Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10023028m.g Eutrema salsugineum HOM05D008657 ORTHO05D010869 1.1e-160 570.9 282 100.0
BcaB03g16718 Brassica carinata HOM05D008657 ORTHO05D010869 5.2e-134 482.3 312 77.2
BcaC06g36560 Brassica carinata HOM05D008657 ORTHO05D010869 1.0e-121 441.4 318 72.6
C07p02910 Brassica napus HOM05D008657 ORTHO05D010869 8.7e-121 438.3 318 72.3
BolC7t40688H Brassica oleracea HOM05D008657 ORTHO05D010869 1.9e-120 437.2 318 72.0
Sp3g32660 Schrenkiella parvula HOM05D008657 ORTHO05D010869 8.1e-119 431.8 311 72.0
A07p01450 Brassica napus HOM05D008657 ORTHO05D010869 6.9e-118 428.7 314 72.6
BraA07t27942Z Brassica rapa HOM05D008657 ORTHO05D010869 8.4e-116 421.8 318 71.1
AT2G19280 Arabidopsis thaliana HOM05D008657 ORTHO05D010869 1.3e-113 414.5 309 68.3
Carub.0003s3351 Capsella rubella HOM05D008657 ORTHO05D010869 6.6e-113 412.1 311 67.2
CARHR109740 Cardamine hirsuta HOM05D008657 ORTHO05D010869 7.1e-107 392.1 311 65.3
Aa31LG8G16330 Aethionema arabicum HOM05D008657 ORTHO05D010869 2.3e-105 387.1 309 63.8
AL3G49010 Arabidopsis lyrata HOM05D008657 ORTHO05D010869 1.4e-99 367.9 311 62.1
Dinv02560 Davidia involucrata HOM05D008657 ORTHO05D010869 1.5e-64 251.5 309 44.0
CSS0003153 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 8.5e-60 235.7 316 41.5
RcHm_v2.0_Chr1g0330001 Rosa chinensis HOM05D008657 ORTHO05D010869 2.2e-55 221.1 311 39.2
COL.COLO4_28899 Corchorus olitorius HOM05D008657 ORTHO05D010869 4.8e-55 219.9 311 40.8
Sed0024339 Sechium edule HOM05D008657 ORTHO05D010869 8.5e-52 209.1 297 39.4
Cpa.g.sc33.145 Carica papaya HOM05D008657 ORTHO05D010869 1.1e-51 208.8 311 37.9
Actinidia03250 Actinidia chinensis HOM05D008657 ORTHO05D010869 3.2e-51 207.2 310 38.4
Lj3C333T3 Lonicera japonica HOM05D008657 ORTHO05D010869 6.1e-50 203.0 305 39.0
Sc08g0000170 Simmondsia chinensis HOM05D008657 ORTHO05D010869 6.1e-50 203.0 308 36.7
CsaV3_5G029290 Cucumis sativus L. HOM05D008657 ORTHO05D010869 1.8e-49 201.4 303 38.3
ClCG07G005030 Citrullus lanatus HOM05D008657 ORTHO05D010869 5.7e-48 196.4 303 36.3
CANSAT56G3352 Cannabis sativa HOM05D008657 ORTHO05D010869 1.3e-47 195.3 312 37.2
Prupe.2G051600 Prunus persica HOM05D008657 ORTHO05D010869 2.4e-46 191.0 311 37.6
Hund22231 Selenicereus undatus HOM05D008657 ORTHO05D010869 9.1e-46 189.1 311 36.0
MELO3C011779.2 Cucumis melo HOM05D008657 ORTHO05D010869 1.5e-43 181.8 303 33.3
Gorai.010G208900 Gossypium raimondii HOM05D008657 ORTHO05D010869 2.1e-42 177.9 306 35.3
TAR376G1027 Trochodendron aralioides HOM05D008657 ORTHO05D010869 2.1e-42 177.9 310 35.2
Gohir.A06G171100 Gossypium hirsutum HOM05D008657 ORTHO05D010869 1.8e-41 174.9 306 35.0
FAN10G0285 Fragaria x ananassa HOM05D008657 ORTHO05D010869 9.2e-38 162.5 311 33.4
PGR031G0953 Punica granatum HOM05D008657 ORTHO05D010869 7.8e-37 159.5 297 32.3
Thecc.10G128900 Theobroma cacao HOM05D008657 ORTHO05D010869 1.0e-36 159.1 301 34.2
FAN06G4111 Fragaria x ananassa HOM05D008657 ORTHO05D010869 9.5e-27 125.9 145 45.5
FvH4_7g04580 Fragaria vesca HOM05D008657 ORTHO05D010869 1.6e-26 125.2 145 45.5
DCAR_018350 Daucus carota HOM05D008657 ORTHO05D010869 2.1e-26 124.8 301 26.2
FAN01G0963 Fragaria x ananassa HOM05D008657 ORTHO05D010869 2.4e-22 111.3 281 29.5
Lj3A303T33 Lonicera japonica HOM05D008657 ORTHO05D010869 1.6e-21 108.6 210 35.7
Oeu052822.1 Olea europaea HOM05D008657 ORTHO05D010869 2.7e-21 107.8 238 29.4
FAN03G0499 Fragaria x ananassa HOM05D008657 ORTHO05D010869 6.0e-21 106.7 130 43.8
Eucgr.G03180 Eucalyptus grandis HOM05D008657 ORTHO05D010869 2.1e-18 98.2 164 34.8
Gohir.D06G179000 Gossypium hirsutum HOM05D008657 ORTHO05D010869 2.1e-13 81.6 200 28.5
