Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10023632m.g Eutrema salsugineum HOM05D006416 ORTHO05D008054 4.6e-139 498.0 284 100.0
SpUn0002_0460 Schrenkiella parvula HOM05D006416 ORTHO05D008054 1.7e-133 479.6 285 89.8
BcaC09g49606 Brassica carinata HOM05D006416 ORTHO05D008054 1.2e-131 473.4 285 89.1
A01p27150 Brassica napus HOM05D006416 ORTHO05D008054 1.2e-131 473.4 285 89.1
C01p34560 Brassica napus HOM05D006416 ORTHO05D008054 1.2e-131 473.4 285 89.1
BolC1t03427H Brassica oleracea HOM05D006416 ORTHO05D008054 1.2e-131 473.4 285 89.1
BraA01t02850Z Brassica rapa HOM05D006416 ORTHO05D008054 1.2e-131 473.4 285 89.1
BcaB04g20144 Brassica carinata HOM05D006416 ORTHO05D008054 3.6e-131 471.9 286 88.5
AT1G54780 Arabidopsis thaliana HOM05D006416 ORTHO05D008054 4.5e-126 454.9 287 85.7
AL1G65240 Arabidopsis lyrata HOM05D006416 ORTHO05D008054 2.9e-125 452.2 287 84.7
CARHR055910 Cardamine hirsuta HOM05D006416 ORTHO05D008054 5.0e-125 451.4 286 84.3
Carub.0002s0864 Capsella rubella HOM05D006416 ORTHO05D008054 8.0e-123 444.1 287 83.3
Aa31LG2G11890 Aethionema arabicum HOM05D006416 ORTHO05D008054 4.1e-119 431.8 293 80.5
THA.LOC104823736 Tarenaya hassleriana HOM05D006416 ORTHO05D008054 5.2e-114 414.8 298 76.2
Haze_04238 Corylus avellana HOM05D006416 ORTHO05D008054 4.8e-112 408.3 290 74.1
FvH4_6g05320 Fragaria vesca HOM05D006416 ORTHO05D008054 3.1e-111 405.6 291 74.9
FAN14G2526 Fragaria x ananassa HOM05D006416 ORTHO05D008054 3.1e-111 405.6 291 74.9
QL03p004338 Quercus lobata HOM05D006416 ORTHO05D008054 5.4e-111 404.8 294 73.8
FAN02G3793 Fragaria x ananassa HOM05D006416 ORTHO05D008054 7.0e-111 404.4 291 74.6
Cfa006543 Carpinus fangiana HOM05D006416 ORTHO05D008054 9.1e-111 404.1 298 71.8
FAN05G2936 Fragaria x ananassa HOM05D006416 ORTHO05D008054 9.1e-111 404.1 291 74.6
FAN14G3791 Fragaria x ananassa HOM05D006416 ORTHO05D008054 9.1e-111 404.1 291 74.6
MELO3C004307.2 Cucumis melo HOM05D006416 ORTHO05D008054 2.0e-110 402.9 297 72.4
Glyma.10G157100 Glycine max HOM05D006416 ORTHO05D008054 2.7e-110 402.5 294 73.8
FAN05G0060 Fragaria x ananassa HOM05D006416 ORTHO05D008054 3.5e-110 402.1 291 74.2
Glyma.20G231600 Glycine max HOM05D006416 ORTHO05D008054 4.5e-110 401.7 294 74.5
Potri.013G026400 Populus trichocarpa HOM05D006416 ORTHO05D008054 5.9e-110 401.4 296 73.6
EL10Ac4g09303 Beta vulgaris HOM05D006416 ORTHO05D008054 7.7e-110 401.0 297 71.4
FAN09G2836 Fragaria x ananassa HOM05D006416 ORTHO05D008054 7.7e-110 401.0 291 74.2
Sed0000831 Sechium edule HOM05D006416 ORTHO05D008054 1.7e-109 399.8 289 75.1
RcHm_v2.0_Chr3g0454061 Rosa chinensis HOM05D006416 ORTHO05D008054 3.8e-109 398.7 291 74.2
ClCG02G016070 Citrullus lanatus HOM05D006416 ORTHO05D008054 5.0e-109 398.3 299 71.6
