Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10023706m.g Eutrema salsugineum HOM05D006745 ORTHO05D008449 1.7e-105 386.0 193 100.0
Sp2g00830 Schrenkiella parvula HOM05D006745 ORTHO05D008449 5.8e-93 344.4 190 89.5
AT1G63855 Arabidopsis thaliana HOM05D006745 ORTHO05D008449 1.9e-91 339.3 192 88.0
AL2G11270 Arabidopsis lyrata HOM05D006745 ORTHO05D008449 2.1e-90 335.9 216 78.7
A09p13970 Brassica napus HOM05D006745 ORTHO05D008449 2.3e-89 332.4 217 79.3
Carub.0002s0099 Capsella rubella HOM05D006745 ORTHO05D008449 1.5e-88 329.7 217 76.5
BolC9t54579H Brassica oleracea HOM05D006745 ORTHO05D008449 2.8e-87 325.5 216 77.8
BcaC04g22678 Brassica carinata HOM05D006745 ORTHO05D008449 8.2e-87 323.9 216 77.3
BcaB07g31542 Brassica carinata HOM05D006745 ORTHO05D008449 1.1e-86 323.6 217 77.4
BcaC04g22675 Brassica carinata HOM05D006745 ORTHO05D008449 3.8e-84 315.1 219 75.8
Aa31LG2G1020 Aethionema arabicum HOM05D006745 ORTHO05D008449 3.9e-81 305.1 213 73.2
THA.LOC104817830 Tarenaya hassleriana HOM05D006745 ORTHO05D008449 5.1e-81 304.7 214 71.0
Atru.chr3.895 Acer truncatum HOM05D006745 ORTHO05D008449 9.4e-75 283.9 187 76.5
Ciclev10026368m.g Citrus clementina HOM05D006745 ORTHO05D008449 9.4e-75 283.9 214 67.8
arahy.Tifrunner.gnm1.ann1.DU2BQF Arachis hypogaea HOM05D006745 ORTHO05D008449 2.1e-74 282.7 213 65.7
arahy.Tifrunner.gnm1.ann1.EE1FTG Arachis hypogaea HOM05D006745 ORTHO05D008449 2.1e-74 282.7 213 65.7
QL06p051396 Quercus lobata HOM05D006745 ORTHO05D008449 2.7e-74 282.3 212 67.0
CiPaw.07G062000 Carya illinoinensis HOM05D006745 ORTHO05D008449 6.1e-74 281.2 193 71.5
HanXRQChr16g0531741 Helianthus annuus HOM05D006745 ORTHO05D008449 2.3e-73 279.3 215 67.0
Glyma.01G163200 Glycine max HOM05D006745 ORTHO05D008449 3.0e-73 278.9 217 65.4
TPR.G25110 Trifolium pratense HOM05D006745 ORTHO05D008449 6.7e-73 277.7 217 65.9
VMungo1215G1582 Vigna mungo HOM05D006745 ORTHO05D008449 8.8e-73 277.3 212 66.0
Medtr5g022860 Medicago truncatula HOM05D006745 ORTHO05D008449 1.1e-72 276.9 217 65.9
RcHm_v2.0_Chr2g0098641 Rosa chinensis HOM05D006745 ORTHO05D008449 1.1e-72 276.9 213 65.7
Cfa007050 Carpinus fangiana HOM05D006745 ORTHO05D008449 1.5e-72 276.6 212 67.0
Psat2g152400 Pisum sativum HOM05D006745 ORTHO05D008449 1.5e-72 276.6 217 66.4
FAN19G0356 Fragaria x ananassa HOM05D006745 ORTHO05D008449 2.0e-72 276.2 213 65.7
Phvul.002G105300 Phaseolus vulgaris HOM05D006745 ORTHO05D008449 2.0e-72 276.2 218 64.7
Oeu058205.1 Olea europaea HOM05D006745 ORTHO05D008449 4.3e-72 275.0 212 67.0
Oeu058207.1 Olea europaea HOM05D006745 ORTHO05D008449 4.3e-72 275.0 212 67.0
