Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 9.2e-83 310.1 145 100.0
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 1.3e-76 289.7 145 92.4
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 1.2e-74 283.1 145 91.0
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 1.3e-73 279.6 145 88.3
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 2.3e-73 278.9 140 94.3
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 2.3e-73 278.9 140 94.3
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 1.1e-72 276.6 145 89.0
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 1.5e-72 276.2 141 91.5
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 1.5e-72 276.2 147 89.8
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 2.5e-72 275.4 147 87.8
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 9.5e-72 273.5 147 89.8
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 1.6e-66 256.1 140 82.9
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 2.2e-60 235.7 154 69.5
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 1.5e-56 223.0 142 71.8
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 8.1e-55 217.2 141 70.9
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 1.4e-54 216.5 147 70.7
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 1.8e-54 216.1 146 67.8
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 2.4e-54 215.7 135 72.6
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 2.4e-54 215.7 144 69.4
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 2.4e-54 215.7 140 71.4
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 4.0e-54 214.9 147 70.1
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 4.0e-54 214.9 141 70.2
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 5.2e-54 214.5 140 70.7
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 6.8e-54 214.2 144 70.1
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 1.5e-53 213.0 144 70.8
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.6e-53 212.2 143 69.9
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.6e-53 212.2 142 70.4
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 2.6e-53 212.2 140 70.0
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 3.4e-53 211.8 140 69.3
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 4.4e-53 211.5 118 78.0
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 4.4e-53 211.5 143 69.2
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 7.6e-53 210.7 140 67.1
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 9.9e-53 210.3 115 80.0
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 9.9e-53 210.3 142 69.0
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 9.9e-53 210.3 141 68.8
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 2.9e-52 208.8 117 75.2
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 2.9e-52 208.8 143 69.2
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 3.8e-52 208.4 123 73.2
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 4.9e-52 208.0 144 68.1
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 8.4e-52 207.2 136 69.1
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 1.1e-51 206.8 137 70.8
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 1.9e-51 206.1 143 67.8
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 2.4e-51 205.7 135 69.6
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 3.2e-51 205.3 141 67.4
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 7.1e-51 204.1 143 68.5
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 9.2e-51 203.8 144 66.7
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 1.6e-50 203.0 115 77.4
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 2.1e-50 202.6 141 66.0
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 2.1e-50 202.6 146 63.7
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 3.5e-50 201.8 141 66.7
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 3.5e-50 201.8 140 68.6
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 3.5e-50 201.8 136 67.6
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 6.0e-50 201.1 144 65.3
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 6.0e-50 201.1 115 76.5
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 7.8e-50 200.7 136 66.9
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 7.8e-50 200.7 135 68.9
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 1.0e-49 200.3 141 66.0
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 1.0e-49 200.3 140 67.1
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 1.3e-49 199.9 142 64.8
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 1.3e-49 199.9 137 65.7
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 1.7e-49 199.5 144 66.0
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 2.3e-49 199.1 140 65.7
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 2.3e-49 199.1 115 73.0
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 3.0e-49 198.7 142 64.1
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 3.0e-49 198.7 137 66.4
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 3.9e-49 198.4 142 64.1
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 3.9e-49 198.4 122 73.0
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 6.6e-49 197.6 141 65.2
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 6.6e-49 197.6 140 66.4
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 1.1e-48 196.8 138 65.9
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 1.1e-48 196.8 142 66.9
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 2.5e-48 195.7 136 65.4
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 2.5e-48 195.7 136 66.2
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 2.5e-48 195.7 136 66.9
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 3.3e-48 195.3 140 62.1
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 5.6e-48 194.5 136 67.6
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 1.2e-47 193.4 139 65.5
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 1.6e-47 193.0 119 73.1
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 1.6e-47 193.0 133 63.9
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 2.1e-47 192.6 124 65.3
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 2.1e-47 192.6 125 68.0
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 2.8e-47 192.2 141 63.1
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 2.8e-47 192.2 141 63.1
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 3.6e-47 191.8 141 61.7
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 6.2e-47 191.0 124 64.5
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 8.1e-47 190.7 115 73.0
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 4.0e-46 188.3 140 62.1
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 4.0e-46 188.3 140 62.1
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 4.4e-45 184.9 125 61.6
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 9.9e-45 183.7 144 63.2
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 1.7e-44 183.0 134 61.9
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 2.2e-44 182.6 149 57.7
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 2.2e-44 182.6 149 57.7
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 2.9e-44 182.2 165 55.2
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 3.8e-44 181.8 134 61.9
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 6.4e-44 181.0 125 60.8
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 1.1e-43 180.3 139 61.9
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 1.9e-43 179.5 139 62.6
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 9.3e-43 177.2 109 70.6
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 9.0e-38 160.6 138 60.1
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 3.9e-33 145.2 119 60.5
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 1.9e-32 142.9 81 76.5
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 2.5e-32 142.5 132 52.3
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 5.6e-32 141.4 116 56.0
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 2.8e-31 139.0 81 74.1
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 5.5e-27 124.8 75 72.0
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 1.6e-26 123.2 114 45.6
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 1.8e-25 119.8 78 67.9
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 2.3e-25 119.4 135 47.4
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 5.1e-25 118.2 96 51.0
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 1.5e-24 116.7 92 56.5
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 2.5e-24 115.9 92 55.4
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 2.4e-22 109.4 89 50.6
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 4.0e-22 108.6 117 48.7
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 3.8e-20 102.1 55 78.2
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 1.4e-19 100.1 93 43.0
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 1.9e-19 99.8 140 45.0
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 1.8e-17 93.2 93 46.2
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 4.3e-16 88.6 99 38.4
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 5.7e-16 88.2 92 44.6
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 3.8e-12 75.5 67 50.7
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 5.0e-12 75.1 56 58.9
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 3.6e-10 68.9 41 73.2
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.1e-08 63.9 65 53.8
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 2.5e-08 62.8 77 41.6
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 2.8e-07 59.3 37 70.3
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 8.2e-07 57.8 39 64.1
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 9.1e-06 54.3 88 38.6


User provided reference genes

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