Potri.005G038700 Populus trichocarpa HOM05D006416 ORTHO05D008054 8.5e-109 397.5 293 72.7
arahy.Tifrunner.gnm1.ann1.L7FLNG Arachis hypogaea HOM05D006416 ORTHO05D008054 1.1e-108 397.1 243 84.4
Gorai.007G294200 Gossypium raimondii HOM05D006416 ORTHO05D008054 1.1e-108 397.1 296 71.6
Prupe.6G330400 Prunus persica HOM05D006416 ORTHO05D008054 1.1e-108 397.1 296 71.3
Thecc.05G308500 Theobroma cacao HOM05D006416 ORTHO05D008054 1.1e-108 397.1 296 72.3
CANSAT54G1414 Cannabis sativa HOM05D006416 ORTHO05D008054 1.5e-108 396.7 298 72.5
Manes.09G163500 Manihot esculenta HOM05D006416 ORTHO05D008054 1.5e-108 396.7 296 70.6
Gohir.A11G262900 Gossypium hirsutum HOM05D006416 ORTHO05D008054 1.9e-108 396.4 296 72.0
Gohir.D11G272900 Gossypium hirsutum HOM05D006416 ORTHO05D008054 1.9e-108 396.4 296 72.0
arahy.Tifrunner.gnm1.ann1.ICF70N Arachis hypogaea HOM05D006416 ORTHO05D008054 2.5e-108 396.0 292 73.6
Cpa.g.sc48.9 Carica papaya HOM05D006416 ORTHO05D008054 2.5e-108 396.0 299 71.2
MD12G1224000 Malus domestica HOM05D006416 ORTHO05D008054 2.5e-108 396.0 292 72.3
MD04G1209400 Malus domestica HOM05D006416 ORTHO05D008054 3.2e-108 395.6 292 71.9
Atru.chr2.491 Acer truncatum HOM05D006416 ORTHO05D008054 5.5e-108 394.8 300 71.7
Eucgr.H04456 Eucalyptus grandis HOM05D006416 ORTHO05D008054 5.5e-108 394.8 292 72.6
Lj9A681T37 Lonicera japonica HOM05D006416 ORTHO05D008054 5.5e-108 394.8 297 72.4
Sabra05G0037800 Salix brachista HOM05D006416 ORTHO05D008054 7.2e-108 394.4 294 72.8
Duzib128G1696 Durio zibethinus HOM05D006416 ORTHO05D008054 9.4e-108 394.0 296 72.0
Ah.06g190130 Amaranthus hybridus HOM05D006416 ORTHO05D008054 1.2e-107 393.7 297 72.1
Phvul.007G182400 Phaseolus vulgaris HOM05D006416 ORTHO05D008054 1.2e-107 393.7 293 72.0
Ca_10088_v3 Cicer arietinum L. HOM05D006416 ORTHO05D008054 2.1e-107 392.9 290 72.1
Ciclev10002001m.g Citrus clementina HOM05D006416 ORTHO05D008054 2.1e-107 392.9 300 70.0
Duzib177G0710 Durio zibethinus HOM05D006416 ORTHO05D008054 4.7e-107 391.7 296 72.3
Lalb_Chr06g0167821 Lupinus albus HOM05D006416 ORTHO05D008054 6.1e-107 391.3 294 72.4
TPR.G2722 Trifolium pratense HOM05D006416 ORTHO05D008054 1.0e-106 390.6 286 71.3
COL.COLO4_13518 Corchorus olitorius HOM05D006416 ORTHO05D008054 1.8e-106 389.8 299 70.2
PGR031G2709 Punica granatum HOM05D006416 ORTHO05D008054 3.0e-106 389.0 287 71.8
Rhsim07G0179600 Rhododendron simsii HOM05D006416 ORTHO05D008054 3.0e-106 389.0 296 70.6
Actinidia23608 Actinidia chinensis HOM05D006416 ORTHO05D008054 4.0e-106 388.7 298 69.8
Psat6g148880 Pisum sativum HOM05D006416 ORTHO05D008054 4.0e-106 388.7 290 71.4
GSVIVG01000004001 Vitis vinifera HOM05D006416 ORTHO05D008054 4.0e-106 388.7 298 71.8
