Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10023093m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 2.3e-167 592.4 367 100.0
Thhalv10013587m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 2.2e-104 383.3 450 60.0
AT4G08580 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 4.5e-102 375.6 449 64.1
AL6G29010 Arabidopsis lyrata HOM05D003466 ORTHO05D004102 1.3e-101 374.0 449 64.1
Aa31LG11G11660 Aethionema arabicum HOM05D003466 ORTHO05D004102 5.0e-101 372.1 449 61.2
CARHR195220 Cardamine hirsuta HOM05D003466 ORTHO05D004102 1.1e-100 370.9 449 60.8
AT5G17900 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 1.4e-100 370.5 449 63.7
Carub.0006s1611 Capsella rubella HOM05D003466 ORTHO05D004102 1.8e-98 363.6 449 62.8
Sp6g26370 Schrenkiella parvula HOM05D003466 ORTHO05D004102 1.1e-97 360.9 449 63.5
BcaB08g36728 Brassica carinata HOM05D003466 ORTHO05D004102 1.5e-94 350.5 447 57.0
A03p08540 Brassica napus HOM05D003466 ORTHO05D004102 4.5e-94 349.0 446 57.2
BcaB01g04922 Brassica carinata HOM05D003466 ORTHO05D004102 1.0e-93 347.8 450 58.2
BraA03t10180Z Brassica rapa HOM05D003466 ORTHO05D004102 2.2e-93 346.7 447 57.3
C09p59160 Brassica napus HOM05D003466 ORTHO05D004102 1.0e-90 337.8 450 56.0
BolC9t58759H Brassica oleracea HOM05D003466 ORTHO05D004102 1.0e-90 337.8 450 56.0
THA.LOC104820792 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 3.9e-90 335.9 449 56.3
BraA10t44221Z Brassica rapa HOM05D003466 ORTHO05D004102 2.6e-89 333.2 449 55.5
THA.LOC104802883 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 3.3e-89 332.8 449 56.8
BcaC04g18745 Brassica carinata HOM05D003466 ORTHO05D004102 4.4e-89 332.4 443 55.5
A10p21590 Brassica napus HOM05D003466 ORTHO05D004102 6.3e-88 328.6 450 55.3
C03p09970 Brassica napus HOM05D003466 ORTHO05D004102 2.0e-86 323.6 447 56.2
MELO3C008863.2 Cucumis melo HOM05D003466 ORTHO05D004102 7.7e-86 321.6 448 49.1
ClCG04G004740 Citrullus lanatus HOM05D003466 ORTHO05D004102 2.2e-85 320.1 448 48.2
CsaV3_4G031590 Cucumis sativus L. HOM05D003466 ORTHO05D004102 5.0e-85 318.9 448 50.9
Sp3g32640 Schrenkiella parvula HOM05D003466 ORTHO05D004102 5.0e-85 318.9 442 51.4
Hma1.2p1_0106F.1_g051170 Hydrangea macrophylla HOM05D003466 ORTHO05D004102 1.6e-83 313.9 448 52.9
Atru.chr7.542 Acer truncatum HOM05D003466 ORTHO05D004102 6.1e-83 312.0 448 55.1
Os02g0280100 Oryza sativa ssp. japonica HOM05D003466 ORTHO05D004102 3.0e-82 309.7 448 51.3
Sed0007742 Sechium edule HOM05D003466 ORTHO05D004102 3.0e-82 309.7 448 50.4
TWI34G0391 Tripterygium wilfordii HOM05D003466 ORTHO05D004102 4.0e-82 309.3 448 51.3
