Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10024706m.g Eutrema salsugineum HOM05D006572 ORTHO05D008181 1.0e-212 743.8 607 100.0
Sp7g21790 Schrenkiella parvula HOM05D006572 ORTHO05D008181 1.7e-175 620.2 608 88.8
A03p54790 Brassica napus HOM05D006572 ORTHO05D008181 1.6e-168 597.0 599 73.6
BraA03t14546Z Brassica rapa HOM05D006572 ORTHO05D008181 1.6e-168 597.0 599 73.6
BcaNung04237 Brassica carinata HOM05D006572 ORTHO05D008181 1.7e-167 593.6 600 74.0
C07p53150 Brassica napus HOM05D006572 ORTHO05D008181 1.7e-167 593.6 600 74.0
BolC7t45811H Brassica oleracea HOM05D006572 ORTHO05D008181 1.7e-167 593.6 600 74.3
CARHR231220 Cardamine hirsuta HOM05D006572 ORTHO05D008181 4.7e-157 558.9 603 74.5
AL7G29520 Arabidopsis lyrata HOM05D006572 ORTHO05D008181 7.1e-153 545.0 600 79.8
AT4G23840 Arabidopsis thaliana HOM05D006572 ORTHO05D008181 1.1e-145 521.2 600 78.3
Carub.0007s1729 Capsella rubella HOM05D006572 ORTHO05D008181 4.6e-144 515.8 600 78.3
BcaNung04088 Brassica carinata HOM05D006572 ORTHO05D008181 8.7e-143 511.5 548 79.9
Aa31LG6G7050 Aethionema arabicum HOM05D006572 ORTHO05D008181 3.0e-127 459.9 609 77.3
THA.LOC104815028 Tarenaya hassleriana HOM05D006572 ORTHO05D008181 2.0e-110 404.1 602 65.6
Gohir.D03G082800 Gossypium hirsutum HOM05D006572 ORTHO05D008181 3.5e-83 313.5 584 52.4
Gorai.003G080600 Gossypium raimondii HOM05D006572 ORTHO05D008181 4.5e-83 313.2 584 58.2
Gohir.A02G101400 Gossypium hirsutum HOM05D006572 ORTHO05D008181 5.9e-83 312.8 584 58.6
Thecc.03G297200 Theobroma cacao HOM05D006572 ORTHO05D008181 1.1e-81 308.5 597 47.1
Manes.02G010400 Manihot esculenta HOM05D006572 ORTHO05D008181 8.0e-80 302.4 571 51.5
Duzib205G1524 Durio zibethinus HOM05D006572 ORTHO05D008181 1.0e-79 302.0 578 50.5
Rhsim02G0242800 Rhododendron simsii HOM05D006572 ORTHO05D008181 3.0e-79 300.4 589 52.3
COL.COLO4_10694 Corchorus olitorius HOM05D006572 ORTHO05D008181 6.3e-77 292.7 610 38.0
Prupe.5G118200 Prunus persica HOM05D006572 ORTHO05D008181 3.1e-76 290.4 592 50.7
GSVIVG01019526001 Vitis vinifera HOM05D006572 ORTHO05D008181 5.0e-74 283.1 580 53.4
FAN18G4203 Fragaria x ananassa HOM05D006572 ORTHO05D008181 8.6e-74 282.3 613 40.5
MD14G1128100 Malus domestica HOM05D006572 ORTHO05D008181 1.5e-73 281.6 595 54.8
Duzib068G0791 Durio zibethinus HOM05D006572 ORTHO05D008181 9.5e-73 278.9 582 51.5
FAN18G3438 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.2e-72 278.5 598 37.3
Ciclev10019283m.g Citrus clementina HOM05D006572 ORTHO05D008181 1.4e-71 275.0 622 46.3
CiPaw.12G083500 Carya illinoinensis HOM05D006572 ORTHO05D008181 1.8e-71 274.6 575 53.9
Potri.001G092000 Populus trichocarpa HOM05D006572 ORTHO05D008181 8.9e-71 272.3 573 51.1
Glyma.05G216500 Glycine max HOM05D006572 ORTHO05D008181 4.4e-70 270.0 582 49.1
TWI60G0540 Tripterygium wilfordii HOM05D006572 ORTHO05D008181 4.4e-70 270.0 578 51.2
Eucgr.E00859 Eucalyptus grandis HOM05D006572 ORTHO05D008181 5.7e-70 269.6 582 45.9
Phvul.002G297700 Phaseolus vulgaris HOM05D006572 ORTHO05D008181 2.2e-69 267.7 583 48.7
Lalb_Chr05g0224161 Lupinus albus HOM05D006572 ORTHO05D008181 2.9e-69 267.3 581 46.0
FAN04G0113 Fragaria x ananassa HOM05D006572 ORTHO05D008181 3.7e-69 266.9 604 32.3
Nn3g19021 Nelumbo nucifera HOM05D006572 ORTHO05D008181 3.7e-69 266.9 601 56.1
