Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10023845m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 7.5e-250 866.7 428 100.0
Thhalv10023885m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 1.6e-236 822.4 448 92.4
Thhalv10024043m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 3.6e-204 714.9 448 81.2
Thhalv10023878m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 8.1e-204 713.8 449 81.3
Thhalv10023947m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 5.3e-203 711.1 405 87.7
Thhalv10024022m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 1.6e-180 636.3 448 73.0
Thhalv10024036m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 5.0e-161 571.6 448 68.1
Thhalv10023802m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 8.5e-153 544.3 421 67.7
BolC1t03792H Brassica oleracea HOM05D007484 ORTHO05D008290 1.5e-133 480.3 444 56.8
A01p30140 Brassica napus HOM05D007484 ORTHO05D008290 3.7e-132 475.7 427 57.1
C01p38280 Brassica napus HOM05D007484 ORTHO05D008290 4.9e-132 475.3 444 56.3
BraA01t03152Z Brassica rapa HOM05D007484 ORTHO05D008290 2.4e-131 473.0 427 56.9
BolC1t03787H Brassica oleracea HOM05D007484 ORTHO05D008290 5.4e-131 471.9 427 57.1
Thhalv10023839m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 7.8e-130 468.0 295 81.7
C06p16440 Brassica napus HOM05D007484 ORTHO05D008290 4.3e-128 462.2 444 55.4
BolC6t36847H Brassica oleracea HOM05D007484 ORTHO05D008290 4.3e-128 462.2 444 55.4
Sp2g03170 Schrenkiella parvula HOM05D007484 ORTHO05D008290 5.6e-128 461.8 421 57.2
AL2G15000 Arabidopsis lyrata HOM05D007484 ORTHO05D008290 2.0e-125 453.4 441 55.1
BcaC08g44240 Brassica carinata HOM05D007484 ORTHO05D008290 8.3e-124 448.0 444 54.3
AL2G15010 Arabidopsis lyrata HOM05D007484 ORTHO05D008290 2.0e-122 443.4 440 53.9
Carub.0002s1064 Capsella rubella HOM05D007484 ORTHO05D008290 7.8e-122 441.4 440 54.3
AT1G61320 Arabidopsis thaliana HOM05D007484 ORTHO05D008290 1.3e-121 440.7 442 54.8
Sp2g04890 Schrenkiella parvula HOM05D007484 ORTHO05D008290 2.5e-120 436.4 398 57.5
Carub.0002s1106 Capsella rubella HOM05D007484 ORTHO05D008290 2.8e-119 433.0 442 52.5
Carub.0002s1104 Capsella rubella HOM05D007484 ORTHO05D008290 1.1e-115 421.0 442 51.8
Carub.0005s0816 Capsella rubella HOM05D007484 ORTHO05D008290 1.6e-114 417.2 442 52.0
AT1G61330 Arabidopsis thaliana HOM05D007484 ORTHO05D008290 3.0e-113 412.9 443 51.2
BcaC08g44241 Brassica carinata HOM05D007484 ORTHO05D008290 5.2e-110 402.1 436 50.7
Thhalv10024091m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 1.7e-100 370.5 296 65.2
Sp2g04880 Schrenkiella parvula HOM05D007484 ORTHO05D008290 3.5e-98 362.8 428 49.5
Carub.0002s1107 Capsella rubella HOM05D007484 ORTHO05D008290 4.3e-88 329.3 298 58.1
CARHR051310 Cardamine hirsuta HOM05D007484 ORTHO05D008290 2.1e-87 327.0 298 56.4
C06p16450 Brassica napus HOM05D007484 ORTHO05D008290 9.0e-86 321.6 310 53.9
BolC6t36848H Brassica oleracea HOM05D007484 ORTHO05D008290 9.0e-86 321.6 310 53.9
A01p30150 Brassica napus HOM05D007484 ORTHO05D008290 1.3e-84 317.8 303 54.8
