
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 1.2e-119 434.1 377 57.6
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 1.6e-119 433.7 355 56.3
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 2.3e-118 429.9 287 71.1
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 1.1e-115 421.0 363 53.2
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 1.0e-113 414.5 369 52.6
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 1.2e-90 337.8 245 66.1
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 7.4e-88 328.6 229 65.9
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 5.3e-86 322.4 278 56.1
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 5.8e-85 318.9 362 46.4
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 7.1e-83 312.0 299 53.5
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 3.0e-81 306.6 397 42.1
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 4.3e-80 302.8 179 77.1
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 7.6e-77 292.0 167 79.0
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 7.6e-77 292.0 167 79.0
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 1.3e-76 291.2 470 40.9
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.8e-65 254.2 146 78.8
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 1.2e-50 204.9 127 78.0
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 3.9e-49 199.9 144 63.9
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 4.4e-48 196.4 217 52.1
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 2.6e-45 187.2 293 37.5
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.3e-44 184.9 99 82.8
AL117U10020 Arabidopsis lyrata HOM05D064442 ORTHO05D011622 1.8e-41 174.5 95 85.3
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 9.8e-40 168.7 115 70.4
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 2.8e-39 167.2 101 74.3
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 1.0e-36 158.7 87 80.5
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 1.1e-35 155.2 102 67.6
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 7.2e-35 152.5 89 71.9
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 5.4e-30 136.3 137 51.1
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 2.3e-28 131.0 80 67.5
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 5.4e-22 109.8 148 43.9
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 7.3e-19 99.4 205 35.6
CSS0013325 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 4.4e-08 63.5 70 45.7
HanXRQChr00c0537g0575611 Helianthus annuus HOM05D002999 ORTHO05D003137 1.7e-07 61.6 238 25.2
HanXRQChr09g0256871 Helianthus annuus HOM05D002999 ORTHO05D003137 2.2e-07 61.2 238 25.2
HanXRQChr15g0466521 Helianthus annuus HOM05D002999 ORTHO05D003137 3.7e-07 60.5 238 24.8
HPP92_013924 Vanilla planifolia HOM05D003825 ORTHO05D004491 3.7e-07 60.5 208 25.0
BolC1t00419H Brassica oleracea HOM05D003825 ORTHO05D004491 4.9e-07 60.1 205 25.9
BraA03t15368Z Brassica rapa HOM05D003825 ORTHO05D004491 4.9e-07 60.1 206 27.7
Migut.M00121 Erythranthe guttata HOM05D001610 ORTHO05D001585 4.9e-07 60.1 239 24.3
Sc18g0004560 Simmondsia chinensis HOM05D003825 ORTHO05D004491 4.9e-07 60.1 207 26.6
HPP92_014010 Vanilla planifolia HOM05D003825 ORTHO05D004491 4.9e-07 60.1 208 24.5
PSO675G6008 Papaver somniferum HOM05D003825 ORTHO05D004491 6.4e-07 59.7 216 25.5
AagrBONN_evm.TU.Sc2ySwM_228.3731 Anthoceros agrestis HOM05D002999 ORTHO05D003137 8.3e-07 59.3 235 23.0
