Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10023885m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 7.3e-264 913.3 448 100.0
Thhalv10023845m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 1.7e-236 822.4 448 92.4
Thhalv10024043m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 2.4e-214 748.8 448 83.3
Thhalv10023878m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 5.3e-214 747.7 449 83.3
Thhalv10023947m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 1.1e-198 696.8 425 84.0
Thhalv10024022m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 5.7e-192 674.5 448 75.4
Thhalv10024036m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 9.2e-174 614.0 448 70.8
Thhalv10023802m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 7.8e-165 584.3 421 70.5
BolC1t03792H Brassica oleracea HOM05D007484 ORTHO05D008290 1.3e-140 503.8 444 58.3
C01p38280 Brassica napus HOM05D007484 ORTHO05D008290 4.3e-139 498.8 444 57.9
A01p30140 Brassica napus HOM05D007484 ORTHO05D008290 5.6e-139 498.4 427 58.5
BolC1t03787H Brassica oleracea HOM05D007484 ORTHO05D008290 1.1e-137 494.2 427 58.5
BraA01t03152Z Brassica rapa HOM05D007484 ORTHO05D008290 1.1e-137 494.2 427 58.1
C06p16440 Brassica napus HOM05D007484 ORTHO05D008290 1.7e-135 486.9 444 57.0
BolC6t36847H Brassica oleracea HOM05D007484 ORTHO05D008290 1.7e-135 486.9 444 57.0
Sp2g03170 Schrenkiella parvula HOM05D007484 ORTHO05D008290 8.4e-135 484.6 421 58.9
AL2G15000 Arabidopsis lyrata HOM05D007484 ORTHO05D008290 3.5e-133 479.2 441 56.9
BcaC08g44240 Brassica carinata HOM05D007484 ORTHO05D008290 4.3e-131 472.2 444 55.9
AL2G15010 Arabidopsis lyrata HOM05D007484 ORTHO05D008290 3.4e-128 462.6 440 55.7
AT1G61320 Arabidopsis thaliana HOM05D007484 ORTHO05D008290 5.8e-128 461.8 442 56.3
Sp2g04890 Schrenkiella parvula HOM05D007484 ORTHO05D008290 2.9e-127 459.5 398 59.0
Carub.0002s1064 Capsella rubella HOM05D007484 ORTHO05D008290 1.1e-126 457.6 440 55.7
Thhalv10023839m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 1.1e-126 457.6 295 80.0
Carub.0002s1106 Capsella rubella HOM05D007484 ORTHO05D008290 3.5e-125 452.6 442 54.3
Carub.0005s0816 Capsella rubella HOM05D007484 ORTHO05D008290 6.2e-122 441.8 442 54.3
Carub.0002s1104 Capsella rubella HOM05D007484 ORTHO05D008290 8.1e-122 441.4 442 53.8
AT1G61330 Arabidopsis thaliana HOM05D007484 ORTHO05D008290 1.2e-120 437.6 443 52.8
BcaC08g44241 Brassica carinata HOM05D007484 ORTHO05D008290 1.3e-111 407.5 456 49.3
Thhalv10024091m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 8.2e-98 361.7 297 63.6
CARHR051310 Cardamine hirsuta HOM05D007484 ORTHO05D008290 2.2e-95 353.6 298 59.4
Sp2g04880 Schrenkiella parvula HOM05D007484 ORTHO05D008290 1.9e-94 350.5 448 46.9
C06p16450 Brassica napus HOM05D007484 ORTHO05D008290 3.2e-94 349.7 310 56.5
BolC6t36848H Brassica oleracea HOM05D007484 ORTHO05D008290 3.2e-94 349.7 310 56.5
