Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10022876m.g Eutrema salsugineum HOM05D002799 ORTHO05D008889 3.7e-94 348.2 177 100.0
Sp3g29930 Schrenkiella parvula HOM05D002799 ORTHO05D008889 3.5e-84 315.1 174 91.4
AT2G16790 Arabidopsis thaliana HOM05D002799 ORTHO05D008889 6.6e-83 310.8 177 90.4
Carub.0003s3061 Capsella rubella HOM05D002799 ORTHO05D008889 1.5e-82 309.7 177 89.8
BcaC04g23004 Brassica carinata HOM05D002799 ORTHO05D008889 1.2e-81 306.6 175 89.1
C09p13130 Brassica napus HOM05D002799 ORTHO05D008889 1.2e-81 306.6 175 89.1
BolC9t54208H Brassica oleracea HOM05D002799 ORTHO05D008889 1.2e-81 306.6 175 89.1
BcaB07g31750 Brassica carinata HOM05D002799 ORTHO05D008889 6.1e-81 304.3 175 89.1
AL3G49530 Arabidopsis lyrata HOM05D002799 ORTHO05D008889 2.3e-80 302.4 174 88.5
BraA09t36756Z Brassica rapa HOM05D002799 ORTHO05D008889 3.0e-80 302.0 175 86.9
A09p11140 Brassica napus HOM05D002799 ORTHO05D008889 4.0e-80 301.6 174 87.9
CARHR107040 Cardamine hirsuta HOM05D002799 ORTHO05D008889 3.4e-79 298.5 175 88.0
Aa31LG8G14030 Aethionema arabicum HOM05D002799 ORTHO05D008889 1.3e-67 260.0 169 77.5
THA.LOC104803694 Tarenaya hassleriana HOM05D002799 ORTHO05D008889 3.2e-61 238.8 173 69.4
Manes.08G164500 Manihot esculenta HOM05D002799 ORTHO05D008889 4.4e-55 218.4 166 69.3
Gohir.A11G169200 Gossypium hirsutum HOM05D002799 ORTHO05D008889 1.7e-54 216.5 166 67.5
Gohir.D11G175400 Gossypium hirsutum HOM05D002799 ORTHO05D008889 8.3e-54 214.2 166 66.9
Gorai.007G188000 Gossypium raimondii HOM05D002799 ORTHO05D008889 1.1e-53 213.8 166 66.9
Potri.019G048200 Populus trichocarpa HOM05D002799 ORTHO05D008889 1.4e-53 213.4 176 61.9
Thecc.04G001600 Theobroma cacao HOM05D002799 ORTHO05D008889 9.2e-53 210.7 166 66.3
DCAR_010548 Daucus carota HOM05D002799 ORTHO05D008889 1.6e-52 209.9 170 61.8
CSS0012005 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 3.5e-52 208.8 170 63.5
CSS0036576 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 3.5e-52 208.8 170 63.5
ECA236G2689 Erigeron canadensis HOM05D002799 ORTHO05D008889 7.8e-52 207.6 166 62.0
Dinv29173 Davidia involucrata HOM05D002799 ORTHO05D008889 1.3e-51 206.8 166 63.3
Eucgr.K03383 Eucalyptus grandis HOM05D002799 ORTHO05D008889 2.3e-51 206.1 173 61.3
Actinidia08736 Actinidia chinensis HOM05D002799 ORTHO05D008889 3.0e-51 205.7 166 63.3
TWI60G0329 Tripterygium wilfordii HOM05D002799 ORTHO05D008889 3.0e-51 205.7 162 66.7
Nitab4.5_0002229g0090 Nicotiana tabacum HOM05D002799 ORTHO05D008889 3.9e-51 205.3 170 61.8
arahy.Tifrunner.gnm1.ann1.LMI616 Arachis hypogaea HOM05D002799 ORTHO05D008889 5.1e-51 204.9 167 59.3
Haze_00591 Corylus avellana HOM05D002799 ORTHO05D008889 5.1e-51 204.9 166 63.9
Nitab4.5_0000207g0420 Nicotiana tabacum HOM05D002799 ORTHO05D008889 5.1e-51 204.9 170 61.8
Rhsim03G0220500 Rhododendron simsii HOM05D000526 ORTHO05D000956 5.1e-51 204.9 166 63.9
QL09p025834 Quercus lobata HOM05D002799 ORTHO05D008889 6.6e-51 204.5 173 60.1
Sabra19G0057600 Salix brachista HOM05D002799 ORTHO05D008889 6.6e-51 204.5 176 59.7
CAN.G1110.21 Capsicum annuum HOM05D002799 ORTHO05D008889 1.1e-50 203.8 170 62.9
arahy.Tifrunner.gnm1.ann1.10QB4Z Arachis hypogaea HOM05D002799 ORTHO05D008889 1.5e-50 203.4 167 59.3
Ciclev10032834m.g Citrus clementina HOM05D002799 ORTHO05D008889 1.5e-50 203.4 175 60.0