Nn6g31942 Nelumbo nucifera HOM05D006745 ORTHO05D008449 1.3e-71 273.5 210 63.8
Potri.005G109000 Populus trichocarpa HOM05D006745 ORTHO05D008449 2.8e-71 272.3 213 65.3
Ca_24936_v3 Cicer arietinum L. HOM05D006745 ORTHO05D008449 3.7e-71 271.9 217 66.4
Lsat_1_v5_gn_3_71521 Lactuca sativa HOM05D006745 ORTHO05D008449 3.7e-71 271.9 208 66.3
Lj2g0007566 Lotus japonicus HOM05D006745 ORTHO05D008449 4.8e-71 271.6 216 63.9
GSVIVG01007224001 Vitis vinifera HOM05D006745 ORTHO05D008449 4.8e-71 271.6 213 62.9
AUR62003702 Chenopodium quinoa HOM05D006745 ORTHO05D008449 8.2e-71 270.8 213 63.4
vmacro18434 Vaccinium macrocarpon HOM05D006745 ORTHO05D008449 8.2e-71 270.8 212 64.6
TWI73G1304 Tripterygium wilfordii HOM05D006745 ORTHO05D008449 1.1e-70 270.4 212 64.6
FAN23G2677 Fragaria x ananassa HOM05D006745 ORTHO05D008449 1.4e-70 270.0 212 64.6
CANSAT01G0215 Cannabis sativa HOM05D006745 ORTHO05D008449 1.8e-70 269.6 213 65.7
Gohir.A11G041100 Gossypium hirsutum HOM05D006745 ORTHO05D008449 6.9e-70 267.7 212 64.2
Gohir.D11G044400 Gossypium hirsutum HOM05D006745 ORTHO05D008449 6.9e-70 267.7 212 64.6
Gorai.007G047700 Gossypium raimondii HOM05D006745 ORTHO05D008449 6.9e-70 267.7 212 64.6
MD15G1238900 Malus domestica HOM05D006745 ORTHO05D008449 9.1e-70 267.3 213 62.9
Actinidia28725 Actinidia chinensis HOM05D006745 ORTHO05D008449 1.2e-69 266.9 213 62.0
FAN26G1827 Fragaria x ananassa HOM05D006745 ORTHO05D008449 1.5e-69 266.5 214 64.5
Solyc02g061950.4 Solanum lycopersicum HOM05D006745 ORTHO05D008449 1.5e-69 266.5 212 63.2
MELO3C007934.2 Cucumis melo HOM05D006745 ORTHO05D008449 2.0e-69 266.2 214 61.2
Manes.01G150100 Manihot esculenta HOM05D006745 ORTHO05D008449 2.0e-69 266.2 213 63.4
Sed0008453 Sechium edule HOM05D006745 ORTHO05D008449 2.0e-69 266.2 215 60.9
CSS0026839 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 5.9e-69 264.6 206 63.6
CsaV3_6G047410 Cucumis sativus L. HOM05D006745 ORTHO05D008449 5.9e-69 264.6 211 61.1
ECA246G0119 Erigeron canadensis HOM05D006745 ORTHO05D008449 5.9e-69 264.6 211 66.8
PGSC0003DMG401023885 Solanum tuberosum HOM05D006745 ORTHO05D008449 7.7e-69 264.2 212 62.3
PGR119G0426 Punica granatum HOM05D006745 ORTHO05D008449 1.0e-68 263.8 220 61.4
Lj2A482T63 Lonicera japonica HOM05D006745 ORTHO05D008449 2.2e-68 262.7 211 62.6
CAN.G576.2 Capsicum annuum HOM05D006745 ORTHO05D008449 3.8e-68 261.9 212 62.3
Sopen02g012910 Solanum pennellii HOM05D006745 ORTHO05D008449 3.8e-68 261.9 212 61.8
Rhsim08G0031100 Rhododendron simsii HOM05D006745 ORTHO05D008449 5.0e-68 261.5 208 62.0
EL10Ac6g15168 Beta vulgaris HOM05D006745 ORTHO05D008449 6.5e-68 261.2 210 63.8