C01p38250 Brassica napus HOM05D007484 ORTHO05D008290 1.1e-83 314.7 407 45.2
Aa31LG2G9340 Aethionema arabicum HOM05D007484 ORTHO05D008290 2.7e-74 283.5 449 38.1
BcaB04g20332 Brassica carinata HOM05D007484 ORTHO05D008290 1.0e-73 281.6 329 48.9
THA.LOC104809547 Tarenaya hassleriana HOM05D007484 ORTHO05D008290 1.3e-73 281.2 427 36.1
CARHR053380 Cardamine hirsuta HOM05D007484 ORTHO05D008290 8.2e-63 245.4 207 62.8
QL04p018320 Quercus lobata HOM05D007484 ORTHO05D008290 5.1e-57 226.1 419 34.4
BraA01t03151Z Brassica rapa HOM05D007484 ORTHO05D008290 5.0e-52 209.5 209 50.7
Haze_06572 Corylus avellana HOM05D007484 ORTHO05D008290 7.2e-51 205.7 417 32.9
Eucgr.D00711 Eucalyptus grandis HOM05D007484 ORTHO05D008290 1.2e-50 204.9 412 32.0
Dinv40482 Davidia involucrata HOM05D007484 ORTHO05D008290 1.6e-50 204.5 409 32.0
Cfa000354 Carpinus fangiana HOM05D007484 ORTHO05D008290 1.4e-49 201.4 417 32.1
Sabra11G0029500 Salix brachista HOM05D007484 ORTHO05D008290 9.7e-48 195.3 419 32.0
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 4.1e-46 189.9 411 29.9
Potri.011G042900 Populus trichocarpa HOM05D007484 ORTHO05D008290 4.5e-45 186.4 429 31.5
Lalb_Chr20g0122271 Lupinus albus HOM05D007484 ORTHO05D008290 5.9e-45 186.0 429 30.5
Medtr7g076760 Medicago truncatula HOM05D007484 ORTHO05D008290 5.0e-44 183.0 432 29.4
Medtr7g076570 Medicago truncatula HOM05D007484 ORTHO05D008290 2.7e-42 177.2 426 28.2
TAR626G0438 Trochodendron aralioides HOM05D007484 ORTHO05D008290 6.1e-42 176.0 407 31.2
Thhalv10023890m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 1.8e-41 174.5 135 61.5
Potri.004G034500 Populus trichocarpa HOM05D007484 ORTHO05D008290 3.9e-41 173.3 412 29.1
Glyma.13G246100 Glycine max HOM05D007484 ORTHO05D008290 5.7e-40 169.5 424 26.9
Rhsim13G0170100 Rhododendron simsii HOM05D007484 ORTHO05D008290 5.7e-40 169.5 447 27.5
Atru.chr10.2009 Acer truncatum HOM05D007484 ORTHO05D008290 7.4e-40 169.1 400 28.8
TWI63G0466 Tripterygium wilfordii HOM05D007484 ORTHO05D008290 2.4e-38 164.1 405 28.9
Actinidia26998 Actinidia chinensis HOM05D007484 ORTHO05D008290 5.3e-38 162.9 423 28.4
PGR004G1436 Punica granatum HOM05D007484 ORTHO05D008290 1.2e-37 161.8 420 26.2
Duzib192G0019 Durio zibethinus HOM05D007484 ORTHO05D008290 2.6e-37 160.6 335 29.9
Medtr7g050670 Medicago truncatula HOM05D007484 ORTHO05D008290 2.6e-37 160.6 419 27.0
VMungo0540G2082 Vigna mungo HOM05D007484 ORTHO05D008290 2.6e-37 160.6 421 27.6
Prupe.4G036700 Prunus persica HOM05D007484 ORTHO05D008290 4.5e-37 159.8 411 29.0
Medtr4g088845 Medicago truncatula HOM05D007484 ORTHO05D008290 6.5e-36 156.0 414 26.6
Nn1g06758 Nelumbo nucifera HOM05D007484 ORTHO05D008290 1.1e-35 155.2 403 27.0
Phvul.006G192000 Phaseolus vulgaris HOM05D007484 ORTHO05D008290 3.6e-34 150.2 427 26.7
Peaxi162Scf00083g00015 Petunia axillaris HOM05D007484 ORTHO05D008290 4.4e-32 143.3 431 24.8
Lj6g0012024 Lotus japonicus HOM05D007484 ORTHO05D008290 2.2e-31 141.0 409 25.7
CANSAT56G1153 Cannabis sativa HOM05D007484 ORTHO05D008290 2.8e-31 140.6 415 25.8