RcHm_v2.0_Chr1g0383841 Rosa chinensis HOM05D002799 ORTHO05D008889 1.9e-50 203.0 173 59.5
Sopen10g002540 Solanum pennellii HOM05D002799 ORTHO05D008889 1.9e-50 203.0 170 61.8
arahy.Tifrunner.gnm1.ann1.31RF02 Arachis hypogaea HOM05D002799 ORTHO05D008889 2.5e-50 202.6 167 59.3
arahy.Tifrunner.gnm1.ann1.B4EAVD Arachis hypogaea HOM05D002799 ORTHO05D008889 2.5e-50 202.6 167 59.3
GSVIVG01024450001 Vitis vinifera HOM05D002799 ORTHO05D008889 4.3e-50 201.8 170 62.4
TAR629G0193 Trochodendron aralioides HOM05D002799 ORTHO05D008889 9.6e-50 200.7 171 60.2
Cc05_g12950 Coffea canephora HOM05D002799 ORTHO05D008889 1.2e-49 200.3 168 60.1
Sed0001745 Sechium edule HOM05D002799 ORTHO05D008889 1.2e-49 200.3 176 58.5
PGSC0003DMG400024993 Solanum tuberosum HOM05D002799 ORTHO05D008889 1.2e-49 200.3 166 62.0
CiPaw.05G237000 Carya illinoinensis HOM05D002799 ORTHO05D008889 3.6e-49 198.7 166 60.8
MELO3C005426.2 Cucumis melo HOM05D002799 ORTHO05D008889 8.1e-49 197.6 171 60.2
Prupe.2G323800 Prunus persica HOM05D002799 ORTHO05D008889 1.1e-48 197.2 170 59.4
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.8e-48 196.4 166 58.4
FvH4_7g33591 Fragaria vesca HOM05D002799 ORTHO05D008889 2.4e-48 196.1 166 57.8
MD07G1305700 Malus domestica HOM05D002799 ORTHO05D008889 2.4e-48 196.1 170 60.0
FvH4_7g33580 Fragaria vesca HOM05D002799 ORTHO05D008889 4.0e-48 195.3 166 57.8
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 4.0e-48 195.3 166 58.4
Lalb_Chr09g0335071 Lupinus albus HOM05D002799 ORTHO05D008889 5.2e-48 194.9 166 57.8
TPR.G670 Trifolium pratense HOM05D002799 ORTHO05D008889 8.9e-48 194.1 169 59.8
Migut.M01834 Erythranthe guttata HOM05D002799 ORTHO05D008889 1.5e-47 193.4 166 59.6
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.5e-47 193.4 166 57.8
SGA_v2.0_scaffold70G23573 Striga asiatica HOM05D002799 ORTHO05D008889 2.0e-47 193.0 172 58.7
Peaxi162Scf00257g00081 Petunia axillaris HOM05D002799 ORTHO05D008889 2.6e-47 192.6 157 63.7
MSTRG.17884 Avicennia marina HOM05D002799 ORTHO05D008889 3.4e-47 192.2 166 61.4
Nn1g02011 Nelumbo nucifera HOM05D002799 ORTHO05D008889 3.4e-47 192.2 174 57.5
Atru.chr12.2012 Acer truncatum HOM05D002799 ORTHO05D008889 9.9e-47 190.7 185 55.1
CANSAT21G1155 Cannabis sativa HOM05D002799 ORTHO05D008889 9.9e-47 190.7 167 58.1
Medtr8g063470 Medicago truncatula HOM05D002799 ORTHO05D008889 1.3e-46 190.3 169 58.0
CsaV3_5G005340 Cucumis sativus L. HOM05D002799 ORTHO05D008889 1.7e-46 189.9 164 61.0
vmacro06499 Vaccinium macrocarpon HOM05D002799 ORTHO05D008889 1.7e-46 189.9 157 61.8
Oeu053393.1 Olea europaea HOM05D002799 ORTHO05D008889 2.2e-46 189.5 157 62.4
Nn3g19277 Nelumbo nucifera HOM05D002799 ORTHO05D008889 8.4e-46 187.6 160 60.0
Duzib133G0126 Durio zibethinus HOM05D002799 ORTHO05D008889 2.7e-44 182.6 155 61.3
EL10Ac3g05099 Beta vulgaris HOM05D002799 ORTHO05D008889 6.0e-44 181.4 166 56.6
Solyc10g006600.4 Solanum lycopersicum HOM05D002799 ORTHO05D008889 1.3e-43 180.3 130 67.7
Os06g0114650 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D008889 2.3e-43 179.5 165 55.2
AUR62028150 Chenopodium quinoa HOM05D002799 ORTHO05D008889 3.0e-43 179.1 166 57.8
Ah.04g157280 Amaranthus hybridus HOM05D002799 ORTHO05D008889 8.7e-43 177.6 166 54.8
