Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10023654m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 6.7e-118 427.6 248 100.0
Sp2g03290 Schrenkiella parvula HOM05D004441 ORTHO05D003109 5.9e-90 334.7 250 75.6
AT1G61170 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 1.3e-89 333.6 250 74.4
AL2G15180 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 2.3e-89 332.8 250 74.8
BraA01t03127Z Brassica rapa HOM05D004441 ORTHO05D003109 2.3e-89 332.8 251 74.9
BcaC09g49327 Brassica carinata HOM05D004441 ORTHO05D003109 5.0e-89 331.6 251 74.5
C01p37890 Brassica napus HOM05D004441 ORTHO05D003109 5.0e-89 331.6 251 74.5
BolC1t03749H Brassica oleracea HOM05D004441 ORTHO05D003109 5.0e-89 331.6 251 74.5
A01p29970 Brassica napus HOM05D004441 ORTHO05D003109 3.6e-87 325.5 251 73.3
Carub.0002s0400 Capsella rubella HOM05D004441 ORTHO05D003109 1.7e-84 316.6 252 71.0
BcaC02g10584 Brassica carinata HOM05D004441 ORTHO05D003109 6.0e-82 308.1 249 70.3
C04p27200 Brassica napus HOM05D004441 ORTHO05D003109 6.0e-82 308.1 249 70.3
BolC4t24251H Brassica oleracea HOM05D004441 ORTHO05D003109 6.0e-82 308.1 249 70.3
BcaC06g31839 Brassica carinata HOM05D004441 ORTHO05D003109 1.9e-80 303.1 235 72.3
CARHR051480 Cardamine hirsuta HOM05D004441 ORTHO05D003109 3.3e-80 302.4 247 71.3
BcaB04g20321 Brassica carinata HOM05D004441 ORTHO05D003109 8.0e-79 297.7 249 71.1
A03p66730 Brassica napus HOM05D004441 ORTHO05D003109 1.8e-78 296.6 249 68.3
BraA01t02809Z Brassica rapa HOM05D004441 ORTHO05D003109 1.8e-78 296.6 249 68.3
Aa31LG2G9430 Aethionema arabicum HOM05D004441 ORTHO05D003109 2.2e-52 209.9 208 63.5
Thhalv10024164m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 3.0e-41 172.9 118 81.4
Sp1g09810 Schrenkiella parvula HOM05D004441 ORTHO05D003109 1.8e-38 163.7 274 51.5
Thhalv10008484m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 2.2e-36 156.8 272 47.1
AL1G22120 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 7.9e-34 148.3 273 51.6
A06p07830 Brassica napus HOM05D004441 ORTHO05D003109 6.7e-33 145.2 283 44.2
BraA06t23983Z Brassica rapa HOM05D004441 ORTHO05D003109 6.7e-33 145.2 283 44.2
AT1G11125 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 2.1e-31 140.2 273 48.0
THA.LOC104809557 Tarenaya hassleriana HOM05D004441 ORTHO05D003109 1.4e-30 137.5 300 42.0
C05p09410 Brassica napus HOM05D004441 ORTHO05D003109 3.4e-29 132.9 196 52.0
BolC5t29682H Brassica oleracea HOM05D004441 ORTHO05D003109 4.5e-29 132.5 196 52.0
Aa31LG1G3780 Aethionema arabicum HOM05D004441 ORTHO05D003109 3.5e-26 122.9 288 42.7
CARHR011330 Cardamine hirsuta HOM05D004441 ORTHO05D003109 7.9e-26 121.7 264 43.2
BraA09t41810Z Brassica rapa HOM05D004441 ORTHO05D003109 1.8e-25 120.6 268 43.7
Carub.0001s1070 Capsella rubella HOM05D004441 ORTHO05D003109 3.0e-25 119.8 279 45.9
C08p48340 Brassica napus HOM05D004441 ORTHO05D003109 8.7e-25 118.2 270 42.2
BolC8t52373H Brassica oleracea HOM05D004441 ORTHO05D003109 8.7e-25 118.2 270 42.2
BcaC07g41791 Brassica carinata HOM05D004441 ORTHO05D003109 7.4e-24 115.2 271 44.3
A09p64850 Brassica napus HOM05D004441 ORTHO05D003109 3.7e-23 112.8 268 42.9
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 2.6e-21 106.7 240 41.2
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 5.9e-21 105.5 236 44.1
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.2e-20 103.6 240 40.4
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 8.5e-20 101.7 240 38.8
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 1.1e-19 101.3 202 44.6
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 7.2e-19 98.6 250 40.0
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 2.1e-18 97.1 245 40.4
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 1.8e-17 94.0 243 39.1
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 1.1e-16 91.3 249 36.5
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 1.5e-16 90.9 182 44.0
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 7.4e-16 88.6 277 35.7
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 1.7e-15 87.4 193 44.0
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 3.7e-15 86.3 234 42.3
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 3.7e-15 86.3 234 42.3
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 8.2e-15 85.1 189 42.3
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 1.4e-14 84.3 272 34.9
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 1.4e-14 84.3 250 35.2
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 1.8e-14 84.0 192 40.6
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.4e-14 83.6 234 39.7
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 1.5e-13 80.9 213 37.6
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 1.5e-13 80.9 183 42.6
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 2.0e-13 80.5 220 39.5
