Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10023126m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 7.1e-119 430.6 220 100.0
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 2.6e-105 385.6 234 86.8
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 1.6e-99 366.3 232 82.3
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 6.0e-94 347.8 229 80.3
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 6.0e-94 347.8 229 79.9
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 6.0e-94 347.8 229 80.3
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 7.9e-94 347.4 229 79.9
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 6.6e-93 344.4 229 79.0
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 7.4e-92 340.9 232 77.2
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 9.6e-92 340.5 229 77.7
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 2.8e-91 339.0 232 76.3
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 6.2e-91 337.8 233 76.4
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 1.1e-87 327.0 230 73.5
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 2.6e-60 236.1 220 61.8
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 9.7e-60 234.2 232 56.5
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 7.0e-42 174.9 227 44.9
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 3.8e-40 169.1 228 40.8
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 6.5e-40 168.3 230 44.3
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 1.9e-39 166.8 228 41.7
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 5.5e-39 165.2 228 42.1
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 1.6e-38 163.7 227 42.3
THA.LOC104819718 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 1.6e-38 163.7 225 48.9
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.1e-38 163.3 227 41.9
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 2.1e-38 163.3 226 42.9
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 3.6e-38 162.5 229 43.2
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 6.1e-38 161.8 229 41.9
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 1.0e-37 161.0 229 40.2
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 1.8e-37 160.2 231 42.9
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 1.8e-37 160.2 228 40.8
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 3.0e-37 159.5 221 39.8
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 8.8e-37 157.9 220 40.9
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 1.5e-36 157.1 227 39.6
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 2.6e-36 156.4 228 38.2
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 3.4e-36 156.0 227 41.4
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 3.4e-36 156.0 227 41.4
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 7.5e-36 154.8 221 41.6
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 9.8e-36 154.5 228 39.5
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.3e-35 154.1 221 42.1
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 1.7e-35 153.7 227 41.0
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 2.2e-35 153.3 227 41.4
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 2.8e-35 152.9 229 41.9
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 3.7e-35 152.5 227 39.6
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 6.3e-35 151.8 228 40.8
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 8.3e-35 151.4 229 44.1
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 8.3e-35 151.4 229 44.1
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 8.3e-35 151.4 226 37.6
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 1.1e-34 151.0 224 39.3
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 1.1e-34 151.0 227 44.5
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.4e-34 150.6 221 41.2
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 1.4e-34 150.6 226 38.9
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 1.4e-34 150.6 226 37.6
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 1.8e-34 150.2 223 38.1
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 2.4e-34 149.8 227 39.2
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 3.1e-34 149.4 225 37.8
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 3.1e-34 149.4 228 42.5
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 7.0e-34 148.3 227 39.2
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 9.1e-34 147.9 226 38.1
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 1.6e-33 147.1 228 39.9
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 2.0e-33 146.7 229 42.8
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 2.7e-33 146.4 230 37.4
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 2.7e-33 146.4 223 37.2
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 2.7e-33 146.4 227 37.0
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 3.5e-33 146.0 231 36.4
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 4.5e-33 145.6 226 38.1
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 5.9e-33 145.2 225 40.0
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 5.9e-33 145.2 223 41.7
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 7.7e-33 144.8 228 41.2
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.7e-32 143.7 223 36.8
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 3.8e-32 142.5 213 38.5
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 3.8e-32 142.5 226 39.8
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 5.0e-32 142.1 227 39.6
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 5.0e-32 142.1 228 40.8
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 5.0e-32 142.1 225 34.7
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.1e-31 141.0 223 36.3
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 1.9e-31 140.2 235 40.0
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 2.5e-31 139.8 229 37.1
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 2.5e-31 139.8 226 39.8
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 4.2e-31 139.0 225 38.2
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 4.2e-31 139.0 225 38.2
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 4.2e-31 139.0 232 38.8
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 7.2e-31 138.3 228 35.5
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 9.5e-31 137.9 228 38.6
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.6e-30 137.1 228 34.6
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 2.8e-30 136.3 226 37.2
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 3.6e-30 136.0 229 34.5
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 1.0e-29 134.4 226 38.1
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.0e-29 134.4 228 36.0
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 1.4e-29 134.0 214 36.4
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 3.0e-29 132.9 228 39.5
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 3.0e-29 132.9 227 33.0
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 4.0e-29 132.5 216 34.7
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 5.2e-29 132.1 236 36.4
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 8.8e-29 131.3 222 35.6
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 4.4e-28 129.0 228 37.7
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 1.3e-27 127.5 225 36.0
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 2.2e-27 126.7 228 38.6
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 2.8e-27 126.3 224 36.2
FAN28G2205 Fragaria x ananassa HOM05D005001 ORTHO05D005796 6.3e-27 125.2 181 39.8
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 8.3e-27 124.8 213 36.6
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 2.4e-26 123.2 222 35.1
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 2.4e-26 123.2 225 35.1
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 4.1e-26 122.5 228 35.1
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 1.2e-25 120.9 224 33.5
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 1.6e-25 120.6 227 33.9
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 2.7e-25 119.8 232 36.2
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 3.5e-25 119.4 227 36.6
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.0e-24 117.9 219 31.5
Lalb_Chr16g0380041 Lupinus albus HOM05D005001 ORTHO05D005796 1.3e-24 117.5 215 37.7
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 2.9e-24 116.3 226 30.1
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 1.1e-23 114.4 226 29.6
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 1.5e-23 114.0 225 32.0
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 1.9e-23 113.6 227 36.1
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 3.3e-23 112.8 224 36.2
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 9.5e-23 111.3 227 35.7
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 1.6e-22 110.5 225 29.3
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 1.6e-22 110.5 227 32.6
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 6.1e-22 108.6 232 30.6
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.1e-18 97.8 227 29.5
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.8e-18 97.1 227 29.5
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 3.5e-17 92.8 230 29.6
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 1.0e-16 91.3 217 30.4
unitig_37.g12434 Utricularia gibba HOM05D005001 ORTHO05D005796 4.3e-15 85.9 223 23.8
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 1.6e-14 84.0 102 42.2
Lj4P237T25 Lonicera japonica HOM05D005001 ORTHO05D005796 3.1e-13 79.7 204 32.4
Medtr5g025380 Medicago truncatula HOM05D005001 ORTHO05D005796 3.7e-11 72.8 105 45.7
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 1.2e-06 57.8 218 26.1
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 2.1e-06 57.0 226 27.4


User provided reference genes

Program Settings