Aqoxy4G00756 Aquilegia oxysepala HOM05D007484 ORTHO05D008290 8.3e-31 139.0 426 26.8
TWI38G1471 Tripterygium wilfordii HOM05D007484 ORTHO05D008290 3.1e-30 137.1 348 28.4
Solyc02g079120.1 Solanum lycopersicum HOM05D007484 ORTHO05D008290 1.6e-29 134.8 434 24.9
Peaxi162Scf00149g00517 Petunia axillaris HOM05D007484 ORTHO05D008290 5.0e-28 129.8 420 23.1
PGSC0003DMG400043893 Solanum tuberosum HOM05D007484 ORTHO05D008290 8.5e-28 129.0 449 24.7
PGSC0003DMG400037537 Solanum tuberosum HOM05D007484 ORTHO05D008290 1.1e-27 128.6 434 25.6
GSVIVG01003193001 Vitis vinifera HOM05D007484 ORTHO05D003151 1.9e-27 127.9 241 34.0
MD10G1303300 Malus domestica HOM05D007484 ORTHO05D008290 3.2e-27 127.1 417 27.3
C06p16460 Brassica napus HOM05D007484 ORTHO05D008290 4.7e-26 123.2 114 57.0
CARHR053390 Cardamine hirsuta HOM05D007484 ORTHO05D008290 1.0e-25 122.1 137 45.3
Migut.M01212 Erythranthe guttata HOM05D007484 ORTHO05D008290 8.8e-25 119.0 416 25.7
SGA_v2.0_scaffold739G53544 Striga asiatica HOM05D007484 ORTHO05D008290 2.0e-24 117.9 385 24.7
Nitab4.5_0009994g0020 Nicotiana tabacum HOM05D007484 ORTHO05D008290 2.6e-24 117.5 429 24.2
Nitab4.5_0000190g0090 Nicotiana tabacum HOM05D007484 ORTHO05D008290 1.4e-22 111.7 440 23.2
BraA01t03150Z Brassica rapa HOM05D007484 ORTHO05D008290 4.2e-19 100.1 85 58.8
Cpa.g.sc27.122 Carica papaya HOM05D007484 ORTHO05D008290 5.5e-19 99.8 289 26.6
Cpa.g.sc27.126 Carica papaya HOM05D007484 ORTHO05D008290 2.1e-18 97.8 290 27.6
CARHR053010 Cardamine hirsuta HOM05D007484 ORTHO05D008290 6.1e-18 96.3 67 65.7
Dinv37215 Davidia involucrata HOM05D003242 ORTHO05D003593 1.5e-16 91.7 453 23.4
CDE05G1832 Ceratophyllum demersum HOM05D000051 ORTHO05D000493 4.4e-16 90.1 435 24.6
PGSC0003DMG400022354 Solanum tuberosum HOM05D007484 ORTHO05D008290 5.7e-16 89.7 284 24.6
CARHR053000 Cardamine hirsuta HOM05D007484 ORTHO05D008290 7.5e-16 89.4 66 63.6
Aqoxy4G00512 Aquilegia oxysepala HOM05D000312 ORTHO05D000221 8.3e-15 85.9 416 24.0
Nn2g12888 Nelumbo nucifera HOM05D003242 ORTHO05D003593 8.3e-15 85.9 437 22.9
TAR362G1194 Trochodendron aralioides HOM05D000576 ORTHO05D003312 5.4e-14 83.2 410 24.1
Nn1g03911 Nelumbo nucifera HOM05D000576 ORTHO05D003312 1.2e-13 82.0 367 24.0
Nn1g07075 Nelumbo nucifera HOM05D000051 ORTHO05D000015 1.2e-13 82.0 238 28.6
Thecc.06G199300 Theobroma cacao HOM05D007484 ORTHO05D008290 2.0e-13 81.3 204 29.9
GSVIVG01025608001 Vitis vinifera HOM05D003242 ORTHO05D003593 2.7e-13 80.9 432 22.2
Rhsim06G0151200 Rhododendron simsii HOM05D000312 ORTHO05D000493 7.8e-13 79.3 439 23.2
Dinv39819 Davidia involucrata HOM05D001396 ORTHO05D000493 1.0e-12 79.0 428 24.5
Aqoxy1G03313 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 1.7e-12 78.2 423 22.5
Lj2C101G9 Lonicera japonica HOM05D003242 ORTHO05D003593 1.7e-12 78.2 408 21.1
TPR.G4556 Trifolium pratense HOM05D007484 ORTHO05D008290 2.3e-12 77.8 116 31.9
Lj1C869T9 Lonicera japonica HOM05D003087 ORTHO05D003312 5.0e-12 76.6 440 22.0
Nitab4.5_0004837g0050 Nicotiana tabacum HOM05D000051 ORTHO05D000015 6.6e-12 76.3 407 24.1