CSS0046970 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 8.5e-68 260.8 206 62.6
Eucgr.I02315 Eucalyptus grandis HOM05D006745 ORTHO05D008449 1.1e-67 260.4 215 61.9
Ah.02g123330 Amaranthus hybridus HOM05D006745 ORTHO05D008449 1.4e-67 260.0 204 65.2
PSO675G1483 Papaver somniferum HOM05D006745 ORTHO05D008449 1.9e-67 259.6 205 61.5
Sc22g0002270 Simmondsia chinensis HOM05D006745 ORTHO05D008449 2.5e-67 259.2 213 58.7
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 4.2e-67 258.5 197 66.5
Atru.chr3.884 Acer truncatum HOM05D006745 ORTHO05D008449 5.5e-67 258.1 163 77.3
Cc07_g11200 Coffea canephora HOM05D006745 ORTHO05D008449 7.2e-67 257.7 188 67.0
SGA_v2.0_scaffold77G25309 Striga asiatica HOM05D006745 ORTHO05D008449 1.6e-66 256.5 212 60.8
Migut.N00678 Erythranthe guttata HOM05D006745 ORTHO05D008449 2.7e-66 255.8 215 60.9
Lalb_Chr09g0321491 Lupinus albus HOM05D006745 ORTHO05D008449 2.7e-66 255.8 212 63.7
PSO541G1183 Papaver somniferum HOM05D006745 ORTHO05D008449 2.7e-66 255.8 216 58.8
Nitab4.5_0000188g0160 Nicotiana tabacum HOM05D006745 ORTHO05D008449 1.0e-65 253.8 242 53.7
Sabra05G0089300 Salix brachista HOM05D006745 ORTHO05D008449 1.0e-65 253.8 207 62.8
FAN28G2493 Fragaria x ananassa HOM05D006745 ORTHO05D008449 2.3e-65 252.7 211 63.5
Os02g0120300 Oryza sativa ssp. japonica HOM05D006745 ORTHO05D008449 2.3e-65 252.7 214 60.3
Zm00001eb229980 Zea mays HOM05D006745 ORTHO05D008449 3.9e-65 251.9 217 58.5
DCAR_023133 Daucus carota HOM05D006745 ORTHO05D008449 5.7e-64 248.1 214 58.9
Prupe.7G173600 Prunus persica HOM05D006745 ORTHO05D008449 9.7e-64 247.3 213 62.0
ATR0661G256 Amborella trichopoda HOM05D006745 ORTHO05D008449 3.1e-62 242.3 213 54.0
HPP92_012950 Vanilla planifolia HOM05D006745 ORTHO05D008449 1.5e-61 240.0 210 58.6
Aqoxy6G02103 Aquilegia oxysepala HOM05D006745 ORTHO05D008449 5.9e-61 238.0 220 54.1
unitig_60.g25574 Utricularia gibba HOM05D006745 ORTHO05D008449 2.9e-60 235.7 256 50.4
Thecc.01G012900 Theobroma cacao HOM05D006745 ORTHO05D008449 3.2e-59 232.3 213 59.2
Duzib147G0156 Durio zibethinus HOM05D006745 ORTHO05D008449 6.1e-58 228.0 210 58.1
SalBow3G1250 Salvia bowleyana HOM05D006745 ORTHO05D008449 2.3e-57 226.1 203 61.6
ClCG01G020530 Citrullus lanatus HOM05D006745 ORTHO05D008449 2.8e-55 219.2 236 51.3
AUR62018011 Chenopodium quinoa HOM05D006745 ORTHO05D008449 6.3e-55 218.0 187 61.0
FvH4_1g11230 Fragaria vesca HOM05D006745 ORTHO05D008449 2.0e-53 213.0 138 73.9
Cpa.g.sc29.52 Carica papaya HOM05D006745 ORTHO05D008449 2.2e-52 209.5 141 71.6
Nitab4.5_0002337g0130 Nicotiana tabacum HOM05D006745 ORTHO05D008449 6.1e-50 201.4 137 67.2