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 2.6e-13 80.1 276 35.9
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 2.6e-13 80.1 276 35.9
Potri.004G037100 Populus trichocarpa HOM05D004441 ORTHO05D003109 1.0e-12 78.2 254 37.4
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.0e-12 78.2 194 36.6
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 2.9e-12 76.6 212 39.2
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 3.8e-12 76.3 195 38.5
Ciclev10015894m.g Citrus clementina HOM05D004441 ORTHO05D003109 1.1e-11 74.7 213 38.5
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 1.1e-11 74.7 281 33.1
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 1.4e-11 74.3 260 35.8
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 1.4e-11 74.3 207 38.6
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 1.4e-11 74.3 195 39.0
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 1.9e-11 73.9 303 33.7
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 5.5e-11 72.4 171 42.7
Sopen02g023590 Solanum pennellii HOM05D004441 ORTHO05D003109 7.2e-11 72.0 211 37.0
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 9.4e-11 71.6 228 38.2
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 9.4e-11 71.6 261 31.4
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 2.1e-10 70.5 208 38.9
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 2.1e-10 70.5 253 34.4
PGSC0003DMG400022372 Solanum tuberosum HOM05D004441 ORTHO05D003109 2.1e-10 70.5 214 35.5
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 2.7e-10 70.1 240 35.8
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 4.7e-10 69.3 227 37.9
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 6.1e-10 68.9 280 31.8
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 6.1e-10 68.9 190 36.8
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 6.1e-10 68.9 174 38.5
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 6.1e-10 68.9 196 36.2
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 1.0e-09 68.2 217 35.0
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.0e-09 68.2 189 38.6
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 1.4e-09 67.8 190 37.4
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 1.8e-09 67.4 234 33.3
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 3.0e-09 66.6 219 34.7
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 5.1e-09 65.9 197 37.1
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 8.8e-09 65.1 202 36.6
Atru.chr10.1971 Acer truncatum HOM05D004441 ORTHO05D003109 2.6e-08 63.5 202 34.7
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 3.3e-08 63.2 183 39.9
Sabra04G0022600 Salix brachista HOM05D004441 ORTHO05D003109 5.7e-08 62.4 251 33.1
Solyc08g068460.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 5.7e-08 62.4 168 36.9
Manes.16G023200 Manihot esculenta HOM05D004441 ORTHO05D003109 9.7e-08 61.6 242 33.9
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 1.7e-07 60.8 204 37.3
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 3.7e-07 59.7 230 33.0
Nn1g06687 Nelumbo nucifera HOM05D004441 ORTHO05D003109 4.8e-07 59.3 172 36.6
Phvul.002G224300 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 4.8e-07 59.3 217 35.9
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 6.3e-07 58.9 186 36.0
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 6.3e-07 58.9 194 35.6
ECA234G2831 Erigeron canadensis HOM05D004441 ORTHO05D003109 8.2e-07 58.5 242 32.2
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 8.2e-07 58.5 189 34.4
Cpa.g.sc27.93 Carica papaya HOM05D004441 ORTHO05D003109 1.1e-06 58.2 193 34.2
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 1.1e-06 58.2 203 36.5
PGR042G3342 Punica granatum HOM05D004441 ORTHO05D003109 1.4e-06 57.8 170 41.8
Cfa000385 Carpinus fangiana HOM05D004441 ORTHO05D003109 2.4e-06 57.0 244 32.0
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 2.4e-06 57.0 185 37.8
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 4.1e-06 56.2 206 29.1
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 4.1e-06 56.2 273 31.9
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 4.1e-06 56.2 273 31.9
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 5.3e-06 55.8 193 38.3
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 5.3e-06 55.8 242 30.6
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 5.3e-06 55.8 242 30.6
Solyc07g054560.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 7.0e-06 55.5 168 32.7
Ca_20682_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 9.1e-06 55.1 193 32.1
Lalb_Chr18g0059831 Lupinus albus HOM05D004441 ORTHO05D003109 9.1e-06 55.1 178 35.4
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 9.1e-06 55.1 272 30.9


User provided reference genes

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