Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10023849m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 9.2e-40 166.4 82 100.0
Thhalv10002727m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 8.1e-36 153.3 73 98.6
Thhalv10009367m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 5.3e-35 150.6 73 97.3
AL3G42530 Arabidopsis lyrata HOM05D006200 ORTHO05D007569 1.2e-34 149.4 73 94.5
Sp3g23500 Schrenkiella parvula HOM05D006200 ORTHO05D007569 1.2e-34 149.4 73 95.9
Thhalv10016039m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.5e-34 149.1 73 94.5
Thhalv10027363m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 2.0e-34 148.7 73 95.9
AT2G04900 Arabidopsis thaliana HOM05D006200 ORTHO05D007569 2.6e-34 148.3 73 93.2
BcaC06g35887 Brassica carinata HOM05D006200 ORTHO05D007569 5.8e-34 147.1 73 94.5
C07p10040 Brassica napus HOM05D006200 ORTHO05D007569 5.8e-34 147.1 73 94.5
BolC7t41451H Brassica oleracea HOM05D006200 ORTHO05D007569 5.8e-34 147.1 73 94.5
BraA07t28456Z Brassica rapa HOM05D006200 ORTHO05D007569 5.8e-34 147.1 73 94.5
BcaB06g26789 Brassica carinata HOM05D006200 ORTHO05D007569 9.9e-34 146.4 73 93.2
Carub.0003s2650 Capsella rubella HOM05D006200 ORTHO05D007569 1.3e-33 146.0 73 93.2
A07p06630 Brassica napus HOM05D006200 ORTHO05D007569 2.2e-33 145.2 73 93.2
CARHR102920 Cardamine hirsuta HOM05D006200 ORTHO05D007569 7.1e-32 140.2 73 89.0
THA.LOC104815354 Tarenaya hassleriana HOM05D006200 ORTHO05D007569 3.5e-31 137.9 67 94.0
Aa31sc107G30 Aethionema arabicum HOM05D006200 ORTHO05D007569 2.3e-30 135.2 74 82.4
TAR626G0047 Trochodendron aralioides HOM05D006200 ORTHO05D007569 1.2e-26 122.9 64 82.8
Haze_12649 Corylus avellana HOM05D006200 ORTHO05D007569 1.5e-26 122.5 64 84.4
Nn1g07469 Nelumbo nucifera HOM05D006200 ORTHO05D007569 4.5e-26 120.9 64 81.2
Nitab4.5_0001774g0080 Nicotiana tabacum HOM05D006200 ORTHO05D007569 4.5e-26 120.9 64 82.8
Potri.014G164500 Populus trichocarpa HOM05D006200 ORTHO05D007569 4.5e-26 120.9 64 81.2
Glyma.14G048700 Glycine max HOM05D006200 ORTHO05D007569 5.8e-26 120.6 64 79.7
Peaxi162Scf00776g00024 Petunia axillaris HOM05D006200 ORTHO05D007569 7.6e-26 120.2 64 82.8
TWI36G1668 Tripterygium wilfordii HOM05D006200 ORTHO05D007569 7.6e-26 120.2 64 79.7
Oeu040457.1 Olea europaea HOM05D006200 ORTHO05D007569 9.9e-26 119.8 64 82.8
Rhsim04G0037800 Rhododendron simsii HOM05D006200 ORTHO05D007569 9.9e-26 119.8 64 81.2
Hma1.2p1_0545F.1_g176060 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 1.3e-25 119.4 64 81.2
Cc05_g02100 Coffea canephora HOM05D006200 ORTHO05D007569 1.7e-25 119.0 64 79.7
