Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 2.7e-143 511.9 245 100.0
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 1.2e-138 496.5 266 91.7
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 1.2e-138 496.5 266 91.7
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 1.2e-138 496.5 266 91.7
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 1.2e-138 496.5 266 91.7
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 1.2e-138 496.5 266 91.7
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 1.2e-138 496.5 266 91.7
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 1.2e-138 496.5 266 91.7
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 1.2e-138 496.5 266 91.7
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.7e-137 492.7 266 91.0
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.7e-137 492.7 266 91.0
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 3.5e-135 485.0 244 96.3
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 1.6e-132 476.1 266 89.1
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 3.6e-132 474.9 266 88.3
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 6.2e-132 474.2 266 88.3
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 1.4e-131 473.0 266 88.7
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 4.0e-131 471.5 263 88.6
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 5.2e-131 471.1 266 88.0
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 5.2e-131 471.1 266 88.0
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 1.5e-130 469.5 266 88.3
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 2.6e-130 468.8 266 88.3
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 2.6e-130 468.8 266 88.7
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 2.9e-129 465.3 264 87.9
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 3.8e-129 464.9 266 88.0
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 3.8e-129 464.9 266 87.6
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 8.4e-129 463.8 266 87.2
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 8.4e-129 463.8 266 87.2
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 1.1e-128 463.4 266 87.6
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 1.1e-128 463.4 266 87.6
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 1.4e-128 463.0 264 87.5
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 7.1e-128 460.7 266 87.2
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 1.6e-127 459.5 266 87.2
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 3.5e-127 458.4 263 86.7
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 1.9e-125 452.6 266 86.1
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 4.3e-125 451.4 266 85.7
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 4.3e-125 451.4 254 85.4
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 9.0e-123 443.7 250 88.4
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 1.2e-122 443.4 250 88.0
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 1.5e-122 443.0 255 87.1
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 2.6e-122 442.2 266 84.6
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 4.5e-122 441.4 251 87.6
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 2.2e-121 439.1 251 87.3
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 4.2e-120 434.9 250 87.2
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 3.0e-118 428.7 250 87.6
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.6e-116 422.9 243 86.8
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.6e-116 422.9 243 86.8
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 1.2e-114 416.8 238 87.0
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 1.5e-114 416.4 239 87.0
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 3.4e-114 415.2 238 86.6
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 3.9e-110 401.7 230 87.0
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 1.9e-109 399.4 262 77.1
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 5.6e-109 397.9 264 78.4
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 1.3e-105 386.7 244 80.7
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 1.9e-104 382.9 209 89.5
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 5.1e-102 374.8 250 78.0
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 4.1e-99 365.2 211 86.7
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 4.1e-99 365.2 211 86.7
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 2.9e-97 359.0 213 85.4
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 7.2e-96 354.4 209 85.2
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.3e-92 343.6 257 71.6
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.4e-91 340.1 200 84.0
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.3e-89 333.6 202 84.2
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 2.7e-87 325.9 209 80.9
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 2.0e-82 309.7 187 84.5
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 8.8e-78 294.3 231 68.4
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.5e-74 282.0 184 77.2
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.9e-72 276.6 145 93.1
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 3.0e-70 269.2 203 69.0
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 7.5e-69 264.6 137 94.2
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 5.3e-67 258.5 130 96.2
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.7e-66 256.1 181 75.7
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 1.0e-65 254.2 129 96.1
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 1.7e-65 253.4 161 79.5
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 1.4e-62 243.8 131 92.4
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 6.8e-62 241.5 279 44.8
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 4.4e-61 238.8 159 78.0
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 1.2e-58 230.7 148 78.4
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.2e-58 230.7 145 80.0
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.3e-49 200.7 141 73.0
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 5.0e-49 198.7 101 96.0
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 1.9e-48 196.8 101 96.0
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 4.7e-47 192.2 94 95.7
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 1.0e-46 191.0 94 95.7
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 1.0e-46 191.0 94 95.7
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 5.2e-46 188.7 94 94.7
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 4.9e-44 182.2 85 100.0
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 6.4e-44 181.8 94 89.4
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 2.4e-43 179.9 189 52.9
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 2.7e-42 176.4 100 90.0
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.3e-40 169.1 163 58.3
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.4e-38 164.1 116 70.7
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 4.9e-36 155.6 136 61.0
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 1.4e-35 154.1 81 91.4
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 2.3e-33 146.7 105 73.3
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.9e-32 143.7 107 70.1
Oeu000568.1 Olea europaea HOM05D005794 ORTHO05D006814 4.0e-30 136.0 93 74.2
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 5.2e-30 135.6 258 32.9
Nitab4.5_0000886g0250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.7e-28 130.6 76 84.2
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 2.9e-28 129.8 80 80.0
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 4.9e-28 129.0 75 84.0
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 1.3e-25 120.9 87 71.3
Gohir.D04G096432 Gossypium hirsutum HOM05D005794 ORTHO05D006814 6.6e-25 118.6 58 96.6
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 1.1e-24 117.9 67 86.6
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 1.5e-24 117.5 62 88.7
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 3.6e-23 112.8 68 79.4
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 4.0e-22 109.4 161 43.5
SMO310G0001 Selaginella moellendorffii HOM05D005794 ORTHO05D006814 3.5e-18 96.3 154 40.9
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 5.1e-17 92.4 65 73.8
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 8.7e-17 91.7 63 74.6
SHI54766 Sapria himalayana HOM05D005794 ORTHO05D006814 8.7e-17 91.7 48 85.4
SHI14272 Sapria himalayana HOM05D005794 ORTHO05D006814 5.6e-16 89.0 61 67.2
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 1.6e-15 87.4 45 88.9
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.7e-15 85.9 54 75.9
TPR.G25412 Trifolium pratense HOM05D005794 ORTHO05D006814 9.0e-14 81.6 53 84.9
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 1.2e-13 81.3 39 89.7
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.8e-13 79.0 53 79.2
SHI20514 Sapria himalayana HOM05D005794 ORTHO05D006814 5.8e-13 79.0 41 82.9
Solyc03g013460.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 5.8e-13 79.0 65 60.0
Duzib116G0892 Durio zibethinus HOM05D005794 ORTHO05D006814 1.7e-12 77.4 59 71.2
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 1.4e-11 74.3 98 46.9
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 3.2e-11 73.2 35 91.4
Aa31csc549G50 Aethionema arabicum HOM05D005794 ORTHO05D006814 3.0e-09 66.6 29 100.0
Nitab4.5_0002418g0170 Nicotiana tabacum HOM05D009000 ORTHO05D010659 3.9e-09 66.2 31 93.5
Nitab4.5_0004100g0120 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.1e-08 64.7 31 87.1
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 1.1e-08 64.7 33 84.8
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 1.9e-08 63.9 92 41.3
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.3e-07 61.2 47 66.0
SHI16155 Sapria himalayana HOM05D005794 ORTHO05D006814 1.6e-07 60.8 67 52.2
CSS0006210 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 3.6e-07 59.7 32 84.4
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 3.6e-07 59.7 30 83.3
CSS0015180 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 1.1e-06 58.2 31 83.9
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.1e-06 58.2 35 80.0
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.4e-06 57.8 68 48.5
QL93p0790_0012 Quercus lobata HOM05D003666 ORTHO05D004770 5.3e-06 55.8 153 25.5


User provided reference genes

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