Duzib093G1770 Durio zibethinus HOM05D003242 ORTHO05D003593 8.6e-12 75.9 424 23.6
Hund26595 Selenicereus undatus HOM05D000312 ORTHO05D000221 1.1e-11 75.5 421 24.5
Dinv39822 Davidia involucrata HOM05D001396 ORTHO05D000493 1.5e-11 75.1 203 29.1
Carub.0008s1678 Capsella rubella HOM05D000051 ORTHO05D000015 2.5e-11 74.3 409 22.7
LjContig00272g0016156 Lotus japonicus HOM05D003087 ORTHO05D003312 2.5e-11 74.3 424 23.6
AT3G62230 Arabidopsis thaliana HOM05D003087 ORTHO05D003312 3.3e-11 73.9 439 23.2
MD03G1208600 Malus domestica HOM05D003087 ORTHO05D003312 3.3e-11 73.9 422 22.7
TWI38G0929 Tripterygium wilfordii HOM05D003087 ORTHO05D003312 3.3e-11 73.9 416 23.6
Actinidia26997 Actinidia chinensis HOM05D007484 ORTHO05D008290 4.3e-11 73.6 154 34.4
Duzib213G0421 Durio zibethinus HOM05D000051 ORTHO05D000015 9.5e-11 72.4 454 19.8
Oeu024369.3 Olea europaea HOM05D003242 ORTHO05D003593 9.5e-11 72.4 371 21.8
Nn1g07083 Nelumbo nucifera HOM05D000576 ORTHO05D003312 2.1e-10 71.2 440 22.5
Aqoxy2G00488 Aquilegia oxysepala HOM05D000312 ORTHO05D000221 2.8e-10 70.9 367 23.4
Thhalv10005956m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 2.8e-10 70.9 443 21.4
PSO478G1751 Papaver somniferum HOM05D000051 ORTHO05D000015 2.8e-10 70.9 236 28.0
CSS0002318 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 4.7e-10 70.1 422 23.9
CSS0019187 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 4.7e-10 70.1 430 24.0
RcHm_v2.0_Chr5g0028391 Rosa chinensis HOM05D000051 ORTHO05D000015 4.7e-10 70.1 422 23.2
Nn1g06755 Nelumbo nucifera HOM05D001396 ORTHO05D000493 6.2e-10 69.7 447 21.9
Aqoxy3G00472 Aquilegia oxysepala HOM05D000576 ORTHO05D000368 8.0e-10 69.3 357 23.2
Aa31LG3G10740 Aethionema arabicum HOM05D003087 ORTHO05D003312 1.4e-09 68.6 414 24.6
Thhalv10015873m.g Eutrema salsugineum HOM05D000051 ORTHO05D000015 1.4e-09 68.6 419 22.0
Peaxi162Scf00853g00215 Petunia axillaris HOM05D000051 ORTHO05D011342 1.4e-09 68.6 431 25.3
CSS0033794 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 1.8e-09 68.2 433 23.8
Thecc.05G046100 Theobroma cacao HOM05D003242 ORTHO05D003593 2.3e-09 67.8 489 22.7
Lalb_Chr03g0040371 Lupinus albus HOM05D000576 ORTHO05D000368 3.1e-09 67.4 278 23.7
TAR629G2777 Trochodendron aralioides HOM05D003087 ORTHO05D003312 4.0e-09 67.0 352 22.4
arahy.Tifrunner.gnm1.ann1.S3SMBV Arachis hypogaea HOM05D000312 ORTHO05D000221 5.2e-09 66.6 204 31.9
arahy.Tifrunner.gnm1.ann1.X6923X Arachis hypogaea HOM05D000312 ORTHO05D000221 5.2e-09 66.6 204 31.9
CDE02G0635 Ceratophyllum demersum HOM05D000312 ORTHO05D000493 5.2e-09 66.6 248 27.0
Potri.002G132400 Populus trichocarpa HOM05D000312 ORTHO05D000221 6.8e-09 66.2 412 25.5
PGR004G1577 Punica granatum HOM05D007484 ORTHO05D008290 6.8e-09 66.2 246 27.2
MBI18_g41461_MAGBIO Magnolia biondii HOM05D000051 ORTHO05D000015 8.9e-09 65.9 239 28.0
LjContig00272g0016451 Lotus japonicus HOM05D003087 ORTHO05D003312 1.2e-08 65.5 430 22.3
CARHR117950 Cardamine hirsuta HOM05D003087 ORTHO05D003312 1.5e-08 65.1 442 21.3
