Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 0.0e+00 1082.0 535 100.0
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 2.1e-310 1068.1 535 98.1
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 3.1e-309 1064.3 535 97.8
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 1.5e-308 1062.0 535 97.6
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 2.6e-308 1061.2 535 97.8
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 3.2e-306 1054.3 535 96.6
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 2.6e-300 1034.6 536 94.8
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 2.7e-297 1024.6 535 94.0
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 3.5e-297 1024.2 535 93.8
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 1.7e-296 1021.9 536 94.0
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 4.4e-292 1007.3 535 92.1
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 7.6e-284 979.9 535 88.4
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 7.9e-281 969.9 533 87.8
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 1.7e-267 925.6 535 83.6
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 8.4e-267 923.3 535 82.4
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 3.2e-266 921.4 536 83.6
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 2.7e-265 918.3 535 81.9
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 2.7e-265 918.3 535 83.4
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 3.5e-265 917.9 535 82.8
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 1.8e-264 915.6 535 82.2
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 3.0e-264 914.8 535 81.5
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 5.1e-264 914.1 534 82.2
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 1.5e-263 912.5 535 82.2
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 2.5e-263 911.8 535 82.2
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 2.5e-263 911.8 540 81.5
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 5.7e-263 910.6 535 83.2
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 1.3e-262 909.4 535 81.5
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 1.3e-262 909.4 535 81.9
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 1.6e-262 909.1 535 81.9
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 2.8e-262 908.3 535 81.3
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 3.7e-262 907.9 535 83.0
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 3.7e-262 907.9 535 81.5
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 4.8e-262 907.5 535 81.7
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 6.3e-262 907.1 535 82.1
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 6.3e-262 907.1 535 82.1
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 1.4e-261 906.0 535 81.7
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 3.1e-261 904.8 535 82.8
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 3.1e-261 904.8 542 82.3
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 3.1e-261 904.8 536 81.5
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 4.1e-261 904.4 535 81.5
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 6.9e-261 903.7 535 81.3
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 6.9e-261 903.7 536 81.3
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 1.5e-260 902.5 536 81.9
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 1.5e-260 902.5 535 81.3
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 2.0e-260 902.1 529 81.9
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 2.0e-260 902.1 535 80.7
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 3.4e-260 901.4 535 80.9
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 3.4e-260 901.4 535 81.9
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 5.9e-260 900.6 535 81.7
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 7.6e-260 900.2 535 82.1
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 7.6e-260 900.2 535 81.7
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 1.0e-259 899.8 535 80.6
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 1.3e-259 899.4 535 80.7
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 2.2e-259 898.7 537 81.4
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 3.8e-259 897.9 529 81.9
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 1.1e-258 896.3 535 80.6
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 1.1e-258 896.3 535 80.6
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 1.9e-258 895.6 535 82.1
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 2.5e-258 895.2 535 80.7
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 3.2e-258 894.8 535 80.2
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 3.2e-258 894.8 536 80.6
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 3.2e-258 894.8 535 80.2
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 4.2e-258 894.4 535 80.2
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 5.5e-258 894.0 537 80.4
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 5.5e-258 894.0 536 81.0
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 7.2e-258 893.6 536 81.2
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 7.2e-258 893.6 535 80.7
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 1.2e-257 892.9 535 80.6
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 2.1e-257 892.1 535 79.4
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 2.7e-257 891.7 535 80.4
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 3.6e-257 891.3 535 80.9
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 4.6e-257 891.0 530 80.0
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 6.1e-257 890.6 535 79.4
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 7.9e-257 890.2 535 80.7
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.3e-256 889.4 535 80.2
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 1.3e-256 889.4 534 79.8
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 2.3e-256 888.6 535 79.6
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 3.9e-256 887.9 529 80.2
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 3.9e-256 887.9 534 80.9
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 3.9e-256 887.9 533 79.5