CiPaw.08G166800 Carya illinoinensis HOM05D006416 ORTHO05D008054 1.2e-105 387.1 296 70.3
DCAR_029435 Daucus carota HOM05D006416 ORTHO05D008054 1.2e-105 387.1 235 83.4
Medtr1g082420 Medicago truncatula HOM05D006416 ORTHO05D008054 4.4e-105 385.2 290 71.4
TWI12G1406 Tripterygium wilfordii HOM05D006416 ORTHO05D008054 4.4e-105 385.2 293 71.0
SGA_v2.0_scaffold204G41638 Striga asiatica HOM05D006416 ORTHO05D008054 5.7e-105 384.8 287 70.7
CAN.G1134.18 Capsicum annuum HOM05D006416 ORTHO05D008054 7.5e-105 384.4 293 70.3
Nitab4.5_0007238g0010 Nicotiana tabacum HOM05D006416 ORTHO05D008054 7.5e-105 384.4 298 69.1
Lsat_1_v5_gn_8_116020 Lactuca sativa HOM05D006416 ORTHO05D008054 1.7e-104 383.3 295 68.8
Cc02_g32670 Coffea canephora HOM05D006416 ORTHO05D008054 2.2e-104 382.9 294 69.4
Oeu043843.1 Olea europaea HOM05D006416 ORTHO05D008054 2.2e-104 382.9 288 70.8
Sc16g0008340 Simmondsia chinensis HOM05D006416 ORTHO05D008054 2.2e-104 382.9 289 72.7
ECA232G3707 Erigeron canadensis HOM05D006416 ORTHO05D008054 2.8e-104 382.5 235 80.9
Nn4g26146 Nelumbo nucifera HOM05D006416 ORTHO05D008054 3.7e-104 382.1 236 82.2
CsaV3_2G004910 Cucumis sativus L. HOM05D006416 ORTHO05D008054 6.3e-104 381.3 313 66.8
Peaxi162Scf00434g00329 Petunia axillaris HOM05D006416 ORTHO05D008054 1.1e-103 380.6 290 68.6
Lj5g0006935 Lotus japonicus HOM05D006416 ORTHO05D008054 1.4e-103 380.2 240 80.0
Nn1g02093 Nelumbo nucifera HOM05D006416 ORTHO05D008054 1.4e-103 380.2 278 74.5
HanXRQChr09g0258731 Helianthus annuus HOM05D006416 ORTHO05D008054 1.8e-103 379.8 291 69.4
HanXRQChr15g0486581 Helianthus annuus HOM05D006416 ORTHO05D008054 4.1e-103 378.6 287 69.7
MBI19_g27532_MAGBIO Magnolia biondii HOM05D006416 ORTHO05D008054 4.1e-103 378.6 293 69.3
Dinv22903 Davidia involucrata HOM05D006416 ORTHO05D008054 7.0e-103 377.9 229 83.4
Sopen01g042190 Solanum pennellii HOM05D006416 ORTHO05D008054 9.1e-103 377.5 291 68.7
Nitab4.5_0004940g0060 Nicotiana tabacum HOM05D006416 ORTHO05D008054 1.2e-102 377.1 303 67.0
PGSC0003DMG402028574 Solanum tuberosum HOM05D006416 ORTHO05D008054 1.6e-102 376.7 291 68.7
Oeu032896.2 Olea europaea HOM05D006416 ORTHO05D008054 2.0e-102 376.3 298 68.1
Solyc01g098640.3 Solanum lycopersicum HOM05D006416 ORTHO05D008054 2.7e-102 375.9 291 68.4
Migut.H00517 Erythranthe guttata HOM05D006416 ORTHO05D008054 1.7e-101 373.2 300 67.7
Aqoxy2G03216 Aquilegia oxysepala HOM05D006416 ORTHO05D008054 2.3e-101 372.9 294 67.3
MSTRG.2929 Avicennia marina HOM05D006416 ORTHO05D008054 2.3e-101 372.9 287 68.3
TAR362G1050 Trochodendron aralioides HOM05D006416 ORTHO05D008054 2.9e-101 372.5 298 67.1
PSO170G0754 Papaver somniferum HOM05D006416 ORTHO05D008054 1.9e-100 369.8 287 68.3