A01p30150 Brassica napus HOM05D007484 ORTHO05D008290 1.0e-92 344.7 302 57.3
Carub.0002s1107 Capsella rubella HOM05D007484 ORTHO05D008290 3.8e-87 326.2 295 58.3
BcaB04g20332 Brassica carinata HOM05D007484 ORTHO05D008290 3.0e-84 316.6 329 52.0
THA.LOC104809547 Tarenaya hassleriana HOM05D007484 ORTHO05D008290 2.2e-79 300.4 427 37.2
C01p38250 Brassica napus HOM05D007484 ORTHO05D008290 1.6e-77 294.3 427 41.9
Aa31LG2G9340 Aethionema arabicum HOM05D007484 ORTHO05D008290 4.7e-77 292.7 449 38.5
QL04p018320 Quercus lobata HOM05D007484 ORTHO05D008290 6.6e-63 245.7 419 34.6
CARHR053380 Cardamine hirsuta HOM05D007484 ORTHO05D008290 1.2e-61 241.5 207 62.3
BraA01t03151Z Brassica rapa HOM05D007484 ORTHO05D008290 8.0e-61 238.8 209 55.0
Haze_06572 Corylus avellana HOM05D007484 ORTHO05D008290 8.3e-58 228.8 417 33.6
Dinv40482 Davidia involucrata HOM05D007484 ORTHO05D008290 1.1e-57 228.4 409 32.8
Cfa000354 Carpinus fangiana HOM05D007484 ORTHO05D008290 2.4e-57 227.3 417 32.9
Eucgr.D00711 Eucalyptus grandis HOM05D007484 ORTHO05D008290 1.5e-54 218.0 409 32.8
Sabra11G0029500 Salix brachista HOM05D007484 ORTHO05D008290 1.6e-53 214.5 419 32.5
Potri.011G042900 Populus trichocarpa HOM05D007484 ORTHO05D008290 7.5e-51 205.7 429 31.9
Lalb_Chr20g0122271 Lupinus albus HOM05D007484 ORTHO05D008290 6.0e-48 196.1 429 30.5
Thhalv10023890m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 5.0e-47 193.0 142 63.4
TAR626G0438 Trochodendron aralioides HOM05D007484 ORTHO05D008290 6.6e-47 192.6 409 32.3
Potri.004G034500 Populus trichocarpa HOM05D007484 ORTHO05D008290 1.1e-46 191.8 412 29.6
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 1.9e-46 191.0 416 30.0
Medtr7g076760 Medicago truncatula HOM05D007484 ORTHO05D008290 9.5e-46 188.7 432 29.2
Medtr7g076570 Medicago truncatula HOM05D007484 ORTHO05D008290 8.9e-44 182.2 431 27.8
Glyma.13G246100 Glycine max HOM05D007484 ORTHO05D008290 2.6e-43 180.6 427 27.4
Rhsim13G0170100 Rhododendron simsii HOM05D007484 ORTHO05D008290 2.6e-43 180.6 446 28.0
Prupe.4G036700 Prunus persica HOM05D007484 ORTHO05D008290 2.2e-42 177.6 411 29.7
Medtr7g050670 Medicago truncatula HOM05D007484 ORTHO05D008290 3.7e-42 176.8 419 27.2
VMungo0540G2082 Vigna mungo HOM05D007484 ORTHO05D008290 8.3e-42 175.6 421 28.5
TWI63G0466 Tripterygium wilfordii HOM05D007484 ORTHO05D008290 1.9e-41 174.5 406 29.3
PGR004G1436 Punica granatum HOM05D007484 ORTHO05D008290 1.2e-40 171.8 420 26.9
Atru.chr10.2009 Acer truncatum HOM05D007484 ORTHO05D008290 1.6e-40 171.4 404 28.7
Medtr4g088845 Medicago truncatula HOM05D007484 ORTHO05D008290 2.3e-39 167.5 418 27.0
Nn1g06758 Nelumbo nucifera HOM05D007484 ORTHO05D008290 3.9e-39 166.8 425 27.8
Phvul.006G192000 Phaseolus vulgaris HOM05D007484 ORTHO05D008290 2.5e-38 164.1 427 27.6
Duzib192G0019 Durio zibethinus HOM05D007484 ORTHO05D008290 3.3e-38 163.7 338 30.2