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 6.7e-256 887.1 535 80.4
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 8.7e-256 886.7 533 79.7
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 1.1e-255 886.3 535 80.0
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 1.1e-255 886.3 536 80.8
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 9.7e-255 883.2 537 79.9
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 1.1e-253 879.8 535 78.1
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 1.4e-253 879.4 536 79.5
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 2.4e-253 878.6 536 79.7
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 5.3e-253 877.5 536 80.0
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 1.5e-252 875.9 531 79.5
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 2.6e-252 875.2 536 79.5
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 2.6e-252 875.2 535 80.2
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 1.3e-251 872.8 535 77.6
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 6.5e-251 870.5 525 79.2
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.4e-250 869.4 530 79.6
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 3.6e-249 864.8 537 76.9
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 4.6e-249 864.4 535 77.6
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 1.0e-248 863.2 556 76.4
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 6.7e-248 860.5 556 76.3
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 1.1e-247 859.8 536 77.1
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 2.0e-247 859.0 529 76.4
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 2.2e-246 855.5 535 76.1
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 4.1e-245 851.3 526 77.4
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 9.1e-245 850.1 526 78.1
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 1.5e-244 849.4 526 76.8
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 1.4e-240 836.3 535 75.3
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 1.3e-238 829.7 682 63.3
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 1.1e-237 826.6 535 76.1
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 1.2e-236 823.2 494 81.2
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 8.5e-235 817.0 496 79.6
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 8.8e-232 807.0 493 79.9
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 2.4e-229 798.9 666 63.1
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 2.9e-227 792.0 539 71.4
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 1.5e-226 789.6 559 68.9
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 1.0e-224 783.5 527 70.0
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 5.2e-224 781.2 527 69.8
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 3.5e-220 768.5 528 69.1
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 8.8e-216 753.8 526 67.9
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 1.2e-212 743.4 421 88.1
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 1.6e-212 743.0 535 65.8
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 1.0e-211 740.3 536 71.1
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 1.9e-210 736.1 528 65.0
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 2.3e-203 712.6 441 80.0
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 2.1e-201 706.1 526 64.1
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 9.8e-199 697.2 403 80.9
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 8.3e-198 694.1 525 63.2
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 5.4e-189 664.8 497 65.2
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 3.0e-179 632.5 497 65.2
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 1.5e-167 593.6 422 70.1
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 2.3e-155 553.1 710 48.2
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 3.7e-137 492.7 537 51.4
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 7.4e-130 468.4 299 75.3
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 1.6e-124 450.7 312 70.5
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 2.2e-118 430.3 537 46.7
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 6.1e-100 369.0 262 69.1
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 6.8e-99 365.5 411 49.4
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 1.4e-72 278.1 184 73.4
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 6.0e-71 272.7 148 86.5
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 2.1e-60 237.7 148 76.4
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 2.2e-41 174.5 140 60.0
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 1.6e-39 168.3 219 44.3
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 7.4e-37 159.5 95 80.0
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 3.4e-34 150.6 104 72.1
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 7.6e-34 149.4 103 73.8
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 1.6e-31 141.7 93 74.2
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 6.9e-19 99.8 93 62.4
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 1.4e-16 92.0 46 89.1
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 5.7e-13 80.1 102 46.1
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 6.3e-12 76.6 45 80.0
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 2.4e-11 74.7 44 79.5
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 2.4e-11 74.7 44 79.5
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 4.1e-11 73.9 50 70.0
A09p35740 Brassica napus HOM05D004282 ORTHO05D017169 4.5e-10 70.5 41 82.9
A09p59280 Brassica napus HOM05D004282 ORTHO05D017169 4.5e-10 70.5 41 82.9
BraA09t41310Z Brassica rapa HOM05D004282 ORTHO05D017169 4.5e-10 70.5 41 82.9
A03p47680 Brassica napus HOM05D004282 ORTHO05D017169 4.2e-08 63.9 38 81.6
BraA09t37854Z Brassica rapa HOM05D004282 ORTHO05D017169 4.2e-08 63.9 38 81.6
RcHm_v2.0_Chr1g0321151 Rosa chinensis HOM05D004282 ORTHO05D022242 1.2e-07 62.4 48 68.8
SGA_v2.0_scaffold43G16453 Striga asiatica HOM05D004282 ORTHO05D404191 6.1e-07 60.1 41 65.9
PRCOL_00000049 Prasinoderma coloniale HOM05D003983 ORTHO05D004562 3.9e-06 57.4 203 27.6


User provided reference genes

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