Dinv05360 Davidia involucrata HOM05D006200 ORTHO05D007569 1.7e-25 119.0 64 82.8
QL08p028355 Quercus lobata HOM05D006200 ORTHO05D007569 1.7e-25 119.0 64 81.2
vmacro09406 Vaccinium macrocarpon HOM05D006200 ORTHO05D007569 1.7e-25 119.0 64 81.2
Hma1.2p1_2053F.1_g312740 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 2.2e-25 118.6 67 79.1
Phvul.008G213600 Phaseolus vulgaris HOM05D006200 ORTHO05D007569 2.2e-25 118.6 64 78.1
Prupe.3G200400 Prunus persica HOM05D006200 ORTHO05D007569 2.2e-25 118.6 64 81.2
MSTRG.14921 Avicennia marina HOM05D006200 ORTHO05D007569 2.9e-25 118.2 64 82.8
AUR62015021 Chenopodium quinoa HOM05D006200 ORTHO05D007569 2.9e-25 118.2 79 65.8
Glyma.02G268700 Glycine max HOM05D006200 ORTHO05D007569 2.9e-25 118.2 64 78.1
Aqoxy4G02230 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 3.8e-25 117.9 64 81.2
Ciclev10017136m.g Citrus clementina HOM05D006200 ORTHO05D007569 3.8e-25 117.9 75 76.0
MELO3C024201.2 Cucumis melo HOM05D006200 ORTHO05D007569 3.8e-25 117.9 70 74.3
Sed0012997 Sechium edule HOM05D006200 ORTHO05D007569 3.8e-25 117.9 62 83.9
AagrBONN_evm.TU.Sc2ySwM_368.977 Anthoceros agrestis HOM05D006200 ORTHO05D007569 4.9e-25 117.5 67 70.1
arahy.Tifrunner.gnm1.ann1.GBED9Y Arachis hypogaea HOM05D006200 ORTHO05D007569 4.9e-25 117.5 64 79.7
arahy.Tifrunner.gnm1.ann1.HJ95Y2 Arachis hypogaea HOM05D006200 ORTHO05D007569 4.9e-25 117.5 64 79.7
TPR.G25628 Trifolium pratense HOM05D006200 ORTHO05D007569 4.9e-25 117.5 64 79.7
CAN.G1036.6 Capsicum annuum HOM05D006200 ORTHO05D007569 6.4e-25 117.1 64 79.7
ClCG02G002790 Citrullus lanatus HOM05D006200 ORTHO05D007569 6.4e-25 117.1 64 79.7
LjContig00029g0002447 Lotus japonicus HOM05D006200 ORTHO05D007569 6.4e-25 117.1 63 79.4
MD17G1114500 Malus domestica HOM05D006200 ORTHO05D007569 8.4e-25 116.7 64 79.7
MD09G1123700 Malus domestica HOM05D006200 ORTHO05D007569 1.1e-24 116.3 64 79.7
Medtr5g085420 Medicago truncatula HOM05D006200 ORTHO05D007569 1.4e-24 115.9 64 79.7
Psat2g026360 Pisum sativum HOM05D006200 ORTHO05D007569 1.4e-24 115.9 64 81.2
Sed0007295 Sechium edule HOM05D006200 ORTHO05D007569 1.4e-24 115.9 64 78.1
Sopen07g024150 Solanum pennellii HOM05D006200 ORTHO05D007569 1.4e-24 115.9 64 75.0
HPP92_012226 Vanilla planifolia HOM05D006200 ORTHO05D007569 1.4e-24 115.9 64 78.1
Cfa014235 Carpinus fangiana HOM05D000160 ORTHO05D000496 1.9e-24 115.5 64 81.2
Cc02_g04700 Coffea canephora HOM05D006200 ORTHO05D007569 1.9e-24 115.5 64 76.6
Rhsim02G0017500 Rhododendron simsii HOM05D006200 ORTHO05D007569 2.4e-24 115.2 65 76.9
ATR0624G019 Amborella trichopoda HOM05D006200 ORTHO05D007569 3.2e-24 114.8 64 76.6