Glyma.18G134600 Glycine max HOM05D002799 ORTHO05D008889 8.7e-43 177.6 169 52.7
Glyma.08G289900 Glycine max HOM05D002799 ORTHO05D008889 2.5e-42 176.0 169 53.8
VMungo0251G2787 Vigna mungo HOM05D002799 ORTHO05D008889 2.5e-42 176.0 167 53.9
Phvul.003G054200 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 4.3e-42 175.3 170 52.9
unitig_746.g26651 Utricularia gibba HOM05D002799 ORTHO05D008889 4.3e-42 175.3 170 53.5
Lsat_1_v5_gn_5_146100 Lactuca sativa HOM05D002799 ORTHO05D008889 9.6e-42 174.1 172 53.5
Phvul.003G053900 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 1.6e-41 173.3 170 52.4
Lj4g0019925 Lotus japonicus HOM05D002799 ORTHO05D008889 2.1e-41 172.9 161 55.3
Lj1P1032T28 Lonicera japonica HOM05D002799 ORTHO05D008889 2.8e-41 172.6 155 58.1
PSO675G5486 Papaver somniferum HOM05D002799 ORTHO05D008889 4.8e-41 171.8 187 50.3
PSO717G0064 Papaver somniferum HOM05D002799 ORTHO05D008889 4.8e-41 171.8 187 50.3
Lsat_1_v5_gn_8_74380 Lactuca sativa HOM05D002799 ORTHO05D008889 6.2e-41 171.4 171 52.6
AagrBONN_evm.TU.Sc2ySwM_362.1504 Anthoceros agrestis HOM05D002799 ORTHO05D008889 1.4e-37 160.2 183 45.4
ATR0829G224 Amborella trichopoda HOM05D002799 ORTHO05D008889 7.1e-37 157.9 191 45.5
BcaB03g16409 Brassica carinata HOM05D002799 ORTHO05D008889 2.1e-36 156.4 110 80.0
PGR004G1571 Punica granatum HOM05D002799 ORTHO05D008889 6.0e-36 154.8 131 59.5
Aqoxy7G00884 Aquilegia oxysepala HOM05D002799 ORTHO05D008889 6.6e-35 151.4 137 57.7
Mapoly0046s0106 Marchantia polymorpha HOM05D002799 ORTHO05D008889 6.6e-35 151.4 177 46.3
ClCG01G005050 Citrullus lanatus HOM05D002799 ORTHO05D008889 8.7e-35 151.0 137 57.7
Ca_14681_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 3.3e-34 149.1 132 58.3
COL.COLO4_19775 Corchorus olitorius HOM05D002799 ORTHO05D008889 1.6e-33 146.7 133 58.6
Pp3c5_2750 Physcomitrium patens HOM05D002799 ORTHO05D008889 1.6e-33 146.7 189 42.9
C07p06790 Brassica napus HOM05D002799 ORTHO05D008889 1.1e-32 144.1 132 60.6
Sc19g0000240 Simmondsia chinensis HOM05D002799 ORTHO05D008889 5.3e-32 141.7 142 53.5
Psat4g127040 Pisum sativum HOM05D002799 ORTHO05D008889 9.9e-31 137.5 132 54.5
TPR.G26908 Trifolium pratense HOM05D002799 ORTHO05D008889 8.4e-30 134.4 133 52.6
SMO174G0264 Selaginella moellendorffii HOM05D002799 ORTHO05D008889 1.9e-29 133.3 147 46.3
Rhsim03G0164800 Rhododendron simsii HOM05D002799 ORTHO05D008889 5.1e-27 125.2 104 61.5
MD01G1233600 Malus domestica HOM05D002799 ORTHO05D008889 1.5e-26 123.6 92 60.9
SHI03438 Sapria himalayana HOM05D002799 ORTHO05D008889 6.5e-22 108.2 130 49.2
HPP92_002455 Vanilla planifolia HOM05D002799 ORTHO05D008889 1.9e-21 106.7 115 47.8
PSO675G4133 Papaver somniferum HOM05D002799 ORTHO05D008889 4.2e-21 105.5 152 40.8
Cre08.g385750 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D008889 2.7e-20 102.8 169 34.9
PRCOL_00003203 Prasinoderma coloniale HOM05D002799 ORTHO05D008889 6.5e-14 81.6 143 39.9
Cfa026682 Carpinus fangiana HOM05D002799 ORTHO05D008889 1.1e-13 80.9 161 32.9
Ca_28676_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 2.7e-12 76.3 170 29.4
MCO08G110 Micromonas commoda HOM05D002799 ORTHO05D008889 2.7e-12 76.3 152 32.2
HanXRQChr10g0305151 Helianthus annuus HOM05D002799 ORTHO05D008889 1.4e-08 63.9 48 58.3


User provided reference genes

Program Settings