CSS0002826 Camellia sinensis var. sinensis HOM05D006572 ORTHO05D008181 4.9e-69 266.5 589 48.9
RcHm_v2.0_Chr7g0194941 Rosa chinensis HOM05D006572 ORTHO05D008181 4.9e-69 266.5 594 52.4
Migut.A00646 Erythranthe guttata HOM05D006572 ORTHO05D008181 1.1e-68 265.4 578 47.6
Actinidia04204 Actinidia chinensis HOM05D006572 ORTHO05D008181 2.4e-68 264.2 587 54.3
FvH4_5g04510 Fragaria vesca HOM05D006572 ORTHO05D008181 7.0e-68 262.7 603 38.8
MSTRG.25670 Avicennia marina HOM05D006572 ORTHO05D008181 7.8e-67 259.2 580 46.9
EL10Ac5g12911 Beta vulgaris HOM05D006572 ORTHO05D008181 1.0e-66 258.8 602 45.5
Medtr8g099415 Medicago truncatula HOM05D006572 ORTHO05D008181 2.3e-66 257.7 580 38.8
Psat7g026640 Pisum sativum HOM05D006572 ORTHO05D008181 2.9e-66 257.3 581 48.7
PGR042G1206 Punica granatum HOM05D006572 ORTHO05D008181 2.9e-66 257.3 595 53.3
Sabra01G0068400 Salix brachista HOM05D006572 ORTHO05D008181 2.9e-66 257.3 578 50.7
CANSAT21G1897 Cannabis sativa HOM05D006572 ORTHO05D008181 1.1e-65 255.4 571 57.6
FAN08G2039 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.9e-65 254.6 609 41.5
Lj8C208G13 Lonicera japonica HOM05D006572 ORTHO05D008181 1.9e-65 254.6 576 49.1
PGSC0003DMG400012287 Solanum tuberosum HOM05D006572 ORTHO05D008181 2.5e-65 254.2 579 52.7
Sopen08g030540 Solanum pennellii HOM05D006572 ORTHO05D008181 5.6e-65 253.1 579 53.2
Nitab4.5_0005537g0050 Nicotiana tabacum HOM05D006572 ORTHO05D008181 7.3e-65 252.7 587 42.4
VMungo0251G1431 Vigna mungo HOM05D006572 ORTHO05D008181 1.6e-64 251.5 602 39.7
Solyc08g082270.3 Solanum lycopersicum HOM05D006572 ORTHO05D008181 1.4e-63 248.4 579 52.3
Lsat_1_v5_gn_6_12380 Lactuca sativa HOM05D006572 ORTHO05D008181 1.8e-63 248.1 595 52.4
ECA233G0093 Erigeron canadensis HOM05D006572 ORTHO05D008181 2.3e-63 247.7 587 45.3
SHI08936 Sapria himalayana HOM05D006572 ORTHO05D008181 3.1e-63 247.3 609 43.3
arahy.Tifrunner.gnm1.ann1.GR96MW Arachis hypogaea HOM05D006572 ORTHO05D008181 1.2e-62 245.4 577 54.2
Hund11391 Selenicereus undatus HOM05D006572 ORTHO05D008181 1.2e-62 245.4 585 52.5
SalBow1G0494 Salvia bowleyana HOM05D006572 ORTHO05D008181 2.0e-62 244.6 554 45.3
HanXRQChr02g0047891 Helianthus annuus HOM05D006572 ORTHO05D008181 4.4e-62 243.4 575 51.3
AUR62019834 Chenopodium quinoa HOM05D006572 ORTHO05D008181 7.5e-62 242.7 550 49.5
Lj4g0027687 Lotus japonicus HOM05D006572 ORTHO05D008181 7.5e-62 242.7 589 36.8
PSO384G1203 Papaver somniferum HOM05D006572 ORTHO05D008181 3.7e-61 240.4 598 52.5
Atru.BG.201.p Acer truncatum HOM05D006572 ORTHO05D008181 1.2e-59 235.3 322 67.7
SGA_v2.0_scaffold96G28963 Striga asiatica HOM05D006572 ORTHO05D008181 2.7e-59 234.2 600 46.0
arahy.Tifrunner.gnm1.ann1.Z469MH Arachis hypogaea HOM05D006572 ORTHO05D008181 1.7e-58 231.5 577 53.4
Peaxi162Scf00074g00932 Petunia axillaris HOM05D006572 ORTHO05D008181 1.7e-58 231.5 578 43.3
TAR636G1103 Trochodendron aralioides HOM05D006572 ORTHO05D008181 2.3e-58 231.1 527 57.7
TAR629G2735 Trochodendron aralioides HOM05D006572 ORTHO05D008181 3.0e-58 230.7 324 55.9
AUR62010836 Chenopodium quinoa HOM05D006572 ORTHO05D008181 3.9e-58 230.3 579 54.7
MELO3C016288.2 Cucumis melo HOM05D006572 ORTHO05D008181 5.0e-58 229.9 615 44.2
