Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 1.6e-138 496.1 262 100.0
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 1.9e-102 376.3 264 79.9
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 1.3e-100 370.2 260 78.8
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 7.4e-99 364.4 261 77.0
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 7.4e-99 364.4 264 77.7
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 1.4e-97 360.1 259 76.4
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 3.8e-95 352.1 250 78.4
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 2.5e-91 339.3 252 76.2
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 2.2e-79 299.7 269 69.1
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 2.5e-70 269.6 267 63.7
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 9.4e-70 267.7 265 66.0
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 3.4e-43 179.5 294 47.6
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 3.4e-43 179.5 294 47.6
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 1.7e-42 177.2 296 47.3
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 1.7e-42 177.2 296 46.3
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 1.1e-41 174.5 296 46.6
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 3.9e-39 166.0 298 45.3
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 1.1e-38 164.5 296 44.9
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 6.2e-37 158.7 301 45.2
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 1.8e-36 157.1 290 46.2
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 4.0e-36 156.0 297 42.4
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 6.6e-31 138.7 318 36.2
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 4.0e-28 129.4 195 47.2
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 3.4e-27 126.3 155 53.5
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 4.9e-26 122.5 179 46.4
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 1.1e-25 121.3 148 51.4
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 1.4e-25 120.9 170 48.2
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 5.4e-25 119.0 155 52.3
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 5.4e-25 119.0 155 52.3
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 5.4e-25 119.0 170 48.2
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.1e-24 117.1 155 51.6
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 7.8e-24 115.2 157 48.4
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 7.8e-24 115.2 157 48.4
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 3.0e-23 113.2 155 46.5
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 3.0e-23 113.2 157 47.1
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.0e-23 113.2 157 47.8
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 3.0e-23 113.2 146 47.9
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 5.1e-23 112.5 167 46.1
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 1.5e-22 110.9 152 48.7
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 1.9e-22 110.5 145 49.7
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 3.3e-22 109.8 156 50.0
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 7.3e-22 108.6 140 50.0
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 9.6e-22 108.2 181 44.2
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 1.2e-21 107.8 167 46.1
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 2.1e-21 107.1 157 44.6
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 3.6e-21 106.3 161 47.2
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 3.6e-21 106.3 171 42.7
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 4.7e-21 105.9 157 43.9
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 8.1e-21 105.1 163 46.0
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 1.1e-20 104.8 160 45.0
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 1.1e-20 104.8 164 44.5
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 1.1e-20 104.8 174 44.8
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 1.4e-20 104.4 206 40.8
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 1.4e-20 104.4 160 43.8
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 1.4e-20 104.4 154 47.4
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 2.4e-20 103.6 168 42.9
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 6.8e-20 102.1 157 45.9
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 1.2e-19 101.3 171 41.5
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 1.5e-19 100.9 159 42.8
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 1.5e-19 100.9 159 42.8
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.5e-19 100.9 179 41.3
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 1.5e-19 100.9 150 45.3
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 1.5e-19 100.9 157 42.0
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 2.6e-19 100.1 124 52.4
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 3.4e-19 99.8 158 44.3
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 5.8e-19 99.0 147 45.6
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 5.8e-19 99.0 163 41.1
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 9.9e-19 98.2 160 43.8
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 9.9e-19 98.2 157 43.3
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 1.3e-18 97.8 155 47.1
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 1.7e-18 97.4 242 36.8
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 2.2e-18 97.1 184 41.3
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 6.4e-18 95.5 197 37.1
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 6.4e-18 95.5 161 42.9
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 6.4e-18 95.5 170 42.9
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 1.1e-17 94.7 167 40.1
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.9e-17 94.0 184 37.5
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 2.4e-17 93.6 148 45.3
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 2.4e-17 93.6 180 40.6
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 2.4e-17 93.6 158 38.0
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 2.4e-17 93.6 137 46.0
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 3.2e-17 93.2 156 43.6
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.2e-17 93.2 139 44.6
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.2e-17 93.2 139 44.6
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 4.2e-17 92.8 149 45.6
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 4.2e-17 92.8 194 41.2
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 9.3e-17 91.7 171 40.4
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 1.2e-16 91.3 170 37.1
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.2e-16 91.3 151 45.0
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 1.2e-16 91.3 167 44.9
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 1.2e-16 91.3 148 42.6
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 1.2e-16 91.3 166 41.0
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 3.5e-16 89.7 177 39.0
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 4.6e-16 89.4 172 40.1
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 7.8e-16 88.6 165 40.6
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.0e-15 88.2 168 41.7
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 1.3e-15 87.8 194 36.6
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 1.7e-15 87.4 160 41.9
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 3.0e-15 86.7 159 40.9
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 5.1e-15 85.9 173 39.3
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 5.1e-15 85.9 163 38.7
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 6.6e-15 85.5 172 40.1
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 6.6e-15 85.5 172 40.1
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 1.9e-14 84.0 142 44.4
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 2.5e-14 83.6 144 39.6
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 3.3e-14 83.2 152 38.2
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 4.3e-14 82.8 188 37.2
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 5.6e-14 82.4 148 43.2
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 7.3e-14 82.0 154 37.7
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 1.6e-13 80.9 167 38.9
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 3.6e-13 79.7 159 40.3
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 3.6e-13 79.7 198 36.4
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 4.8e-13 79.3 147 39.5
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 6.2e-13 79.0 202 33.2
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 6.2e-13 79.0 124 45.2
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 2.9e-10 70.1 161 35.4
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 8.4e-10 68.6 97 39.2
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 8.4e-10 68.6 87 48.3
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 1.1e-09 68.2 96 42.7
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 1.4e-09 67.8 150 39.3
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 1.4e-09 67.8 157 33.8
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 1.4e-09 67.8 150 36.7
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 2.4e-09 67.0 97 38.1
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 2.4e-09 67.0 85 49.4
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 4.2e-09 66.2 98 51.0
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 5.4e-09 65.9 96 39.6
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 7.1e-09 65.5 152 36.2
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 1.2e-08 64.7 78 46.2
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.6e-08 64.3 107 43.0
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 1.3e-07 61.2 120 39.2
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 3.0e-07 60.1 136 39.0
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 1.5e-06 57.8 101 39.6
Gohir.A02G102000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.5e-06 57.0 128 37.5
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 7.3e-06 55.5 110 40.0
Gohir.D03G082400 Gossypium hirsutum HOM05D005006 ORTHO05D005903 9.6e-06 55.1 128 36.7
Gorai.003G081300 Gossypium raimondii HOM05D005006 ORTHO05D005903 9.6e-06 55.1 128 36.7


User provided reference genes

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