Pp3c3_3170 Physcomitrium patens HOM05D006745 ORTHO05D008449 2.3e-49 199.5 209 47.8
CARHR047310 Cardamine hirsuta HOM05D006745 ORTHO05D008449 4.0e-49 198.7 150 68.0
BraA09t37044Z Brassica rapa HOM05D006745 ORTHO05D008449 3.4e-48 195.7 112 89.3
Peaxi162Scf00439g00049 Petunia axillaris HOM05D006745 ORTHO05D008449 3.4e-48 195.7 260 46.2
SMO340G0117 Selaginella moellendorffii HOM05D006745 ORTHO05D008449 5.7e-48 194.9 208 47.6
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 2.0e-45 186.4 209 45.5
CDE05G1799 Ceratophyllum demersum HOM05D006745 ORTHO05D008449 2.9e-44 182.6 159 56.6
CSS0012608 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 2.5e-43 179.5 182 54.9
CARHR047280 Cardamine hirsuta HOM05D006745 ORTHO05D008449 8.0e-42 174.5 219 47.9
Sed0011409 Sechium edule HOM05D006745 ORTHO05D008449 8.8e-41 171.0 247 41.7
Pp3c3_3178 Physcomitrium patens HOM05D006745 ORTHO05D008449 7.5e-40 167.9 209 45.0
Aqoxy278s001 Aquilegia oxysepala HOM05D006745 ORTHO05D008449 9.8e-40 167.5 191 47.6
arahy.Tifrunner.gnm1.ann1.N8WRPV Arachis hypogaea HOM05D006745 ORTHO05D008449 1.2e-34 150.6 126 60.3
MSTRG.17961 Avicennia marina HOM05D006745 ORTHO05D008449 1.6e-34 150.2 104 72.1
Glyma.02G164500 Glycine max HOM05D006745 ORTHO05D008449 8.0e-34 147.9 200 44.0
Rhsim01G0268300 Rhododendron simsii HOM05D006745 ORTHO05D008449 1.3e-28 130.6 94 64.9
Hund14069 Selenicereus undatus HOM05D006745 ORTHO05D008449 4.3e-27 125.6 137 52.6
Medtr2g078490 Medicago truncatula HOM05D006745 ORTHO05D008449 1.4e-25 120.6 93 68.8
Medtr3g096570 Medicago truncatula HOM05D006745 ORTHO05D008449 1.5e-24 117.1 115 55.7
Medtr3g096562 Medicago truncatula HOM05D006745 ORTHO05D008449 2.9e-23 112.8 120 55.8
SEGI_40099 Sequoiadendron giganteum HOM05D006745 ORTHO05D008449 2.4e-22 109.8 82 63.4
BolC4t24505H Brassica oleracea HOM05D006745 ORTHO05D008449 1.0e-20 104.4 59 86.4
COL.COLO4_22483 Corchorus olitorius HOM05D006745 ORTHO05D008449 3.2e-14 82.8 46 84.8
Glyma.11G080201 Glycine max HOM05D006745 ORTHO05D008449 6.0e-13 78.6 62 59.7
SEGI_27117 Sequoiadendron giganteum HOM05D001602 ORTHO05D001470 1.2e-10 70.9 155 34.8
BcaNung04367 Brassica carinata HOM05D002553 ORTHO05D002767 1.2e-08 64.3 137 33.6
MCO09G596 Micromonas commoda HOM05D002956 ORTHO05D008031 5.8e-08 62.0 120 31.7
CDE08G1662 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 9.9e-08 61.2 140 32.9
Oeu027750.2 Olea europaea HOM05D001602 ORTHO05D001470 9.9e-08 61.2 140 32.9
Aqoxy2G00391 Aquilegia oxysepala HOM05D001602 ORTHO05D001470 1.7e-07 60.5 143 30.8
BcaB03g15706 Brassica carinata HOM05D001602 ORTHO05D001470 2.2e-07 60.1 141 31.9
