Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 1.4e-92 342.8 164 100.0
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 5.7e-81 304.3 165 87.9
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 3.7e-80 301.6 164 88.4
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 3.4e-78 295.0 164 85.4
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 1.0e-77 293.5 164 83.5
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 2.2e-77 292.4 158 88.0
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 2.2e-77 292.4 158 88.0
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 2.2e-77 292.4 158 88.0
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 5.5e-76 287.7 164 81.1
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 1.4e-74 283.1 164 82.9
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 7.7e-70 267.3 138 91.3
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 3.3e-65 251.9 167 72.5
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 8.0e-59 230.7 121 89.3
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 2.3e-53 212.6 160 63.8
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 1.9e-31 139.8 96 62.5
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 5.4e-31 138.3 96 60.4
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 9.2e-31 137.5 96 59.4
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.7e-30 136.0 96 59.4
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 3.0e-29 132.5 96 59.4
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 3.9e-29 132.1 101 56.4
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 5.6e-28 128.3 95 56.8
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 7.3e-28 127.9 95 56.8
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 7.3e-28 127.9 124 50.0
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 1.6e-27 126.7 121 42.1
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 3.6e-27 125.6 126 45.2
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 4.7e-27 125.2 128 50.8
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 6.2e-27 124.8 146 41.8
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 8.1e-27 124.4 132 40.2
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 1.1e-26 124.0 157 38.9
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 1.1e-26 124.0 98 53.1
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 1.4e-26 123.6 130 43.1
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 1.8e-26 123.2 86 62.8
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 1.8e-26 123.2 95 57.9
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 2.3e-26 122.9 166 37.3
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 3.1e-26 122.5 98 54.1
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 3.1e-26 122.5 130 47.7
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 4.0e-26 122.1 127 48.0
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 4.0e-26 122.1 96 55.2
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 4.0e-26 122.1 130 50.8
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 5.2e-26 121.7 110 51.8
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 5.2e-26 121.7 121 44.6
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 6.8e-26 121.3 99 48.5
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 8.9e-26 120.9 101 51.5
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 8.9e-26 120.9 99 54.5
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 8.9e-26 120.9 110 50.9
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 8.9e-26 120.9 98 52.0
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 8.9e-26 120.9 120 44.2
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 1.2e-25 120.6 94 54.3
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 2.0e-25 119.8 104 47.1
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 2.0e-25 119.8 132 46.2
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 3.4e-25 119.0 128 43.8
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 4.4e-25 118.6 124 46.8
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 4.4e-25 118.6 109 49.5
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 5.8e-25 118.2 143 37.1
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 5.8e-25 118.2 115 49.6
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 7.5e-25 117.9 131 42.7
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 9.9e-25 117.5 121 47.9
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 9.9e-25 117.5 114 46.5
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 9.9e-25 117.5 98 48.0
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 1.3e-24 117.1 98 46.9
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 1.3e-24 117.1 111 45.0
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 1.3e-24 117.1 111 45.0
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 1.3e-24 117.1 117 41.0
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 1.3e-24 117.1 102 52.9
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 1.7e-24 116.7 95 52.6
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 1.7e-24 116.7 110 50.0
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 1.7e-24 116.7 90 58.9
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 2.2e-24 116.3 137 39.4
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 2.9e-24 115.9 125 44.8
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 3.7e-24 115.5 141 39.0
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 4.9e-24 115.2 93 49.5
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 4.9e-24 115.2 96 45.8
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 4.9e-24 115.2 96 45.8
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 4.9e-24 115.2 141 39.7
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 6.4e-24 114.8 120 41.7
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 6.4e-24 114.8 96 45.8
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 6.4e-24 114.8 96 45.8
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 8.3e-24 114.4 99 47.5
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 8.3e-24 114.4 124 47.6
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 1.1e-23 114.0 98 45.9
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 1.1e-23 114.0 103 44.7
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 1.1e-23 114.0 159 34.0
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 1.4e-23 113.6 175 37.1
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.4e-23 113.6 128 41.4
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 1.4e-23 113.6 98 44.9
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 1.9e-23 113.2 129 46.5
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 3.2e-23 112.5 109 43.1
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 3.2e-23 112.5 98 46.9
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 4.1e-23 112.1 131 43.5
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 4.1e-23 112.1 98 46.9
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 5.4e-23 111.7 118 43.2
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 7.1e-23 111.3 104 44.2
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 7.1e-23 111.3 98 48.0
