Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 3.4e-295 1017.7 546 100.0
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 2.1e-265 918.7 570 85.6
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 1.5e-263 912.5 569 84.7
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 2.6e-263 911.8 571 82.0
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 2.6e-263 911.8 570 81.8
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 8.3e-262 906.7 571 81.8
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 3.2e-261 904.8 571 81.6
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 3.2e-261 904.8 571 81.6
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 7.1e-261 903.7 569 81.9
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 4.3e-258 894.4 566 82.2
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 9.5e-258 893.3 571 81.1
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 1.4e-256 889.4 569 80.7
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 4.4e-255 884.4 570 80.2
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 3.5e-252 874.8 565 80.7
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 2.1e-249 865.5 558 83.2
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 4.7e-249 864.4 554 85.0
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 1.8e-248 862.4 558 84.6
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 3.1e-248 861.7 554 84.8
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 4.0e-248 861.3 569 78.4
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 1.7e-246 855.9 554 84.3
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 5.1e-243 844.3 565 78.2
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 8.1e-241 837.0 565 77.7
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 2.2e-238 828.9 558 82.3
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 6.2e-233 810.8 531 79.5
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 1.7e-230 802.7 573 75.4
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 8.2e-209 730.7 555 68.1
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 6.9e-208 727.6 557 66.1
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 9.1e-208 727.2 558 66.7
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 1.3e-206 723.4 555 65.9
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 3.8e-206 721.8 557 65.2
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 6.5e-206 721.1 557 65.2
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 4.6e-204 714.9 559 65.7
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.4e-203 713.4 552 66.1
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 1.5e-202 709.9 552 64.9
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 2.6e-202 709.1 561 65.2
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 2.2e-201 706.1 555 65.2
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 8.2e-201 704.1 402 88.3
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 8.2e-201 704.1 556 65.5
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 3.4e-199 698.7 562 65.8
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 2.2e-198 696.0 570 61.6
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 3.2e-197 692.2 384 90.1
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.1e-196 689.5 559 64.6
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.4e-195 686.8 543 64.5
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.4e-195 686.8 554 67.9
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 3.9e-195 685.3 554 62.6
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 5.2e-195 684.9 559 63.5
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 1.1e-194 683.7 558 65.8
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.5e-194 683.3 554 64.1
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 2.0e-194 682.9 550 64.0
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 2.6e-194 682.6 560 62.7
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 5.7e-194 681.4 566 61.5
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 9.7e-194 680.6 544 63.4
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 2.8e-193 679.1 555 65.2
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 6.3e-193 677.9 545 62.9
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 2.4e-192 676.0 543 63.4
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 3.1e-192 675.6 565 62.7
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 2.0e-191 672.9 542 63.3
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 2.6e-191 672.5 566 62.5
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.3e-190 670.2 563 62.0
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 2.2e-190 669.5 567 61.7
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 2.2e-190 669.5 569 60.6
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 2.9e-190 669.1 567 62.1
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.5e-190 667.9 556 61.0
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.5e-190 667.9 556 60.8
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 2.1e-188 662.9 565 61.6
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.7e-188 662.5 549 62.3
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.7e-188 662.5 549 62.3
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 4.7e-188 661.8 559 62.8
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 6.1e-188 661.4 563 61.8
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 4.0e-187 658.7 557 61.8
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.2e-186 657.1 564 62.1
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 3.3e-186 655.6 552 59.6
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 4.4e-186 655.2 486 67.1
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 5.7e-186 654.8 580 58.4
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 3.7e-185 652.1 561 60.6
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 3.1e-184 649.0 552 59.2
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.2e-183 647.1 558 61.1
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 2.0e-183 646.4 556 62.6
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 3.8e-182 642.1 566 61.7
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 6.5e-182 641.3 551 61.2
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 6.5e-182 641.3 435 71.0
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 1.9e-181 639.8 556 60.1
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.2e-181 639.0 565 60.7
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 3.2e-181 639.0 560 59.5
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 2.7e-180 636.0 571 59.9
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.7e-180 635.2 550 60.5
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 5.2e-179 631.7 433 71.6
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 4.4e-178 628.6 471 74.9
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 5.7e-178 628.2 549 61.9
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.7e-177 626.7 589 55.5
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 1.4e-176 623.6 550 60.2
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 4.1e-176 622.1 546 59.9
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 2.0e-175 619.8 549 60.8
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 2.0e-175 619.8 549 60.1
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 4.5e-175 618.6 565 58.9
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.7e-174 616.7 444 67.8
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 3.8e-174 615.5 558 58.6
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 1.1e-173 614.0 545 58.3
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 7.2e-173 611.3 559 56.5
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 1.2e-172 610.5 563 57.0
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 4.7e-172 608.6 560 57.9
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 1.5e-170 603.6 547 58.3
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 1.0e-166 590.9 436 67.9
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 1.0e-166 590.9 560 55.0
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 1.3e-166 590.5 565 58.6
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 6.6e-166 588.2 402 71.4
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 1.2e-164 583.9 565 57.9
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 4.7e-164 582.0 550 56.9
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 8.9e-163 577.8 435 64.1
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 9.8e-162 574.3 559 56.2
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 4.9e-161 572.0 580 53.4
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 3.5e-159 565.8 558 56.3
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 9.5e-157 557.8 563 54.0
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 2.2e-153 546.6 580 55.0
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 1.4e-152 543.9 553 54.6
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 7.0e-152 541.6 568 54.8
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 3.9e-150 535.8 543 53.6
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.0e-150 535.4 549 53.4
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 7.5e-146 521.5 339 74.0
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 1.0e-142 511.1 546 51.3
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 2.4e-139 500.0 559 51.9
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.2e-135 487.6 536 51.5
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 2.7e-135 486.5 498 52.0
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 2.8e-132 476.5 545 50.3
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.5e-130 470.7 302 73.5
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 6.9e-123 445.3 431 49.9
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 5.3e-99 365.9 365 49.0
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 1.1e-96 358.2 396 50.8
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 4.8e-92 342.8 316 59.8
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.6e-87 327.8 391 48.8
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 2.7e-87 327.0 500 42.2
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 8.2e-84 315.5 199 74.4
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 8.0e-79 298.9 280 57.5
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.1e-72 278.5 359 45.4
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.5e-72 277.3 211 61.6
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 3.4e-61 240.4 156 72.4
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 1.6e-50 204.9 191 55.5
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 1.2e-47 195.3 271 47.6
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 3.5e-42 177.2 207 51.2
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 4.7e-39 166.8 169 54.4
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 9.8e-37 159.1 192 45.8
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 3.5e-34 150.6 490 25.5
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.9e-27 128.3 93 63.4
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 1.4e-22 112.1 63 79.4
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 3.2e-19 100.9 181 30.9
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 3.2e-19 100.9 79 60.8
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.2e-19 100.9 152 42.1
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 1.1e-16 92.4 51 84.3
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 1.9e-16 91.7 116 44.0
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 2.1e-15 88.2 71 57.7
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 2.1e-15 88.2 70 58.6
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 4.0e-14 84.0 71 54.9
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 4.4e-13 80.5 64 59.4
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.6e-10 72.0 88 46.6
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 7.8e-10 69.7 131 35.9
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 2.1e-07 61.6 64 46.9


User provided reference genes

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