Ciclev10003913m.g Citrus clementina HOM05D002553 ORTHO05D002767 2.2e-07 60.1 129 34.9
Pp3c27_4830 Physcomitrium patens HOM05D002553 ORTHO05D002767 2.2e-07 60.1 156 28.8
CiPaw.07G014700 Carya illinoinensis HOM05D002553 ORTHO05D002767 2.9e-07 59.7 127 32.3
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 2.9e-07 59.7 133 31.6
EL10Ac4g09667 Beta vulgaris HOM05D001602 ORTHO05D001470 3.7e-07 59.3 114 34.2
BcaNung02464 Brassica carinata HOM05D002553 ORTHO05D002767 3.7e-07 59.3 137 32.1
C07p40730 Brassica napus HOM05D002553 ORTHO05D002767 3.7e-07 59.3 137 32.1
BolC7t44601H Brassica oleracea HOM05D002553 ORTHO05D002767 3.7e-07 59.3 137 32.1
Nitab4.5_0000242g0140 Nicotiana tabacum HOM05D001602 ORTHO05D001470 3.7e-07 59.3 140 32.9
PGSC0003DMG400014616 Solanum tuberosum HOM05D001602 ORTHO05D001470 3.7e-07 59.3 142 33.8
TAR633G1107 Trochodendron aralioides HOM05D002553 ORTHO05D002767 3.7e-07 59.3 140 30.0
Thhalv10018937m.g Eutrema salsugineum HOM05D001602 ORTHO05D001470 4.9e-07 58.9 141 30.5
Solyc08g014040.3 Solanum lycopersicum HOM05D001602 ORTHO05D001470 4.9e-07 58.9 142 33.8
Sopen08g004920 Solanum pennellii HOM05D001602 ORTHO05D001470 4.9e-07 58.9 142 33.8
THA.LOC104811422 Tarenaya hassleriana HOM05D001602 ORTHO05D001470 4.9e-07 58.9 141 29.8
C06p34070 Brassica napus HOM05D001602 ORTHO05D001470 6.4e-07 58.5 141 30.5
A06p37580 Brassica napus HOM05D002553 ORTHO05D002767 8.4e-07 58.2 137 32.1
BraA06t26677Z Brassica rapa HOM05D002553 ORTHO05D002767 8.4e-07 58.2 137 32.1
CARHR066370 Cardamine hirsuta HOM05D001602 ORTHO05D001470 8.4e-07 58.2 141 29.8
Pp3c1_38340 Physcomitrium patens HOM05D005677 ORTHO05D006966 8.4e-07 58.2 114 37.7
DCAR_005441 Daucus carota HOM05D001602 ORTHO05D001470 1.1e-06 57.8 137 31.4
Pp3c10_13020 Physcomitrium patens HOM05D001602 ORTHO05D001470 1.1e-06 57.8 122 34.4
SalBow2G2154 Salvia bowleyana HOM05D001602 ORTHO05D001470 1.1e-06 57.8 140 32.9
VMungo0464G1375 Vigna mungo HOM05D001602 ORTHO05D001470 1.1e-06 57.8 128 32.8
AL2G33080 Arabidopsis lyrata HOM05D001602 ORTHO05D001470 1.4e-06 57.4 141 29.8
ECA238G2267 Erigeron canadensis HOM05D002553 ORTHO05D002767 1.4e-06 57.4 134 32.1
Phvul.004G136600 Phaseolus vulgaris HOM05D001602 ORTHO05D001470 1.4e-06 57.4 128 32.8
Phvul.006G093933 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 1.4e-06 57.4 131 29.8
MSTRG.4296 Avicennia marina HOM05D001602 ORTHO05D001470 1.9e-06 57.0 137 31.4
HanXRQChr14g0445961 Helianthus annuus HOM05D002553 ORTHO05D002767 1.9e-06 57.0 140 30.7
Lsat_1_v5_gn_2_67941 Lactuca sativa HOM05D002553 ORTHO05D002767 1.9e-06 57.0 120 31.7