MD01G1001200 Malus domestica HOM05D003466 ORTHO05D004102 1.2e-81 307.8 444 51.8
FAN13G2307 Fragaria x ananassa HOM05D003466 ORTHO05D004102 1.5e-81 307.4 448 50.4
unitig_8.g3898 Utricularia gibba HOM05D003466 ORTHO05D004102 2.0e-81 307.0 445 52.6
Peaxi162Scf00071g00424 Petunia axillaris HOM05D003466 ORTHO05D004102 2.6e-81 306.6 445 54.2
BraA07t29363Z Brassica rapa HOM05D003466 ORTHO05D004102 3.3e-81 306.2 446 50.4
Sed0012489 Sechium edule HOM05D003466 ORTHO05D004102 9.7e-81 304.7 448 47.3
SGA_v2.0_scaffold44G16596 Striga asiatica HOM05D003466 ORTHO05D004102 3.7e-80 302.8 447 53.2
Lsat_1_v5_gn_1_55421 Lactuca sativa HOM05D003466 ORTHO05D004102 4.8e-80 302.4 445 54.6
Potri.019G039900 Populus trichocarpa HOM05D003466 ORTHO05D004102 1.4e-79 300.8 448 52.5
BcaB01g05163 Brassica carinata HOM05D003466 ORTHO05D004102 1.2e-78 297.7 450 58.2
BolC3t13485H Brassica oleracea HOM05D003466 ORTHO05D004102 1.2e-78 297.7 450 58.2
MSTRG.8394 Avicennia marina HOM05D003466 ORTHO05D004102 3.5e-78 296.2 450 51.8
Eucgr.E01598 Eucalyptus grandis HOM05D003466 ORTHO05D004102 7.7e-78 295.0 448 51.8
A07p16360 Brassica napus HOM05D003466 ORTHO05D004102 1.0e-77 294.7 446 50.0
Manes.09G136800 Manihot esculenta HOM05D003466 ORTHO05D004102 1.7e-77 293.9 448 52.9
Cpa.g.sc2.346 Carica papaya HOM05D003466 ORTHO05D004102 1.5e-76 290.8 448 54.2
Lalb_Chr12g0205661 Lupinus albus HOM05D003466 ORTHO05D004102 1.5e-76 290.8 450 43.1
Sabra19G0050200 Salix brachista HOM05D003466 ORTHO05D004102 1.5e-76 290.8 448 46.9
DCAR_004345 Daucus carota HOM05D003466 ORTHO05D004102 2.5e-76 290.0 448 49.8
Nn1g00582 Nelumbo nucifera HOM05D003466 ORTHO05D004102 4.2e-76 289.3 448 50.9
Gohir.A11G229400 Gossypium hirsutum HOM05D003466 ORTHO05D004102 7.2e-76 288.5 448 52.2
Gohir.D11G241400 Gossypium hirsutum HOM05D003466 ORTHO05D004102 7.2e-76 288.5 448 52.2
Gorai.007G255500 Gossypium raimondii HOM05D003466 ORTHO05D004102 7.2e-76 288.5 448 52.2
Zm00001eb196610 Zea mays HOM05D003466 ORTHO05D004102 7.2e-76 288.5 447 50.8
MSTRG.150 Avicennia marina HOM05D003466 ORTHO05D004102 1.2e-75 287.7 448 50.9
Dinv05554 Davidia involucrata HOM05D003466 ORTHO05D004102 1.2e-75 287.7 448 51.3
RcHm_v2.0_Chr2g0119581 Rosa chinensis HOM05D003466 ORTHO05D004102 2.1e-75 287.0 448 48.9
PGR142G0405 Punica granatum HOM05D003466 ORTHO05D004102 2.7e-75 286.6 448 45.3
Duzib106G0204 Durio zibethinus HOM05D003466 ORTHO05D004102 4.7e-75 285.8 448 53.1
Dinv25045 Davidia involucrata HOM05D003466 ORTHO05D004102 6.1e-75 285.4 448 50.9
Potri.013G065600 Populus trichocarpa HOM05D003466 ORTHO05D004102 8.0e-75 285.0 449 51.9
Thecc.05G242600 Theobroma cacao HOM05D003466 ORTHO05D004102 8.0e-75 285.0 450 54.0