A03p62930 Brassica napus HOM05D003825 ORTHO05D004491 8.3e-07 59.3 206 27.2
C01p04290 Brassica napus HOM05D003825 ORTHO05D004491 8.3e-07 59.3 205 25.9
C03p85750 Brassica napus HOM05D003825 ORTHO05D004491 8.3e-07 59.3 206 25.2
BolC3t20866H Brassica oleracea HOM05D003825 ORTHO05D004491 8.3e-07 59.3 206 25.2
AUR62043984 Chenopodium quinoa HOM05D002999 ORTHO05D003137 8.3e-07 59.3 219 26.9
Zm00001eb052290 Zea mays HOM05D003825 ORTHO05D004491 8.3e-07 59.3 205 22.9
CARHR242280 Cardamine hirsuta HOM05D003825 ORTHO05D004491 1.1e-06 58.9 205 26.3
Hma1.2p1_1375F.1_g279040 Hydrangea macrophylla HOM05D003825 ORTHO05D004491 1.1e-06 58.9 207 26.1
Nitab4.5_0004238g0040 Nicotiana tabacum HOM05D002999 ORTHO05D003137 1.1e-06 58.9 208 24.5
A01p03980 Brassica napus HOM05D003825 ORTHO05D004491 1.4e-06 58.5 205 25.9
A08p16790 Brassica napus HOM05D003825 ORTHO05D004491 1.4e-06 58.5 206 25.2
C07p60600 Brassica napus HOM05D003825 ORTHO05D004491 1.4e-06 58.5 206 27.2
BolC7t46489H Brassica oleracea HOM05D003825 ORTHO05D004491 1.4e-06 58.5 206 27.2
BraA01t00386Z Brassica rapa HOM05D003825 ORTHO05D004491 1.4e-06 58.5 205 25.9
BraA08t33644Z Brassica rapa HOM05D003825 ORTHO05D004491 1.4e-06 58.5 244 22.5
ECA236G2533 Erigeron canadensis HOM05D003825 ORTHO05D004491 1.4e-06 58.5 209 25.4
Potri.009G115300 Populus trichocarpa HOM05D003825 ORTHO05D004491 1.4e-06 58.5 207 25.6
Potri.014G136000 Populus trichocarpa HOM05D002999 ORTHO05D003137 1.4e-06 58.5 238 24.4
Pp3c2_19830 Physcomitrium patens HOM05D002999 ORTHO05D003137 1.9e-06 58.2 252 23.8
Glyma.11G118500 Glycine max HOM05D003825 ORTHO05D004491 2.4e-06 57.8 206 24.8
Psat5g006200 Pisum sativum HOM05D003825 ORTHO05D004491 2.4e-06 57.8 207 24.6
Sp7g32260 Schrenkiella parvula HOM05D003825 ORTHO05D004491 2.4e-06 57.8 205 26.3
Hund06228 Selenicereus undatus HOM05D003825 ORTHO05D004491 2.4e-06 57.8 207 24.6
EL10Ac9g21730 Beta vulgaris HOM05D003825 ORTHO05D004491 3.2e-06 57.4 176 25.0
Glyma.12G043900 Glycine max HOM05D003825 ORTHO05D004491 3.2e-06 57.4 206 24.3
Phvul.011G045900 Phaseolus vulgaris HOM05D003825 ORTHO05D004491 3.2e-06 57.4 206 24.8
Aqoxy6G01089 Aquilegia oxysepala HOM05D003825 ORTHO05D004491 4.1e-06 57.0 176 24.4
TPR.G38203 Trifolium pratense HOM05D003825 ORTHO05D004491 4.1e-06 57.0 207 24.2
TWI75G0614 Tripterygium wilfordii HOM05D003825 ORTHO05D004491 4.1e-06 57.0 214 24.3
VMungo1127G1308 Vigna mungo HOM05D003825 ORTHO05D004491 4.1e-06 57.0 206 24.8
Thhalv10025475m.g Eutrema salsugineum HOM05D003825 ORTHO05D004491 5.4e-06 56.6 205 25.9
Lalb_Chr08g0246621 Lupinus albus HOM05D003825 ORTHO05D004491 5.4e-06 56.6 207 24.2
Os03g0669200 Oryza sativa ssp. japonica HOM05D003825 ORTHO05D004491 5.4e-06 56.6 209 23.0
GSVIVG01031958001 Vitis vinifera HOM05D003825 ORTHO05D004491 5.4e-06 56.6 207 24.6
Aqoxy2G03169 Aquilegia oxysepala HOM05D002999 ORTHO05D003137 7.1e-06 56.2 249 25.3
MD10G1077300 Malus domestica HOM05D003825 ORTHO05D004491 7.1e-06 56.2 207 25.1
Nitab4.5_0000557g0030 Nicotiana tabacum HOM05D003825 ORTHO05D004491 7.1e-06 56.2 176 25.6
Cpa.g.sc62.142 Carica papaya HOM05D003825 ORTHO05D004491 9.2e-06 55.8 207 24.6
Cc02_g17630 Coffea canephora HOM05D003825 ORTHO05D004491 9.2e-06 55.8 207 24.2
Nitab4.5_0000215g0100 Nicotiana tabacum HOM05D003825 ORTHO05D004491 9.2e-06 55.8 182 25.3
SGA_v2.0_scaffold58G20541 Striga asiatica HOM05D003825 ORTHO05D004491 9.2e-06 55.8 209 24.4


User provided reference genes

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