ClCG07G015010 Citrullus lanatus HOM05D006572 ORTHO05D008181 6.6e-58 229.6 580 52.6
ATR0188G004 Amborella trichopoda HOM05D006572 ORTHO05D008181 1.9e-57 228.0 581 48.4
Ah.12g052520 Amaranthus hybridus HOM05D006572 ORTHO05D008181 4.3e-57 226.9 594 49.0
DCAR_029886 Daucus carota HOM05D006572 ORTHO05D008181 9.5e-57 225.7 596 43.1
Nitab4.5_0001231g0070 Nicotiana tabacum HOM05D006572 ORTHO05D008181 1.6e-56 224.9 632 43.0
Sed0014568 Sechium edule HOM05D006572 ORTHO05D008181 6.2e-56 223.0 545 48.3
Dinv37535 Davidia involucrata HOM05D006572 ORTHO05D008181 2.3e-55 221.1 326 51.2
Os05g0212200 Oryza sativa ssp. japonica HOM05D006572 ORTHO05D008181 5.8e-54 216.5 577 49.9
Aqoxy5G04214 Aquilegia oxysepala HOM05D006572 ORTHO05D008181 3.7e-53 213.8 601 44.9
Oeu031670.2 Olea europaea HOM05D006572 ORTHO05D008181 1.4e-52 211.8 607 45.6
Cc08_g16020 Coffea canephora HOM05D006572 ORTHO05D008181 1.0e-50 205.7 595 46.6
vmacro11428 Vaccinium macrocarpon HOM05D006572 ORTHO05D008181 6.6e-50 203.0 588 46.3
TPR.G3379 Trifolium pratense HOM05D006572 ORTHO05D008181 1.1e-49 202.2 578 48.1
HPP92_024023 Vanilla planifolia HOM05D006572 ORTHO05D008181 4.0e-47 193.7 593 52.1
Haze_08618 Corylus avellana HOM05D006572 ORTHO05D008181 1.2e-46 192.2 519 46.2
Zm00001eb350650 Zea mays HOM05D006572 ORTHO05D008181 7.8e-43 179.5 576 46.4
MBI06_g08449_MAGBIO Magnolia biondii HOM05D006572 ORTHO05D008181 3.3e-41 174.1 526 39.0
SEGI_00989 Sequoiadendron giganteum HOM05D006572 ORTHO05D008181 4.7e-40 170.2 604 48.2
CAN.G532.118 Capsicum annuum HOM05D006572 ORTHO05D008181 1.9e-36 158.3 503 43.7
Cfa021209 Carpinus fangiana HOM05D006572 ORTHO05D008181 4.2e-36 157.1 497 46.7
Ca_17483_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 3.5e-35 154.1 585 33.7
Ca_17508_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 3.5e-35 154.1 585 33.7
CsaV3_4G006550 Cucumis sativus L. HOM05D006572 ORTHO05D008181 1.0e-34 152.5 512 46.1
CDE03G0094 Ceratophyllum demersum HOM05D006572 ORTHO05D008181 7.3e-33 146.4 544 47.2
Dinv38835 Davidia involucrata HOM05D006572 ORTHO05D008181 1.6e-32 145.2 362 39.8
BcaNung04238 Brassica carinata HOM05D006572 ORTHO05D008181 2.0e-30 138.3 87 79.3
SMO232G0056 Selaginella moellendorffii HOM05D006572 ORTHO05D008181 9.9e-30 136.0 325 43.7
Sc22g0005020 Simmondsia chinensis HOM05D006572 ORTHO05D008181 4.9e-29 133.7 508 46.7
unitig_748.g8129 Utricularia gibba HOM05D006572 ORTHO05D008181 9.9e-22 109.4 152 41.4
Pp3c22_12260 Physcomitrium patens HOM05D006572 ORTHO05D008181 2.2e-21 108.2 611 21.4
FAN13G1782 Fragaria x ananassa HOM05D006572 ORTHO05D008181 3.3e-17 94.4 309 37.5
Dinv37534 Davidia involucrata HOM05D006572 ORTHO05D008181 6.7e-10 70.1 216 37.5
TAR376G0673 Trochodendron aralioides HOM05D006572 ORTHO05D008181 7.4e-09 66.6 109 43.1
TAR629G3536 Trochodendron aralioides HOM05D006572 ORTHO05D008181 2.8e-08 64.7 110 40.0
QL12p023582 Quercus lobata HOM05D006572 ORTHO05D008181 3.7e-08 64.3 54 57.4
unitig_748.g8130 Utricularia gibba HOM05D006572 ORTHO05D008181 8.2e-08 63.2 106 38.7
QL93p2003_0058 Quercus lobata HOM05D006572 ORTHO05D008181 1.1e-07 62.8 54 55.6
CBR_g39933 Chara braunii HOM05D006572 ORTHO05D008181 1.5e-06 58.9 90 34.4


User provided reference genes

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