Duzib128G1823 Durio zibethinus HOM05D003466 ORTHO05D004102 1.0e-74 284.6 448 53.1
FvH4_5g26300 Fragaria vesca HOM05D003466 ORTHO05D004102 1.0e-74 284.6 447 51.7
Nn1g06321 Nelumbo nucifera HOM05D003466 ORTHO05D004102 1.0e-74 284.6 443 51.5
Actinidia38929 Actinidia chinensis HOM05D003466 ORTHO05D004102 1.8e-74 283.9 448 51.3
LjContig00357g0023779 Lotus japonicus HOM05D003466 ORTHO05D004102 2.3e-74 283.5 454 45.6
MD15G1341800 Malus domestica HOM05D003466 ORTHO05D004102 2.3e-74 283.5 444 52.0
TAR623G0841 Trochodendron aralioides HOM05D003466 ORTHO05D004102 2.3e-74 283.5 448 51.3
unitig_22.g5474 Utricularia gibba HOM05D003466 ORTHO05D004102 3.0e-74 283.1 450 50.4
Eucgr.J03113 Eucalyptus grandis HOM05D003466 ORTHO05D004102 4.0e-74 282.7 448 50.9
Psat7g075240 Pisum sativum HOM05D003466 ORTHO05D004102 4.0e-74 282.7 450 45.8
Peaxi162Scf00673g00432 Petunia axillaris HOM05D003466 ORTHO05D004102 8.8e-74 281.6 449 47.9
Rhsim09G0189500 Rhododendron simsii HOM05D003466 ORTHO05D004102 8.8e-74 281.6 448 50.2
vmacro10385 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 8.8e-74 281.6 448 50.4
Ciclev10020229m.g Citrus clementina HOM05D003466 ORTHO05D004102 2.0e-73 280.4 448 50.4
HanXRQChr01g0026931 Helianthus annuus HOM05D003466 ORTHO05D004102 5.7e-73 278.9 445 52.6
CSS0012966 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 7.5e-73 278.5 448 48.4
CSS0029529 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 7.5e-73 278.5 448 48.4
TPR.G11896 Trifolium pratense HOM05D003466 ORTHO05D004102 7.5e-73 278.5 450 44.9
Glyma.05G151500 Glycine max HOM05D003466 ORTHO05D004102 1.3e-72 277.7 451 45.2
ECA248G3292 Erigeron canadensis HOM05D003466 ORTHO05D004102 1.7e-72 277.3 451 52.5
Lj4g0028177 Lotus japonicus HOM05D003466 ORTHO05D004102 2.2e-72 276.9 432 51.2
QL06p022006 Quercus lobata HOM05D003466 ORTHO05D004102 2.2e-72 276.9 448 50.2
CANSAT25G0815 Cannabis sativa HOM05D003466 ORTHO05D004102 2.8e-72 276.6 448 47.8
CANSAT80G2535 Cannabis sativa HOM05D003466 ORTHO05D004102 2.8e-72 276.6 448 47.8
C07p24050 Brassica napus HOM05D003466 ORTHO05D004102 3.7e-72 276.2 444 48.4
BolC7t42929H Brassica oleracea HOM05D003466 ORTHO05D004102 4.8e-72 275.8 444 48.2
Glyma.08G108300 Glycine max HOM05D003466 ORTHO05D004102 4.8e-72 275.8 452 44.7
SalBow7G4471 Salvia bowleyana HOM05D003466 ORTHO05D004102 6.3e-72 275.4 448 50.9
MBI14_g30653_MAGBIO Magnolia biondii HOM05D003466 ORTHO05D004102 8.3e-72 275.0 448 50.0
Nitab4.5_0005883g0020 Nicotiana tabacum HOM05D003466 ORTHO05D004102 2.4e-71 273.5 445 46.7
RcHm_v2.0_Chr7g0222731 Rosa chinensis HOM05D003466 ORTHO05D004102 2.4e-71 273.5 448 47.8
