Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10024149m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 5.4e-94 347.8 196 100.0
Thhalv10024128m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 1.2e-74 283.5 136 99.3
Thhalv10024006m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 3.1e-73 278.9 175 77.7
Thhalv10024148m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 1.3e-68 263.5 141 89.4
Thhalv10023876m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 7.8e-53 211.1 151 73.5
BcaB04g20260 Brassica carinata HOM05D007901 ORTHO05D016734 2.0e-40 169.9 145 62.8
BraA09t38123Z Brassica rapa HOM05D007901 ORTHO05D016734 1.2e-37 160.6 210 46.7
A09p25480 Brassica napus HOM05D007901 ORTHO05D016734 6.7e-36 154.8 153 54.9
CARHR052690 Cardamine hirsuta HOM05D007901 ORTHO05D016734 3.4e-32 142.5 143 56.6
Carub.0002s0498 Capsella rubella HOM05D007901 ORTHO05D010902 5.8e-32 141.7 146 55.5
Carub.0170s0002 Capsella rubella HOM05D007901 ORTHO05D010902 6.4e-31 138.3 147 53.7
Carub.0002s0497 Capsella rubella HOM05D007901 ORTHO05D010902 3.2e-30 136.0 147 53.7
BcaB01g01779 Brassica carinata HOM05D007901 ORTHO05D016734 7.1e-30 134.8 125 59.2
Sp2g04430 Schrenkiella parvula HOM05D007901 ORTHO05D010902 7.1e-30 134.8 146 54.1
AL2G16330 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 1.6e-29 133.7 143 55.9
AL2G16550 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 1.6e-29 133.7 143 53.8
AT1G60280 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 2.1e-29 133.3 146 55.5
A01p29180 Brassica napus HOM05D007901 ORTHO05D010902 3.5e-29 132.5 147 54.4
AL2G16360 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 7.9e-29 131.3 147 51.7
C01p36710 Brassica napus HOM05D007901 ORTHO05D010902 1.3e-28 130.6 145 53.8
C04p26040 Brassica napus HOM05D007901 ORTHO05D016734 1.3e-28 130.6 111 61.3
BolC1t03631H Brassica oleracea HOM05D007901 ORTHO05D010902 1.3e-28 130.6 145 53.8
BolC4t24201H Brassica oleracea HOM05D007901 ORTHO05D016734 1.3e-28 130.6 111 61.3
BraA01t03004Z Brassica rapa HOM05D007901 ORTHO05D010902 1.3e-28 130.6 147 53.7
Carub.0002s0495 Capsella rubella HOM05D007901 ORTHO05D010902 3.9e-28 129.0 147 53.1
AT1G60300 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 5.1e-28 128.6 143 53.8
AT1G60340 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 6.7e-28 128.3 143 54.5
BraA01t02977Z Brassica rapa HOM05D007901 ORTHO05D010902 6.7e-28 128.3 146 53.4
BcaC09g49444 Brassica carinata HOM05D007901 ORTHO05D010902 8.7e-28 127.9 145 53.1
BolC1t03653H Brassica oleracea HOM05D007901 ORTHO05D010902 8.7e-28 127.9 145 53.1
BcaC09g49416 Brassica carinata HOM05D007901 ORTHO05D010902 1.5e-27 127.1 138 55.1
Carub.0170s0003 Capsella rubella HOM05D007901 ORTHO05D010902 4.3e-27 125.6 146 51.4
BcaB04g20243 Brassica carinata HOM05D007901 ORTHO05D010902 5.6e-27 125.2 147 52.4
AT1G60380 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 1.3e-26 124.0 143 54.5
C01p36960 Brassica napus HOM05D007901 ORTHO05D010902 1.3e-26 124.0 119 59.7
AT1G60350 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 3.7e-26 122.5 143 51.7
CARHR052680 Cardamine hirsuta HOM05D007901 ORTHO05D010902 3.7e-26 122.5 100 66.0
BcaC04g20178 Brassica carinata HOM05D007901 ORTHO05D010902 8.2e-26 121.3 145 51.0
BolC9t57543H Brassica oleracea HOM05D007901 ORTHO05D010902 1.8e-25 120.2 145 50.3