CiPaw.04G196600 Carya illinoinensis HOM05D006200 ORTHO05D007569 3.2e-24 114.8 64 79.7
Lsat_1_v5_gn_5_121761 Lactuca sativa HOM05D006200 ORTHO05D007569 3.2e-24 114.8 64 81.2
PGR042G1757 Punica granatum HOM05D006200 ORTHO05D007569 3.2e-24 114.8 67 74.6
SHI10134 Sapria himalayana HOM05D006200 ORTHO05D007569 3.2e-24 114.8 69 71.0
Solyc07g047700.4 Solanum lycopersicum HOM05D006200 ORTHO05D007569 3.2e-24 114.8 64 75.0
PGSC0003DMG400006126 Solanum tuberosum HOM05D006200 ORTHO05D007569 3.2e-24 114.8 64 75.0
Atru.chr6.3355 Acer truncatum HOM05D006200 ORTHO05D007569 4.2e-24 114.4 64 76.6
HanXRQChr10g0306841 Helianthus annuus HOM05D006200 ORTHO05D007569 4.2e-24 114.4 64 81.2
PSO675G7132 Papaver somniferum HOM05D006200 ORTHO05D007569 4.2e-24 114.4 64 75.0
Migut.M00041 Erythranthe guttata HOM05D006200 ORTHO05D007569 5.4e-24 114.0 64 78.1
FAN05G3226 Fragaria x ananassa HOM05D006200 ORTHO05D007569 5.4e-24 114.0 67 76.1
FAN09G2038 Fragaria x ananassa HOM05D006200 ORTHO05D007569 5.4e-24 114.0 67 76.1
Lalb_Chr04g0250001 Lupinus albus HOM05D006200 ORTHO05D007569 5.4e-24 114.0 64 78.1
DCAR_021101 Daucus carota HOM05D006200 ORTHO05D007569 9.3e-24 113.2 64 78.1
Sabra14G0125300 Salix brachista HOM05D006200 ORTHO05D007569 9.3e-24 113.2 65 73.8
SEGI_07661 Sequoiadendron giganteum HOM05D006200 ORTHO05D007569 9.3e-24 113.2 64 75.0
Manes.13G063700 Manihot esculenta HOM05D006200 ORTHO05D007569 1.2e-23 112.8 64 76.6
Actinidia09782 Actinidia chinensis HOM05D006200 ORTHO05D007569 1.6e-23 112.5 64 76.6
CDE07G1212 Ceratophyllum demersum HOM05D006200 ORTHO05D007569 1.6e-23 112.5 64 75.0
FAN14G5749 Fragaria x ananassa HOM05D006200 ORTHO05D007569 1.6e-23 112.5 67 74.6
PSO541G4622 Papaver somniferum HOM05D006200 ORTHO05D007569 1.6e-23 112.5 64 75.0
SalBow7G0450 Salvia bowleyana HOM05D006200 ORTHO05D007569 1.6e-23 112.5 64 75.0
SGA_v2.0_scaffold181G39681 Striga asiatica HOM05D006200 ORTHO05D007569 1.6e-23 112.5 64 78.1
FvH4_6g40890 Fragaria vesca HOM05D006200 ORTHO05D007569 2.1e-23 112.1 64 78.1
Zm00001eb057520 Zea mays HOM05D006200 ORTHO05D007569 2.1e-23 112.1 63 74.6
Cpa.g.sc136.18 Carica papaya HOM05D006200 ORTHO05D007569 2.7e-23 111.7 64 78.1
FAN02G1931 Fragaria x ananassa HOM05D006200 ORTHO05D007569 6.0e-23 110.5 64 76.6
Os03g0751000 Oryza sativa ssp. japonica HOM05D006200 ORTHO05D007569 6.0e-23 110.5 63 73.0
CSS0021565 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 7.9e-23 110.2 64 71.9
RcHm_v2.0_Chr2g0156461 Rosa chinensis HOM05D006200 ORTHO05D007569 7.9e-23 110.2 64 78.1
COL.COLO4_33018 Corchorus olitorius HOM05D006200 ORTHO05D007569 3.0e-22 108.2 72 68.1