Haze_21188 Corylus avellana HOM05D003466 ORTHO05D004102 3.1e-71 273.1 448 45.8
Hund15775 Selenicereus undatus HOM05D003466 ORTHO05D004102 5.4e-71 272.3 449 54.3
Phvul.003G051500 Phaseolus vulgaris HOM05D003466 ORTHO05D004102 7.0e-71 271.9 451 49.0
Prupe.4G226700 Prunus persica HOM05D003466 ORTHO05D004102 7.0e-71 271.9 448 49.1
BcaB08g34851 Brassica carinata HOM05D003466 ORTHO05D004102 1.2e-70 271.2 448 48.4
PSO339G1378 Papaver somniferum HOM05D003466 ORTHO05D004102 1.2e-70 271.2 450 49.6
CiPaw.15G127600 Carya illinoinensis HOM05D003466 ORTHO05D004102 4.5e-70 269.2 448 45.5
PSO063G0954 Papaver somniferum HOM05D003466 ORTHO05D004102 7.7e-70 268.5 450 49.6
DCAR_012262 Daucus carota HOM05D003466 ORTHO05D004102 1.0e-69 268.1 448 48.9
Migut.F01214 Erythranthe guttata HOM05D003466 ORTHO05D004102 1.0e-69 268.1 449 49.7
BcaB03g14395 Brassica carinata HOM05D003466 ORTHO05D004102 5.0e-69 265.8 444 47.5
Prupe.6G162200 Prunus persica HOM05D003466 ORTHO05D004102 8.6e-69 265.0 448 48.0
EL10Ac2g02698 Beta vulgaris HOM05D003466 ORTHO05D004102 1.1e-68 264.6 451 52.3
CSS0032791 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 7.2e-68 261.9 443 47.4
CSS0047344 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 7.2e-68 261.9 443 47.4
CAN.G1076.6 Capsicum annuum HOM05D003466 ORTHO05D004102 9.5e-68 261.5 448 49.1
Medtr8g083140 Medicago truncatula HOM05D003466 ORTHO05D004102 1.2e-67 261.2 450 47.8
Solyc01g100500.3 Solanum lycopersicum HOM05D003466 ORTHO05D004102 1.6e-67 260.8 445 44.5
ATR0697G059 Amborella trichopoda HOM05D003466 ORTHO05D004102 2.8e-67 260.0 448 48.7
Cc00_g13080 Coffea canephora HOM05D003466 ORTHO05D004102 1.4e-66 257.7 445 50.8
arahy.Tifrunner.gnm1.ann1.WPUK1Z Arachis hypogaea HOM05D003466 ORTHO05D004102 2.3e-66 256.9 450 45.3
Sc10g0003130 Simmondsia chinensis HOM05D003466 ORTHO05D004102 2.3e-66 256.9 451 52.1
Dinv13777 Davidia involucrata HOM05D003466 ORTHO05D004102 2.6e-65 253.4 398 52.5
arahy.Tifrunner.gnm1.ann1.GMJ520 Arachis hypogaea HOM05D003466 ORTHO05D004102 3.4e-65 253.1 450 44.9
Nitab4.5_0000368g0060 Nicotiana tabacum HOM05D003466 ORTHO05D004102 3.4e-65 253.1 445 45.4
FAN15G1350 Fragaria x ananassa HOM05D003466 ORTHO05D004102 4.4e-65 252.7 448 47.1
Mapoly0065s0046 Marchantia polymorpha HOM05D003466 ORTHO05D004102 1.3e-64 251.1 452 50.7
Sabra15G0065800 Salix brachista HOM05D003466 ORTHO05D004102 2.2e-64 250.4 367 47.4
Lj1C1073T5 Lonicera japonica HOM05D003466 ORTHO05D004102 2.8e-64 250.0 398 51.0
SEGI_04842 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 2.8e-64 250.0 449 46.3