Prupe.6G249000 Prunus persica HOM05D003242 ORTHO05D003593 1.5e-08 65.1 425 22.4
CSS0033868 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 2.0e-08 64.7 421 23.3
Dinv20164 Davidia involucrata HOM05D000051 ORTHO05D000015 2.0e-08 64.7 422 22.3
Cpa.g.sc8.221 Carica papaya HOM05D003087 ORTHO05D003312 3.4e-08 63.9 374 23.5
Dinv23710 Davidia involucrata HOM05D000051 ORTHO05D000493 3.4e-08 63.9 214 27.1
DCAR_019502 Daucus carota HOM05D000312 ORTHO05D000221 4.4e-08 63.5 410 23.4
Thecc.05G046000 Theobroma cacao HOM05D003242 ORTHO05D003593 4.4e-08 63.5 436 21.3
Thhalv10029130m.g Eutrema salsugineum HOM05D005918 ORTHO05D008619 5.8e-08 63.2 455 21.5
Actinidia05111 Actinidia chinensis HOM05D003087 ORTHO05D003312 7.5e-08 62.8 423 20.6
AL2G39150 Arabidopsis lyrata HOM05D000051 ORTHO05D000015 7.5e-08 62.8 357 21.0
PSO384G1928 Papaver somniferum HOM05D000051 ORTHO05D000015 7.5e-08 62.8 260 28.8
QL07p046683 Quercus lobata HOM05D003242 ORTHO05D003593 9.8e-08 62.4 422 21.6
FAN19G2457 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.3e-07 62.0 424 21.5
Aa31LG1G12950 Aethionema arabicum HOM05D000051 ORTHO05D000015 1.7e-07 61.6 251 25.9
PSO063G0158 Papaver somniferum HOM05D000051 ORTHO05D000015 2.2e-07 61.2 205 26.8
Peaxi162Scf00188g00543 Petunia axillaris HOM05D000312 ORTHO05D000221 2.2e-07 61.2 251 25.1
CSS0023889 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 2.9e-07 60.8 276 25.7
PGSC0003DMG400029597 Solanum tuberosum HOM05D000312 ORTHO05D000221 2.9e-07 60.8 260 23.8
Cfa000258 Carpinus fangiana HOM05D000051 ORTHO05D000015 3.7e-07 60.5 274 25.9
Medtr1g016310 Medicago truncatula HOM05D000312 ORTHO05D000221 3.7e-07 60.5 209 27.3
FvH4_1g04280 Fragaria vesca HOM05D000576 ORTHO05D000368 4.9e-07 60.1 424 21.5
Medtr2g100570 Medicago truncatula HOM05D001477 ORTHO05D001182 4.9e-07 60.1 252 23.8
RcHm_v2.0_Chr3g0449591 Rosa chinensis HOM05D000576 ORTHO05D000368 4.9e-07 60.1 429 20.7
CSS0037667 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 6.4e-07 59.7 417 20.4
PGSC0003DMG400030061 Solanum tuberosum HOM05D000051 ORTHO05D011342 8.3e-07 59.3 259 25.5
vmacro12263 Vaccinium macrocarpon HOM05D000312 ORTHO05D000493 8.3e-07 59.3 246 25.2
Lj4A46T100 Lonicera japonica HOM05D000312 ORTHO05D000221 1.1e-06 58.9 208 26.4
MD11G1223200 Malus domestica HOM05D003087 ORTHO05D003312 1.4e-06 58.5 426 20.7
Hma1.2p1_0144F.1_g064660 Hydrangea macrophylla HOM05D001396 ORTHO05D000493 1.9e-06 58.2 274 22.3
TPR.G20555 Trifolium pratense HOM05D008175 ORTHO05D010403 1.9e-06 58.2 168 33.3
PSO478G2955 Papaver somniferum HOM05D000051 ORTHO05D000015 2.4e-06 57.8 248 25.8
AUR62015679 Chenopodium quinoa HOM05D000051 ORTHO05D000015 3.2e-06 57.4 256 26.2
A03p04020 Brassica napus HOM05D002909 ORTHO05D000493 7.0e-06 56.2 198 25.8
Oeu027723.1 Olea europaea HOM05D000051 ORTHO05D000015 7.0e-06 56.2 227 26.0
vmacro04489 Vaccinium macrocarpon HOM05D000312 ORTHO05D000221 9.2e-06 55.8 203 29.1


User provided reference genes

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