Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 3.6e-180 634.8 318 100.0
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 6.1e-156 554.3 319 87.8
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 1.2e-154 550.1 319 88.4
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 5.9e-151 537.7 319 85.6
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 1.0e-150 537.0 320 85.6
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 1.1e-149 533.5 320 85.3
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 1.4e-147 526.6 323 84.2
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 1.4e-147 526.6 323 84.2
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 5.7e-146 521.2 325 83.1
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 8.3e-145 517.3 321 83.2
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 1.8e-144 516.2 325 81.8
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 1.6e-143 513.1 326 81.3
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 2.9e-142 508.8 322 79.8
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 8.9e-131 470.7 325 73.2
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 9.8e-130 467.2 323 73.1
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 1.1e-123 447.2 331 70.1
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 3.1e-123 445.7 331 69.8
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 8.9e-123 444.1 331 69.5
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 2.0e-122 443.0 320 70.9
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 2.6e-122 442.6 320 70.6
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 9.9e-122 440.7 323 72.1
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 1.3e-121 440.3 331 68.9
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 2.9e-121 439.1 318 69.2
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 8.3e-121 437.6 321 70.1
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 2.4e-120 436.0 328 68.3
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 4.1e-120 435.3 322 67.7
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 4.1e-120 435.3 320 70.0
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 9.2e-120 434.1 323 66.9
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 9.2e-120 434.1 331 68.9
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 1.2e-119 433.7 323 68.7
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 1.3e-118 430.3 322 69.6
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 8.6e-118 427.6 322 67.1
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 2.5e-117 426.0 322 66.5
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 4.3e-117 425.2 325 66.2
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 1.2e-116 423.7 321 68.8
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 2.1e-116 422.9 322 66.8
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 2.1e-116 422.9 324 66.7
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 3.6e-116 422.2 324 65.7
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 4.7e-116 421.8 322 67.7
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 6.2e-116 421.4 326 67.2
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 1.4e-115 420.2 321 66.0
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 1.8e-115 419.9 328 65.5
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 1.8e-115 419.9 320 66.9
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 2.4e-115 419.5 320 66.6
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 3.1e-115 419.1 331 66.8
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 3.1e-115 419.1 325 66.5
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 5.2e-115 418.3 319 68.3
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 6.8e-115 417.9 322 65.8
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 8.9e-115 417.5 322 64.6
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 1.2e-114 417.2 329 65.3
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 2.0e-114 416.4 326 65.6
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 2.6e-114 416.0 321 65.7
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 3.4e-114 415.6 320 66.2
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 4.4e-114 415.2 328 64.3
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 4.4e-114 415.2 332 64.8
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 5.8e-114 414.8 325 65.2
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 5.8e-114 414.8 319 64.9
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 7.6e-114 414.5 325 64.9
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 1.3e-113 413.7 322 63.4
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 1.7e-113 413.3 326 65.3
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 2.2e-113 412.9 347 63.7
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 2.9e-113 412.5 322 64.3
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 2.9e-113 412.5 317 65.6
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 2.9e-113 412.5 322 65.2
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 3.8e-113 412.1 323 65.6
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 6.4e-113 411.4 322 64.6
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 8.4e-113 411.0 325 64.6
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 1.1e-112 410.6 327 64.5
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 1.4e-112 410.2 263 74.9
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 1.4e-112 410.2 325 64.9
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 3.2e-112 409.1 322 66.1
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 5.4e-112 408.3 327 64.2
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 1.6e-111 406.8 322 62.4
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 1.6e-111 406.8 318 65.4
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 2.1e-111 406.4 322 63.7
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 3.5e-111 405.6 321 64.8
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 3.5e-111 405.6 318 65.1
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 4.6e-111 405.2 322 65.5
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 6.0e-111 404.8 321 63.2
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 7.8e-111 404.4 322 65.2
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 2.3e-110 402.9 322 65.2
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 3.0e-110 402.5 322 65.2
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 3.0e-110 402.5 320 65.3
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 3.0e-110 402.5 329 65.7
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 3.9e-110 402.1 328 61.3
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 3.9e-110 402.1 317 65.0
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 1.9e-109 399.8 326 63.2
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 2.5e-109 399.4 322 63.0
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 5.6e-109 398.3 347 62.8
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 4.7e-108 395.2 322 62.7
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.4e-107 393.7 329 61.7
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 2.4e-107 392.9 316 64.2
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 6.9e-107 391.3 331 61.3
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 6.9e-107 391.3 362 59.1
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 2.6e-106 389.4 316 63.6
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 3.4e-106 389.0 324 60.8
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 3.2e-104 382.5 317 62.1
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 1.7e-102 376.7 317 61.2
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 2.8e-100 369.4 326 59.5
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 1.5e-98 363.6 498 44.6
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 7.6e-98 361.3 265 68.3
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 2.2e-97 359.8 389 52.2
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 4.2e-96 355.5 323 58.5
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 4.2e-96 355.5 263 66.2
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 1.2e-95 354.0 317 61.2
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 2.5e-93 346.3 264 64.4
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 2.8e-92 342.8 284 62.0
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 2.9e-89 332.8 200 81.0
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 3.0e-78 296.2 189 79.4
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 2.2e-76 290.0 264 54.2
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 3.7e-76 289.3 199 72.4
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 1.8e-75 287.0 183 77.6
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 6.9e-75 285.0 284 51.4
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 1.9e-72 276.9 175 77.7
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 1.2e-71 274.2 176 77.3
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 1.5e-69 267.3 168 78.6
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 1.7e-68 263.8 167 77.2
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 1.2e-50 204.5 121 85.1
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 2.6e-50 203.4 184 56.5
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 8.8e-46 188.3 124 75.0
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 2.8e-44 183.3 184 53.3
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 6.3e-44 182.2 162 53.1
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.7e-41 174.1 118 73.7
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 4.2e-40 169.5 118 71.2
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.4e-35 154.5 112 67.9
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 2.7e-34 150.2 151 54.3
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 4.7e-31 139.4 118 64.4
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.7e-28 131.0 95 70.5
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 9.5e-16 88.6 73 61.6
Zm00001eb219900 Zea mays HOM05D005825 ORTHO05D006483 4.1e-11 73.2 160 31.9
MCO17G084 Micromonas commoda HOM05D051517 ORTHO05D006483 9.2e-11 72.0 174 29.3
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 2.7e-10 70.5 140 36.4
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 2.7e-10 70.5 49 67.3
Cre02.g103000 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 3.9e-09 66.6 143 32.2
Cre09.g386756 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 7.3e-08 62.4 175 28.6
Pp3c12_8840 Physcomitrium patens HOM05D005825 ORTHO05D006483 3.6e-07 60.1 198 26.3
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 4.7e-07 59.7 148 30.4
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 4.7e-07 59.7 52 61.5
MCO17G075 Micromonas commoda HOM05D051517 ORTHO05D006483 1.4e-06 58.2 178 29.2


User provided reference genes

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