QL04p079149 Quercus lobata HOM05D003466 ORTHO05D004102 1.4e-63 247.7 449 48.1
Sopen01g044010 Solanum pennellii HOM05D003466 ORTHO05D004102 3.1e-63 246.5 445 43.1
PGSC0003DMG400002770 Solanum tuberosum HOM05D003466 ORTHO05D004102 2.0e-62 243.8 445 43.4
CBR_g12232 Chara braunii HOM05D003466 ORTHO05D004102 3.5e-62 243.0 457 49.7
Pp3c6_19380 Physcomitrium patens HOM05D003466 ORTHO05D004102 1.0e-61 241.5 453 47.0
Lalb_Chr07g0186841 Lupinus albus HOM05D003466 ORTHO05D004102 6.6e-61 238.8 450 39.8
Haze_22082 Corylus avellana HOM05D003466 ORTHO05D004102 1.9e-60 237.3 398 45.0
VMungo0251G3008 Vigna mungo HOM05D003466 ORTHO05D004102 5.6e-60 235.7 401 44.4
Ca_17998_v3 Cicer arietinum L. HOM05D003466 ORTHO05D004102 9.5e-60 235.0 444 40.3
GSVIVG01029154001 Vitis vinifera HOM05D003466 ORTHO05D004102 1.2e-59 234.6 377 42.2
Lj1C1073T4 Lonicera japonica HOM05D003466 ORTHO05D004102 3.0e-58 229.9 403 48.1
AagrBONN_evm.TU.Sc2ySwM_362.1620 Anthoceros agrestis HOM05D003466 ORTHO05D004102 1.4e-55 221.1 404 51.7
FAN18G1357 Fragaria x ananassa HOM05D003466 ORTHO05D004102 6.0e-54 215.7 447 46.3
Aqoxy1G00514 Aquilegia oxysepala HOM05D003466 ORTHO05D004102 1.3e-53 214.5 451 42.8
CDE06G0321 Ceratophyllum demersum HOM05D003466 ORTHO05D004102 1.3e-53 214.5 204 55.9
SMO364G0903 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 1.8e-50 204.1 462 43.9
Ah.12g064750 Amaranthus hybridus HOM05D003466 ORTHO05D004102 2.6e-49 200.3 462 47.0
Cfa017016 Carpinus fangiana HOM05D003466 ORTHO05D004102 4.4e-49 199.5 374 37.7
COL.COLO4_23028 Corchorus olitorius HOM05D003466 ORTHO05D004102 1.3e-48 198.0 423 43.0
Oeu046439.1 Olea europaea HOM05D003466 ORTHO05D004102 1.4e-47 194.5 372 37.1
FAN27G0165 Fragaria x ananassa HOM05D003466 ORTHO05D004102 9.2e-47 191.8 343 41.7
SEGI_19842 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 9.2e-47 191.8 414 43.5
SEGI_30994 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 9.2e-47 191.8 414 43.5
COL.COLO4_28634 Corchorus olitorius HOM05D003466 ORTHO05D004102 2.3e-45 187.2 164 59.1
COL.COLO4_29543 Corchorus olitorius HOM05D003466 ORTHO05D004102 1.9e-44 184.1 398 44.7
FAN01G2678 Fragaria x ananassa HOM05D003466 ORTHO05D004102 6.2e-43 179.1 199 48.2
AUR62032478 Chenopodium quinoa HOM05D003466 ORTHO05D004102 1.2e-41 174.9 336 56.8
AUR62042249 Chenopodium quinoa HOM05D003466 ORTHO05D004102 1.5e-41 174.5 327 38.2
FAN15G3298 Fragaria x ananassa HOM05D003466 ORTHO05D004102 9.2e-39 165.2 350 37.4
vmacro09137 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 4.7e-35 152.9 186 46.8
QL04p079025 Quercus lobata HOM05D003466 ORTHO05D004102 4.0e-34 149.8 115 64.3