CDE08G0960 Ceratophyllum demersum HOM05D006416 ORTHO05D008054 5.6e-100 368.2 294 68.4
PSO407G0317 Papaver somniferum HOM05D006416 ORTHO05D008054 5.6e-100 368.2 290 67.6
ATR0626G312 Amborella trichopoda HOM05D006416 ORTHO05D008054 9.5e-100 367.5 299 67.6
CDE02G0677 Ceratophyllum demersum HOM05D006416 ORTHO05D008054 1.2e-99 367.1 245 76.7
SalBow1G1453 Salvia bowleyana HOM05D006416 ORTHO05D008054 3.6e-99 365.5 241 78.4
unitig_899.g15132 Utricularia gibba HOM05D000909 ORTHO05D000928 6.1e-99 364.8 237 76.4
Os05g0401100 Oryza sativa ssp. japonica HOM05D006416 ORTHO05D008054 3.4e-97 359.0 232 78.9
HPP92_006953 Vanilla planifolia HOM05D006416 ORTHO05D008054 6.4e-96 354.8 244 73.8
Zm00001eb346800 Zea mays HOM05D006416 ORTHO05D008054 8.3e-96 354.4 232 79.7
CSS0022908 Camellia sinensis var. sinensis HOM05D006416 ORTHO05D008054 1.3e-93 347.1 293 65.2
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.1e-92 344.0 229 76.4
Pp3c7_6980 Physcomitrium patens HOM05D006416 ORTHO05D008054 1.0e-90 337.4 224 76.3
Migut.C00218 Erythranthe guttata HOM05D006416 ORTHO05D008054 6.8e-90 334.7 205 81.0
Pp3c11_19220 Physcomitrium patens HOM05D006416 ORTHO05D008054 8.9e-90 334.3 224 76.3
SEGI_37406 Sequoiadendron giganteum HOM05D006416 ORTHO05D008054 1.1e-87 327.4 232 72.0
SMO329G0005 Selaginella moellendorffii HOM05D006416 ORTHO05D008054 1.6e-83 313.5 237 65.8
Mapoly0079s0006 Marchantia polymorpha HOM05D006416 ORTHO05D008054 9.8e-81 304.3 246 65.4
Hma1.2p1_0666F.1_g199430 Hydrangea macrophylla HOM05D006416 ORTHO05D008054 7.3e-76 288.1 191 73.8
CBR_g30711 Chara braunii HOM05D006416 ORTHO05D008054 9.9e-73 277.7 234 62.0
SMO353G0282 Selaginella moellendorffii HOM05D006416 ORTHO05D008054 4.9e-72 275.4 203 65.0
Aa31LG1G5580 Aethionema arabicum HOM05D006416 ORTHO05D008054 1.2e-65 254.2 137 92.7
Lalb_Chr02g0148391 Lupinus albus HOM05D006416 ORTHO05D008054 9.3e-63 244.6 162 77.8
Hma1.2p1_0666F.1_g199440 Hydrangea macrophylla HOM05D006416 ORTHO05D008054 1.1e-50 204.5 136 72.8
Cre03.g182150 Chlamydomonas reinhardtii HOM05D006416 ORTHO05D008054 2.9e-48 196.4 223 44.4
MCO01G659 Micromonas commoda HOM05D006416 ORTHO05D008054 1.9e-47 193.7 205 48.8
PRCOL_00003436 Prasinoderma coloniale HOM05D006416 ORTHO05D008054 1.4e-39 167.5 220 42.3
Dinv23978 Davidia involucrata HOM05D006416 ORTHO05D008054 5.7e-36 155.6 89 88.8
Lalb_Chr02g0148401 Lupinus albus HOM05D006416 ORTHO05D008054 1.4e-34 151.0 83 91.6
arahy.Tifrunner.gnm1.ann1.SGB0EA Arachis hypogaea HOM05D006416 ORTHO05D008054 1.8e-34 150.6 87 83.9
Haze_01725 Corylus avellana HOM05D006416 ORTHO05D008054 6.9e-26 122.1 64 87.5


User provided reference genes

Program Settings