Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 4.8e-106 387.9 202 100.0
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 1.2e-51 207.2 250 53.6
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 2.1e-48 196.4 242 53.3
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 3.9e-47 192.2 246 51.6
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 8.9e-44 181.0 245 49.4
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 5.4e-41 171.8 243 50.6
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 2.1e-40 169.9 239 48.5
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 8.7e-39 164.5 238 47.1
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 6.9e-36 154.8 237 47.7
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 6.9e-36 154.8 237 47.7
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 2.2e-34 149.8 237 46.8
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 4.9e-34 148.7 237 46.4
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 7.1e-33 144.8 232 45.3
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 4.9e-26 122.1 264 40.9
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 1.2e-24 117.5 235 38.7
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 1.6e-24 117.1 262 37.0
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 1.1e-17 94.4 249 33.7
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 1.1e-17 94.4 254 33.9
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 2.7e-16 89.7 146 50.0
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 4.6e-16 89.0 261 31.8
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 4.6e-16 89.0 262 30.9
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 3.0e-15 86.3 266 30.8
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.5e-14 83.2 244 31.6
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 1.6e-13 80.5 153 44.4
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 1.6e-13 80.5 269 31.2
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 2.1e-13 80.1 290 27.9
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 4.1e-12 75.9 49 67.3
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 5.3e-12 75.5 269 30.9
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 6.9e-12 75.1 103 49.5
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 9.0e-12 74.7 262 29.0
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 1.2e-11 74.3 49 65.3
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 1.5e-11 73.9 45 68.9
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 2.6e-11 73.2 259 26.6
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 3.4e-11 72.8 82 43.9
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 3.4e-11 72.8 82 43.9
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 5.8e-11 72.0 71 47.9
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 5.8e-11 72.0 246 31.7
AL6G53120 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 7.6e-11 71.6 48 81.2
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 7.6e-11 71.6 116 36.2
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 7.6e-11 71.6 291 28.2
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 1.0e-10 71.2 241 30.7
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.3e-10 70.9 49 59.2
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 1.3e-10 70.9 250 29.2
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 1.3e-10 70.9 45 62.2
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 1.3e-10 70.9 45 64.4
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.7e-10 70.5 45 62.2
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.7e-10 70.5 45 62.2
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 1.7e-10 70.5 45 66.7
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 2.2e-10 70.1 45 64.4
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 3.8e-10 69.3 210 31.0
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 5.0e-10 68.9 258 26.0
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 6.5e-10 68.6 58 58.6
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 6.5e-10 68.6 251 27.1
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 8.4e-10 68.2 49 57.1
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 8.4e-10 68.2 244 27.9
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 1.1e-09 67.8 49 55.1
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 1.1e-09 67.8 263 28.1
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 1.1e-09 67.8 45 60.0
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 1.9e-09 67.0 45 60.0
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 1.9e-09 67.0 45 57.8
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 1.9e-09 67.0 42 59.5
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 2.5e-09 66.6 260 27.3
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 2.5e-09 66.6 45 62.2
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 2.5e-09 66.6 235 27.7
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.5e-09 66.6 45 57.8
BcaC03g16136 Brassica carinata HOM05D015278 ORTHO05D032781 3.2e-09 66.2 214 34.6
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 3.2e-09 66.2 42 59.5
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 3.2e-09 66.2 45 60.0
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 3.2e-09 66.2 223 30.5
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 3.2e-09 66.2 251 27.1
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 3.2e-09 66.2 245 28.2
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 4.2e-09 65.9 270 28.5
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 5.5e-09 65.5 58 51.7
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 7.1e-09 65.1 45 60.0
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 7.1e-09 65.1 42 59.5
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 7.1e-09 65.1 44 59.1
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 9.3e-09 64.7 60 48.3
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 9.3e-09 64.7 42 64.3
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 9.3e-09 64.7 46 60.9
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 1.2e-08 64.3 251 29.9
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 1.2e-08 64.3 251 28.7
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 1.6e-08 63.9 190 32.6
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 1.6e-08 63.9 117 44.4
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 1.6e-08 63.9 43 60.5
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 1.6e-08 63.9 258 27.1
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 2.1e-08 63.5 264 29.2
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 2.1e-08 63.5 258 27.1
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 3.5e-08 62.8 43 58.1
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 3.5e-08 62.8 45 60.0
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 3.5e-08 62.8 49 55.1
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 4.6e-08 62.4 45 60.0
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 6.1e-08 62.0 45 60.0
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 6.1e-08 62.0 257 25.3
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 6.1e-08 62.0 42 54.8
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 1.8e-07 60.5 260 25.8
AL1G58150 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 1.8e-07 60.5 89 43.8
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 1.8e-07 60.5 45 55.6
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 2.3e-07 60.1 263 26.6
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 2.3e-07 60.1 256 28.1
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 3.9e-07 59.3 42 54.8
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 3.9e-07 59.3 42 54.8
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 3.9e-07 59.3 247 26.3
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 5.1e-07 58.9 42 52.4
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 5.1e-07 58.9 42 54.8
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 5.1e-07 58.9 42 54.8
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 5.1e-07 58.9 259 27.0
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 1.5e-06 57.4 249 26.9
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.9e-06 57.0 40 55.0
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 1.9e-06 57.0 252 26.2
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 2.5e-06 56.6 47 46.8
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 2.5e-06 56.6 67 46.3
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 2.5e-06 56.6 261 27.2
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 3.3e-06 56.2 117 31.6
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 3.3e-06 56.2 248 26.2
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 3.3e-06 56.2 55 47.3
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 5.7e-06 55.5 40 50.0


User provided reference genes

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