RcHm_v2.0_Chr3g0479581 Rosa chinensis HOM05D003466 ORTHO05D004102 1.7e-32 144.4 401 47.6
Cre05.g232950 Chlamydomonas reinhardtii HOM05D003466 ORTHO05D004102 4.9e-32 142.9 145 51.7
Lj1g0005079 Lotus japonicus HOM05D003466 ORTHO05D004102 2.4e-31 140.6 157 49.7
BraA01t03144Z Brassica rapa HOM05D003466 ORTHO05D004102 1.2e-30 138.3 310 43.9
Oeu012666.1 Olea europaea HOM05D003466 ORTHO05D004102 2.3e-29 134.0 372 35.5
MCO04G495 Micromonas commoda HOM05D003466 ORTHO05D004102 7.3e-28 129.0 195 42.6
HPP92_009864 Vanilla planifolia HOM05D003466 ORTHO05D004102 3.6e-27 126.7 217 60.4
Ah.10g029710 Amaranthus hybridus HOM05D003466 ORTHO05D004102 2.4e-26 124.0 126 51.6
CDE06G0675 Ceratophyllum demersum HOM05D003466 ORTHO05D004102 2.9e-24 117.1 107 57.9
Nitab4.5_0000841g0090 Nicotiana tabacum HOM05D003466 ORTHO05D004102 8.4e-24 115.5 361 37.7
MD01G1107400 Malus domestica HOM05D003466 ORTHO05D004102 1.3e-21 108.2 110 53.6
PRCOL_00005274 Prasinoderma coloniale HOM05D003466 ORTHO05D004102 3.9e-21 106.7 158 40.5
CARHR265890 Cardamine hirsuta HOM05D003466 ORTHO05D004102 5.1e-21 106.3 107 58.9
Carub.0008s1310 Capsella rubella HOM05D003466 ORTHO05D004102 6.6e-21 105.9 103 59.2
Os02g0294000 Oryza sativa ssp. japonica HOM05D003466 ORTHO05D004102 8.7e-21 105.5 156 42.3
SMO236G0065 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 2.5e-20 104.0 130 49.2
SMO236G0087 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 2.5e-20 104.0 130 49.2
Ah.12g064760 Amaranthus hybridus HOM05D003466 ORTHO05D004102 7.3e-20 102.4 373 44.2
SMO192G0020 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 1.3e-19 101.7 128 50.0
Prupe.2G026300 Prunus persica HOM05D003466 ORTHO05D004102 8.1e-19 99.0 73 67.1
Atru.chr1.1445 Acer truncatum HOM05D003466 ORTHO05D004102 5.3e-18 96.3 94 50.0
AL8G27400 Arabidopsis lyrata HOM05D003466 ORTHO05D004102 1.3e-16 91.7 87 57.5
Rhsim07G0175900 Rhododendron simsii HOM05D003466 ORTHO05D004102 1.1e-15 88.6 96 50.0
Eucgr.L03273 Eucalyptus grandis HOM05D003466 ORTHO05D004102 1.5e-12 78.2 319 39.8
COL.COLO4_23021 Corchorus olitorius HOM05D003466 ORTHO05D000454 1.1e-10 72.0 83 47.0
HanXRQChr11g0348041 Helianthus annuus HOM05D003466 ORTHO05D004102 1.8e-10 71.2 56 55.4
COL.COLO4_17202 Corchorus olitorius HOM05D003466 ORTHO05D004102 9.0e-10 68.9 90 42.2
vmacro20985 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 1.4e-07 61.6 83 42.2
A10p21580 Brassica napus HOM05D001738 ORTHO05D001644 4.2e-07 60.1 35 80.0
BraA10t44220Z Brassica rapa HOM05D001738 ORTHO05D001644 4.2e-07 60.1 35 80.0


User provided reference genes

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