SalBow4G0419 Salvia bowleyana HOM05D007455 ORTHO05D009431 1.0e-12 79.3 168 31.5
Oeu039576.1 Olea europaea HOM05D007455 ORTHO05D009431 5.1e-12 77.0 190 26.8
HPP92_001299 Vanilla planifolia HOM05D007291 ORTHO05D009038 1.5e-11 75.5 290 24.8
BraA03t09431Z Brassica rapa HOM05D007455 ORTHO05D009431 7.3e-11 73.2 225 27.1
A03p00400 Brassica napus HOM05D007455 ORTHO05D009431 9.6e-11 72.8 226 27.0
HPP92_001923 Vanilla planifolia HOM05D007455 ORTHO05D009431 1.2e-10 72.4 162 28.4
C03p00670 Brassica napus HOM05D007455 ORTHO05D009431 2.1e-10 71.6 225 27.1
BolC3t12630H Brassica oleracea HOM05D007455 ORTHO05D009431 2.1e-10 71.6 225 27.1
BcaB01g06086 Brassica carinata HOM05D007455 ORTHO05D009431 3.6e-10 70.9 225 26.7
SEGI_12665 Sequoiadendron giganteum HOM05D007455 ORTHO05D009431 3.6e-10 70.9 156 26.3
BcaB01g06201 Brassica carinata HOM05D007455 ORTHO05D009431 8.1e-10 69.7 226 25.2
Cc03_g13390 Coffea canephora HOM05D007128 ORTHO05D009059 8.9e-09 66.2 242 24.8
arahy.Tifrunner.gnm1.ann1.HW3SC4 Arachis hypogaea HOM05D007291 ORTHO05D009038 1.5e-08 65.5 274 25.2
CSS0046383 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 1.5e-08 65.5 243 23.0
DCAR_005541 Daucus carota HOM05D007128 ORTHO05D009059 1.5e-08 65.5 259 22.8
MSTRG.12443 Avicennia marina HOM05D007455 ORTHO05D009431 2.6e-08 64.7 147 29.3
SEGI_11241 Sequoiadendron giganteum HOM05D007496 ORTHO05D009479 2.6e-08 64.7 148 30.4
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 4.4e-08 63.9 169 24.3
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 4.4e-08 63.9 160 27.5
CSS0003119 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 5.8e-08 63.5 243 22.6
AagrBONN_evm.TU.Sc2ySwM_228.1018 Anthoceros agrestis HOM05D000001 ORTHO05D026665 9.9e-08 62.8 192 25.5
Cc08_g05050 Coffea canephora HOM05D008483 ORTHO05D010726 9.9e-08 62.8 246 22.8
Lj3C325T0 Lonicera japonica HOM05D008657 ORTHO05D010869 9.9e-08 62.8 95 36.8
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 9.9e-08 62.8 165 24.8
COL.COLO4_24378 Corchorus olitorius HOM05D007128 ORTHO05D009059 1.7e-07 62.0 248 25.0
QL04p014212 Quercus lobata HOM05D007455 ORTHO05D009431 1.7e-07 62.0 166 27.7
MBI16_g32672_MAGBIO Magnolia biondii HOM05D008483 ORTHO05D010726 2.2e-07 61.6 201 22.4
Rhsim02G0073500 Rhododendron simsii HOM05D007128 ORTHO05D009059 2.9e-07 61.2 259 20.8
Thecc.01G192500 Theobroma cacao HOM05D006931 ORTHO05D008782 4.9e-07 60.5 182 25.8
Cc07_g13560 Coffea canephora HOM05D007291 ORTHO05D009038 6.4e-07 60.1 322 23.3
Eucgr.C02447 Eucalyptus grandis HOM05D007455 ORTHO05D009431 8.4e-07 59.7 149 26.8
HPP92_000173 Vanilla planifolia HOM05D008657 ORTHO05D010869 8.4e-07 59.7 206 24.8
PGR083G1825 Punica granatum HOM05D007128 ORTHO05D009059 1.4e-06 58.9 242 23.1
Sed0025332 Sechium edule HOM05D007455 ORTHO05D009431 1.4e-06 58.9 165 26.7
SMO143G0105 Selaginella moellendorffii HOM05D017046 ORTHO05D010847 1.4e-06 58.9 123 28.5
CSS0019242 Camellia sinensis var. sinensis HOM05D008483 ORTHO05D010726 4.2e-06 57.4 238 22.3
CSS0039397 Camellia sinensis var. sinensis HOM05D008483 ORTHO05D010726 4.2e-06 57.4 238 22.3
Nn8g41093 Nelumbo nucifera HOM05D008483 ORTHO05D010726 4.2e-06 57.4 220 24.1
Rhsim13G0211000 Rhododendron simsii HOM05D007455 ORTHO05D009431 4.2e-06 57.4 171 25.1
TAR623G1478 Trochodendron aralioides HOM05D007675 ORTHO05D009699 4.2e-06 57.4 190 23.2
TWI79G0736 Tripterygium wilfordii HOM05D007455 ORTHO05D009431 5.4e-06 57.0 146 29.5
Ca_00776_v3 Cicer arietinum L. HOM05D000091 ORTHO05D009038 7.1e-06 56.6 291 24.4
Nn1g04208 Nelumbo nucifera HOM05D007750 ORTHO05D009803 9.3e-06 56.2 175 25.7


User provided reference genes

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