Peaxi162Scf00083g00015 Petunia axillaris HOM05D007484 ORTHO05D008290 2.8e-37 160.6 431 25.8
CANSAT56G1153 Cannabis sativa HOM05D007484 ORTHO05D008290 1.8e-36 157.9 418 27.0
MD10G1303300 Malus domestica HOM05D007484 ORTHO05D008290 2.9e-34 150.6 417 28.3
TWI38G1471 Tripterygium wilfordii HOM05D007484 ORTHO05D008290 4.9e-34 149.8 349 29.2
Solyc02g079120.1 Solanum lycopersicum HOM05D007484 ORTHO05D008290 2.4e-33 147.5 434 25.3
Actinidia26998 Actinidia chinensis HOM05D007484 ORTHO05D008290 3.2e-33 147.1 443 27.1
Lj6g0012024 Lotus japonicus HOM05D007484 ORTHO05D008290 7.1e-33 146.0 409 26.2
CARHR053390 Cardamine hirsuta HOM05D007484 ORTHO05D008290 1.6e-32 144.8 143 50.3
Peaxi162Scf00149g00517 Petunia axillaris HOM05D007484 ORTHO05D008290 4.6e-32 143.3 420 23.6
PGSC0003DMG400043893 Solanum tuberosum HOM05D007484 ORTHO05D008290 2.3e-31 141.0 449 24.9
PGSC0003DMG400037537 Solanum tuberosum HOM05D007484 ORTHO05D008290 3.0e-31 140.6 434 25.8
Aqoxy4G00756 Aquilegia oxysepala HOM05D007484 ORTHO05D008290 3.9e-31 140.2 435 27.4
Nitab4.5_0009994g0020 Nicotiana tabacum HOM05D007484 ORTHO05D008290 1.4e-28 131.7 429 24.5
SGA_v2.0_scaffold739G53544 Striga asiatica HOM05D007484 ORTHO05D008290 5.2e-28 129.8 405 24.7
Nitab4.5_0000190g0090 Nicotiana tabacum HOM05D007484 ORTHO05D008290 2.0e-27 127.9 440 23.6
SalBow8G0887 Salvia bowleyana HOM05D007484 ORTHO05D008290 2.0e-27 127.9 350 26.0
GSVIVG01003193001 Vitis vinifera HOM05D007484 ORTHO05D003151 1.9e-25 121.3 241 32.8
C06p16460 Brassica napus HOM05D007484 ORTHO05D008290 9.3e-25 119.0 114 56.1
Migut.M01212 Erythranthe guttata HOM05D007484 ORTHO05D008290 5.6e-22 109.8 436 24.3
PGSC0003DMG400022354 Solanum tuberosum HOM05D007484 ORTHO05D008290 1.1e-20 105.5 284 26.8
Actinidia26997 Actinidia chinensis HOM05D007484 ORTHO05D008290 1.5e-19 101.7 255 29.4
TPR.G4556 Trifolium pratense HOM05D007484 ORTHO05D008290 1.3e-18 98.6 177 28.2
CARHR053010 Cardamine hirsuta HOM05D007484 ORTHO05D008290 2.9e-18 97.4 67 65.7
BraA01t03150Z Brassica rapa HOM05D007484 ORTHO05D008290 8.4e-18 95.9 85 57.6
Cpa.g.sc27.126 Carica papaya HOM05D007484 ORTHO05D008290 2.4e-17 94.4 284 27.1
Dinv37215 Davidia involucrata HOM05D003242 ORTHO05D003593 2.4e-17 94.4 460 23.7
CDE05G1832 Ceratophyllum demersum HOM05D000051 ORTHO05D000493 2.1e-16 91.3 439 24.4
CARHR053000 Cardamine hirsuta HOM05D007484 ORTHO05D008290 3.5e-16 90.5 66 63.6
Aqoxy4G00512 Aquilegia oxysepala HOM05D000312 ORTHO05D000221 1.3e-15 88.6 419 24.3
Nn2g12888 Nelumbo nucifera HOM05D003242 ORTHO05D003593 1.1e-14 85.5 440 22.0
MBI02_g05998_MAGBIO Magnolia biondii HOM05D000312 ORTHO05D000368 1.5e-14 85.1 436 22.9
GSVIVG01025608001 Vitis vinifera HOM05D003242 ORTHO05D003593 4.3e-14 83.6 435 22.5
Duzib093G1770 Durio zibethinus HOM05D003242 ORTHO05D003593 1.1e-12 79.0 426 23.7
Lj2C101G9 Lonicera japonica HOM05D003242 ORTHO05D003593 1.4e-12 78.6 420 21.0