BraA10t43416Z Brassica rapa HOM05D007901 ORTHO05D010902 2.4e-25 119.8 143 52.4
AL2G16320 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 4.0e-25 119.0 143 51.7
A10p13190 Brassica napus HOM05D007901 ORTHO05D010902 5.3e-25 118.6 143 51.7
C09p46950 Brassica napus HOM05D007901 ORTHO05D010902 9.0e-25 117.9 148 50.7
BolC9t57581H Brassica oleracea HOM05D007901 ORTHO05D010902 9.0e-25 117.9 144 51.4
C09p47250 Brassica napus HOM05D007901 ORTHO05D010902 1.2e-24 117.5 142 50.7
Thhalv10023723m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 1.2e-24 117.5 159 44.0
BcaC04g20143 Brassica carinata HOM05D007901 ORTHO05D010902 1.5e-24 117.1 144 51.4
BcaB04g20274 Brassica carinata HOM05D007901 ORTHO05D012782 2.0e-24 116.7 167 42.5
A10p13320 Brassica napus HOM05D007901 ORTHO05D010902 2.0e-24 116.7 145 49.7
BraA10t43433Z Brassica rapa HOM05D007901 ORTHO05D010902 3.4e-24 115.9 145 49.7
BcaB04g20261 Brassica carinata HOM05D007901 ORTHO05D010902 4.5e-24 115.5 132 52.3
A10p13180 Brassica napus HOM05D007901 ORTHO05D010902 1.7e-23 113.6 148 48.6
BraA10t43415Z Brassica rapa HOM05D007901 ORTHO05D010902 1.7e-23 113.6 148 48.6
Carub.0002s0501 Capsella rubella HOM05D007901 ORTHO05D012782 1.7e-23 113.6 158 43.7
BcaB08g35962 Brassica carinata HOM05D007901 ORTHO05D010902 2.9e-23 112.8 143 49.0
BolC1t03680H Brassica oleracea HOM05D007901 ORTHO05D012782 3.8e-23 112.5 164 42.1
BraA01t03070Z Brassica rapa HOM05D007901 ORTHO05D012782 3.8e-23 112.5 166 41.6
AL2G16340 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 4.9e-23 112.1 123 52.8
BcaC09g49391 Brassica carinata HOM05D007901 ORTHO05D012782 1.4e-22 110.5 164 40.9
C01p37150 Brassica napus HOM05D007901 ORTHO05D012782 1.4e-22 110.5 164 40.9
AL2G16410 Arabidopsis lyrata HOM05D007901 ORTHO05D012782 3.5e-21 105.9 157 43.3
CARHR052710 Cardamine hirsuta HOM05D007901 ORTHO05D012782 6.0e-21 105.1 127 48.0
BcaC06g31809 Brassica carinata HOM05D007901 ORTHO05D016734 1.5e-19 100.5 83 62.7
AT1G60240 Arabidopsis thaliana HOM05D007901 ORTHO05D012782 1.9e-19 100.1 158 41.8
BcaC02g10635 Brassica carinata HOM05D007901 ORTHO05D016734 5.7e-19 98.6 85 62.4
CARHR052720 Cardamine hirsuta HOM05D007901 ORTHO05D012782 8.2e-18 94.7 153 39.2
BcaC04g20179 Brassica carinata HOM05D007901 ORTHO05D012782 1.3e-15 87.4 84 58.3
Thhalv10023895m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 2.9e-15 86.3 117 44.4
BcaB05g23805 Brassica carinata HOM05D007901 ORTHO05D016734 6.5e-15 85.1 140 37.1
A01p28980 Brassica napus HOM05D007901 ORTHO05D010902 5.1e-12 75.5 69 56.5
Gohir.A05G177600 Gossypium hirsutum HOM05D000010 ORTHO05D000302 5.5e-06 55.5 71 39.4
Gohir.D05G181000 Gossypium hirsutum HOM05D000010 ORTHO05D000302 5.5e-06 55.5 71 39.4
Gorai.009G186000 Gossypium raimondii HOM05D000010 ORTHO05D000302 5.5e-06 55.5 71 39.4
Gohir.D10G080600 Gossypium hirsutum HOM05D000010 ORTHO05D001550 7.2e-06 55.1 93 24.7
Gorai.011G087700 Gossypium raimondii HOM05D000010 ORTHO05D001550 7.2e-06 55.1 93 24.7
Glyma.04G014900 Glycine max HOM05D000010 ORTHO05D000302 9.4e-06 54.7 71 38.0
Glyma.06G014900 Glycine max HOM05D000010 ORTHO05D000302 9.4e-06 54.7 71 38.0
Gohir.D01G087300 Gossypium hirsutum HOM05D000010 ORTHO05D000302 9.4e-06 54.7 71 38.0
Gorai.002G113300 Gossypium raimondii HOM05D000010 ORTHO05D000302 9.4e-06 54.7 71 38.0


User provided reference genes

Program Settings