Thecc.01G190500 Theobroma cacao HOM05D006200 ORTHO05D007569 5.1e-22 107.5 64 75.0
CANSAT64G0383 Cannabis sativa HOM05D006200 ORTHO05D007569 2.5e-21 105.1 64 68.8
Gohir.A07G167000 Gossypium hirsutum HOM05D006200 ORTHO05D007569 4.3e-21 104.4 64 73.4
Gohir.D07G172300 Gossypium hirsutum HOM05D006200 ORTHO05D007569 4.3e-21 104.4 64 73.4
Gorai.001G192600 Gossypium raimondii HOM05D006200 ORTHO05D007569 4.3e-21 104.4 64 73.4
Manes.12G061800 Manihot esculenta HOM05D006200 ORTHO05D007569 9.6e-21 103.2 66 68.2
Duzib138G0810 Durio zibethinus HOM05D006200 ORTHO05D007569 2.1e-20 102.1 64 67.2
GSVIVG01030518001 Vitis vinifera HOM05D006200 ORTHO05D007569 1.1e-19 99.8 59 71.2
GSVIVG01030523001 Vitis vinifera HOM05D006200 ORTHO05D007569 1.1e-19 99.8 59 71.2
Zm00001eb025380 Zea mays HOM05D006200 ORTHO05D007569 1.1e-19 99.8 63 66.7
SMO356G0472 Selaginella moellendorffii HOM05D006200 ORTHO05D007569 4.0e-19 97.8 60 66.7
Zm00001eb181090 Zea mays HOM05D006200 ORTHO05D007569 1.2e-18 96.3 62 67.7
Lj8A134G80 Lonicera japonica HOM05D006200 ORTHO05D007569 4.5e-18 94.4 50 84.0
CSS0018696 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 4.9e-17 90.9 52 75.0
ECA234G3013 Erigeron canadensis HOM05D006200 ORTHO05D007569 1.4e-16 89.4 50 82.0
MD17G1249100 Malus domestica HOM05D006200 ORTHO05D007569 1.9e-16 89.0 51 76.5
Eucgr.A01040 Eucalyptus grandis HOM05D006200 ORTHO05D007569 4.2e-16 87.8 50 76.0
AUR62029092 Chenopodium quinoa HOM05D006200 ORTHO05D007569 6.0e-15 84.0 48 75.0
Zm00001eb402120 Zea mays HOM05D006200 ORTHO05D007569 6.0e-15 84.0 60 65.0
Pp3c6_18880 Physcomitrium patens HOM05D006200 ORTHO05D007569 7.9e-15 83.6 63 52.4
MBI16_g28733_MAGBIO Magnolia biondii HOM05D006200 ORTHO05D007569 3.9e-14 81.3 51 68.6
Mapoly0007s0279 Marchantia polymorpha HOM05D006200 ORTHO05D007569 6.7e-14 80.5 60 58.3
Ah.01g013830 Amaranthus hybridus HOM05D004982 ORTHO05D007569 3.3e-13 78.2 48 68.8
Aqoxy5G00520 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 1.6e-12 75.9 40 82.5
Pp3c16_4930 Physcomitrium patens HOM05D006200 ORTHO05D007569 6.2e-12 73.9 68 50.0
Pp3c16_5110 Physcomitrium patens HOM05D006200 ORTHO05D007569 6.2e-12 73.9 68 50.0
Cre12.g543050 Chlamydomonas reinhardtii HOM05D006200 ORTHO05D007569 8.2e-12 73.6 58 55.2
Pp3c6_18900 Physcomitrium patens HOM05D006200 ORTHO05D007569 9.0e-11 70.1 50 60.0
Zm00001eb093000 Zea mays HOM05D006200 ORTHO05D007569 2.2e-09 65.5 33 78.8
RcHm_v2.0_Chr5g0026981 Rosa chinensis HOM05D006200 ORTHO05D007569 1.4e-08 62.8 37 70.3
TAR375G0899 Trochodendron aralioides HOM05D000612 ORTHO05D030704 1.8e-06 55.8 65 44.6


User provided reference genes

Program Settings