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 9.2e-23 110.9 125 39.2
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 1.2e-22 110.5 98 46.9
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 1.2e-22 110.5 98 46.9
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 1.2e-22 110.5 103 41.7
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 1.2e-22 110.5 96 50.0
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 1.2e-22 110.5 137 35.8
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 1.6e-22 110.2 129 41.9
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 2.7e-22 109.4 124 45.2
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 2.7e-22 109.4 106 42.5
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 3.5e-22 109.0 101 47.5
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 4.6e-22 108.6 136 35.3
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 4.6e-22 108.6 98 46.9
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 4.6e-22 108.6 136 36.0
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 6.0e-22 108.2 99 44.4
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 6.0e-22 108.2 126 46.0
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 7.8e-22 107.8 119 43.7
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 7.8e-22 107.8 96 45.8
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 7.8e-22 107.8 86 48.8
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 1.0e-21 107.5 92 50.0
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 1.0e-21 107.5 139 35.3
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 3.0e-21 105.9 125 40.0
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 3.0e-21 105.9 122 39.3
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 3.0e-21 105.9 111 41.4
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 3.9e-21 105.5 130 36.9
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 5.1e-21 105.1 101 43.6
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 6.6e-21 104.8 114 42.1
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 6.6e-21 104.8 113 40.7
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 8.6e-21 104.4 107 43.0
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 8.6e-21 104.4 109 38.5
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 1.1e-20 104.0 136 36.8
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 2.5e-20 102.8 107 43.9
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 2.5e-20 102.8 98 43.9
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 3.3e-20 102.4 124 37.1
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 3.3e-20 102.4 98 46.9
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 5.6e-20 101.7 97 44.3
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 5.6e-20 101.7 85 48.2
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 5.6e-20 101.7 97 44.3
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 5.6e-20 101.7 138 38.4
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 7.3e-20 101.3 106 43.4
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 9.5e-20 100.9 135 37.0
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 1.2e-19 100.5 106 40.6
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 1.2e-19 100.5 125 36.8
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 1.2e-19 100.5 98 43.9
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 1.6e-19 100.1 113 39.8
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 1.6e-19 100.1 96 42.7
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 2.1e-19 99.8 108 41.7
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 2.8e-19 99.4 125 40.0
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 2.8e-19 99.4 91 45.1
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 2.8e-19 99.4 92 47.8
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 3.6e-19 99.0 127 37.8
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 4.7e-19 98.6 98 41.8
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 6.2e-19 98.2 96 43.8
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 8.1e-19 97.8 98 42.9
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 8.1e-19 97.8 112 37.5
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 8.1e-19 97.8 96 43.8
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 1.4e-18 97.1 105 40.0
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 1.4e-18 97.1 91 44.0
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 3.1e-18 95.9 98 41.8
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 4.0e-18 95.5 70 58.6
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 6.8e-18 94.7 98 40.8
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 8.9e-18 94.4 98 40.8
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 8.9e-18 94.4 98 40.8
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 8.9e-18 94.4 87 46.0
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 1.2e-17 94.0 98 40.8
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 1.2e-17 94.0 98 40.8
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 3.4e-17 92.4 116 40.5
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 3.4e-17 92.4 126 37.3
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 4.4e-17 92.0 107 36.4
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 7.6e-17 91.3 93 44.1
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 2.2e-16 89.7 101 42.6
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 2.2e-16 89.7 68 54.4
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 4.9e-16 88.6 95 41.1
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 8.4e-16 87.8 147 33.3
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 1.4e-15 87.0 97 44.3
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 2.4e-15 86.3 93 45.2
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 3.2e-15 85.9 95 40.0
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 2.7e-14 82.8 94 42.6
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 7.8e-14 81.3 61 55.7
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 1.9e-12 76.6 114 33.3
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 6.9e-10 68.2 57 47.4
Sabra05G0012900 Salix brachista HOM05D002444 ORTHO05D004748 3.4e-09 65.9 110 40.0
Actinidia31640 Actinidia chinensis HOM05D008739 ORTHO05D010871 4.9e-08 62.0 70 35.7
Lsat_1_v5_gn_9_13661 Lactuca sativa HOM05D008739 ORTHO05D010871 8.4e-08 61.2 82 32.9
HPP92_002049 Vanilla planifolia HOM05D040614 ORTHO05D036980 2.4e-07 59.7 83 33.7
Ciclev10003751m.g Citrus clementina HOM05D002444 ORTHO05D004748 7.1e-07 58.2 65 43.1
SMO361G0689 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 2.1e-06 56.6 89 38.2
HanXRQChr08g0230271 Helianthus annuus HOM05D008739 ORTHO05D010871 3.5e-06 55.8 123 30.9
Cpa.g.sc2.284 Carica papaya HOM05D008739 ORTHO05D010871 4.6e-06 55.5 75 40.0
Ciclev10003504m.g Citrus clementina HOM05D008739 ORTHO05D010871 6.0e-06 55.1 115 30.4
SMO361G0424 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 6.0e-06 55.1 89 37.1
Thecc.10G185700 Theobroma cacao HOM05D008739 ORTHO05D010871 7.8e-06 54.7 70 35.7


User provided reference genes

Program Settings