Thecc.06G199300 Theobroma cacao HOM05D007484 ORTHO05D008290 3.1e-12 77.4 203 29.1
Dinv39819 Davidia involucrata HOM05D001396 ORTHO05D000493 5.3e-12 76.6 448 23.9
TWI38G0929 Tripterygium wilfordii HOM05D003087 ORTHO05D003312 6.9e-12 76.3 420 23.6
Lj1C869T9 Lonicera japonica HOM05D003087 ORTHO05D003312 2.6e-11 74.3 444 21.6
Dinv39822 Davidia involucrata HOM05D001396 ORTHO05D000493 4.5e-11 73.6 203 28.6
PGR004G1577 Punica granatum HOM05D007484 ORTHO05D008290 5.8e-11 73.2 260 25.4
MSTRG.15934 Avicennia marina HOM05D007484 ORTHO05D008290 7.6e-11 72.8 136 27.9
Thhalv10015873m.g Eutrema salsugineum HOM05D000051 ORTHO05D000015 9.9e-11 72.4 426 22.8
Thhalv10005956m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 1.7e-10 71.6 453 21.0
MBI18_g07602_MAGBIO Magnolia biondii HOM05D000576 ORTHO05D008290 1.7e-10 71.6 485 21.0
Nn1g07075 Nelumbo nucifera HOM05D000051 ORTHO05D000015 1.7e-10 71.6 238 27.3
PSO478G1751 Papaver somniferum HOM05D000051 ORTHO05D000015 1.7e-10 71.6 272 25.7
CSS0019187 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 2.2e-10 71.2 441 23.4
Aqoxy2G00488 Aquilegia oxysepala HOM05D000312 ORTHO05D000221 2.9e-10 70.9 376 22.1
AT3G62230 Arabidopsis thaliana HOM05D003087 ORTHO05D003312 2.9e-10 70.9 445 22.0
CSS0033794 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 3.8e-10 70.5 440 22.7
Carub.0008s1678 Capsella rubella HOM05D000051 ORTHO05D000015 3.8e-10 70.5 423 22.5
MD03G1208600 Malus domestica HOM05D003087 ORTHO05D003312 3.8e-10 70.5 433 22.2
Medtr5g092960 Medicago truncatula HOM05D000051 ORTHO05D000015 3.8e-10 70.5 430 21.6
CSS0002318 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 4.9e-10 70.1 434 23.7
Aqoxy1G03313 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 8.4e-10 69.3 426 21.4
Nn1g06755 Nelumbo nucifera HOM05D001396 ORTHO05D000493 3.2e-09 67.4 454 21.6
Aa31LG1G12950 Aethionema arabicum HOM05D000051 ORTHO05D000015 4.2e-09 67.0 444 22.5
Thecc.05G046100 Theobroma cacao HOM05D003242 ORTHO05D003593 4.2e-09 67.0 481 22.7
RcHm_v2.0_Chr5g0028391 Rosa chinensis HOM05D000051 ORTHO05D000015 5.4e-09 66.6 427 23.0
TAR362G1194 Trochodendron aralioides HOM05D000576 ORTHO05D003312 5.4e-09 66.6 430 22.6
CSS0033868 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 7.1e-09 66.2 432 22.7
Aqoxy5G02413 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 1.2e-08 65.5 431 23.0
FAN19G2457 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.2e-08 65.5 438 22.4
LjContig00272g0016156 Lotus japonicus HOM05D003087 ORTHO05D003312 1.2e-08 65.5 448 22.5
Nn1g07083 Nelumbo nucifera HOM05D000576 ORTHO05D003312 1.2e-08 65.5 295 24.4
Thecc.05G046000 Theobroma cacao HOM05D003242 ORTHO05D003593 1.2e-08 65.5 442 21.3
TAR629G2777 Trochodendron aralioides HOM05D003087 ORTHO05D003312 1.2e-08 65.5 356 21.9
Rhsim06G0151200 Rhododendron simsii HOM05D000312 ORTHO05D000493 2.7e-08 64.3 218 27.5