Nn3g18545 Nelumbo nucifera HOM05D001602 ORTHO05D001470 1.9e-06 57.0 124 30.6
Sp5g28250 Schrenkiella parvula HOM05D001602 ORTHO05D001470 1.9e-06 57.0 141 30.5
TPR.G31348 Trifolium pratense HOM05D001602 ORTHO05D001470 1.9e-06 57.0 141 32.6
vmacro17753 Vaccinium macrocarpon HOM05D001602 ORTHO05D001470 1.9e-06 57.0 140 31.4
A07p29850 Brassica napus HOM05D001602 ORTHO05D001470 2.4e-06 56.6 141 30.5
BolC6t38522H Brassica oleracea HOM05D001602 ORTHO05D001470 2.4e-06 56.6 141 29.8
BraA07t30623Z Brassica rapa HOM05D000058 ORTHO05D000255 2.4e-06 56.6 141 30.5
Gohir.D08G180900 Gossypium hirsutum HOM05D001602 ORTHO05D001470 2.4e-06 56.6 109 34.9
Gorai.004G189800 Gossypium raimondii HOM05D001602 ORTHO05D001470 2.4e-06 56.6 109 34.9
PGR044G0265 Punica granatum HOM05D001602 ORTHO05D001470 2.4e-06 56.6 141 29.8
SMO118G0160 Selaginella moellendorffii HOM05D001602 ORTHO05D001470 2.4e-06 56.6 86 43.0
Sc09g0003350 Simmondsia chinensis HOM05D002553 ORTHO05D002767 2.4e-06 56.6 123 28.5
Ah.02g126730 Amaranthus hybridus HOM05D001602 ORTHO05D001470 3.2e-06 56.2 120 32.5
BcaC08g45650 Brassica carinata HOM05D001602 ORTHO05D001470 3.2e-06 56.2 141 29.8
Thhalv10003627m.g Eutrema salsugineum HOM05D002553 ORTHO05D002767 3.2e-06 56.2 137 32.1
Carub.0002s2007 Capsella rubella HOM05D001602 ORTHO05D001470 4.1e-06 55.8 141 29.8
Ca_25281_v3 Cicer arietinum L. HOM05D001602 ORTHO05D001470 4.1e-06 55.8 117 32.5
CAN.G466.9 Capsicum annuum HOM05D001602 ORTHO05D001470 5.4e-06 55.5 142 32.4
Eucgr.K02332 Eucalyptus grandis HOM05D001602 ORTHO05D001470 5.4e-06 55.5 141 29.8
Glyma.16G128200 Glycine max HOM05D001602 ORTHO05D001470 5.4e-06 55.5 128 31.2
Mapoly0059s0066 Marchantia polymorpha HOM05D001602 ORTHO05D001470 5.4e-06 55.5 112 36.6
SGA_v2.0_scaffold17G08162 Striga asiatica HOM05D001602 ORTHO05D001470 5.4e-06 55.5 140 30.0
Migut.G01316 Erythranthe guttata HOM05D001602 ORTHO05D001470 7.1e-06 55.1 140 33.6
Os07g0641600 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D008031 7.1e-06 55.1 117 29.9
THA.LOC104818678 Tarenaya hassleriana HOM05D002553 ORTHO05D002767 7.1e-06 55.1 134 33.6
Zm00001eb295360 Zea mays HOM05D001602 ORTHO05D001470 7.1e-06 55.1 125 33.6
Haze_18406 Corylus avellana HOM05D000219 ORTHO05D000226 9.2e-06 54.7 141 29.1
Gohir.A08G160600 Gossypium hirsutum HOM05D001602 ORTHO05D001470 9.2e-06 54.7 109 34.9
Hma1.2p1_0666F.1_g199460 Hydrangea macrophylla HOM05D002553 ORTHO05D002767 9.2e-06 54.7 134 30.6
TWI81G0762 Tripterygium wilfordii HOM05D001602 ORTHO05D001470 9.2e-06 54.7 141 31.2


User provided reference genes

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