Actinidia05111 Actinidia chinensis HOM05D003087 ORTHO05D003312 3.5e-08 63.9 427 21.1
AL2G39150 Arabidopsis lyrata HOM05D000051 ORTHO05D000015 3.5e-08 63.9 362 21.3
TAR633G2125 Trochodendron aralioides HOM05D000576 ORTHO05D000368 3.5e-08 63.9 460 23.5
FvH4_1g04280 Fragaria vesca HOM05D000576 ORTHO05D000368 4.6e-08 63.5 438 22.4
Prupe.6G249000 Prunus persica HOM05D003242 ORTHO05D003593 4.6e-08 63.5 429 21.9
Duzib213G0421 Durio zibethinus HOM05D000051 ORTHO05D000015 7.9e-08 62.8 454 19.6
QL07p046683 Quercus lobata HOM05D003242 ORTHO05D003593 7.9e-08 62.8 425 22.1
Aqoxy3G00472 Aquilegia oxysepala HOM05D000576 ORTHO05D000368 1.0e-07 62.4 370 22.2
FvH4_1g04270 Fragaria vesca HOM05D000576 ORTHO05D000368 1.0e-07 62.4 404 22.0
Oeu048256.1 Olea europaea HOM05D000576 ORTHO05D000368 1.8e-07 61.6 441 20.6
arahy.Tifrunner.gnm1.ann1.S3SMBV Arachis hypogaea HOM05D000312 ORTHO05D000221 2.3e-07 61.2 204 30.9
arahy.Tifrunner.gnm1.ann1.X6923X Arachis hypogaea HOM05D000312 ORTHO05D000221 2.3e-07 61.2 204 30.9
CDE02G0635 Ceratophyllum demersum HOM05D000312 ORTHO05D000493 2.3e-07 61.2 297 24.6
Lalb_Chr03g0040371 Lupinus albus HOM05D000576 ORTHO05D000368 2.3e-07 61.2 278 23.4
RcHm_v2.0_Chr3g0467581 Rosa chinensis HOM05D003242 ORTHO05D003593 2.3e-07 61.2 271 25.5
PSO478G2955 Papaver somniferum HOM05D000051 ORTHO05D000015 5.1e-07 60.1 244 25.4
Peaxi162Scf00853g00215 Petunia axillaris HOM05D000051 ORTHO05D011342 8.7e-07 59.3 434 24.0
Potri.002G132400 Populus trichocarpa HOM05D000312 ORTHO05D000221 8.7e-07 59.3 419 23.9
Hund26595 Selenicereus undatus HOM05D000312 ORTHO05D000221 1.1e-06 58.9 209 29.2
Dinv23710 Davidia involucrata HOM05D000051 ORTHO05D000493 1.5e-06 58.5 214 26.2
MBI18_g41461_MAGBIO Magnolia biondii HOM05D000051 ORTHO05D000015 1.9e-06 58.2 240 27.5
COL.COLO4_31539 Corchorus olitorius HOM05D001396 ORTHO05D000493 2.5e-06 57.8 365 22.7
Nitab4.5_0004837g0050 Nicotiana tabacum HOM05D000051 ORTHO05D000015 2.5e-06 57.8 199 30.2
CSS0023889 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 3.3e-06 57.4 365 24.1
PSO063G0158 Papaver somniferum HOM05D000051 ORTHO05D000015 3.3e-06 57.4 205 26.3
A03p04020 Brassica napus HOM05D002909 ORTHO05D000493 4.3e-06 57.0 198 26.3
Cpa.g.sc8.221 Carica papaya HOM05D003087 ORTHO05D003312 4.3e-06 57.0 377 23.1
FvH4_1g04271 Fragaria vesca HOM05D000576 ORTHO05D000368 4.3e-06 57.0 445 21.6
Medtr2g100570 Medicago truncatula HOM05D001477 ORTHO05D001182 4.3e-06 57.0 252 23.8
PSO384G1928 Papaver somniferum HOM05D000051 ORTHO05D000015 4.3e-06 57.0 131 32.1
DCAR_019502 Daucus carota HOM05D000312 ORTHO05D000221 5.6e-06 56.6 414 22.5
PGSC0003DMG400030061 Solanum tuberosum HOM05D000051 ORTHO05D011342 5.6e-06 56.6 183 28.4
Medtr1g016310 Medicago truncatula HOM05D000312 ORTHO05D000221 9.6e-06 55.8 209 26.3


User provided reference genes

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