Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 6.9e-173 610.5 303 100.0
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 6.9e-173 610.5 303 100.0
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.4e-157 559.7 359 80.5
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 1.2e-156 556.6 359 80.8
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 1.2e-156 556.6 359 80.8
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 1.2e-156 556.6 359 80.8
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 3.8e-155 551.6 359 80.5
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 3.8e-155 551.6 359 79.9
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 1.1e-154 550.1 359 79.4
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 1.4e-154 549.7 359 80.2
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 1.2e-153 546.6 360 79.2
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 6.7e-152 540.8 359 78.8
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 6.7e-152 540.8 359 78.8
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 1.3e-150 536.6 359 77.7
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 4.6e-145 518.1 349 77.1
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 4.6e-145 518.1 349 77.1
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 4.6e-145 518.1 349 77.1
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 4.3e-143 511.5 359 73.3
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.4e-133 479.9 345 71.3
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.2e-124 450.3 341 70.1
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 3.0e-120 435.6 362 63.3
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 2.8e-118 429.1 354 63.0
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 8.2e-118 427.6 349 64.8
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 8.2e-118 427.6 350 64.3
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 1.4e-117 426.8 353 63.7
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 1.4e-117 426.8 353 63.5
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 1.8e-117 426.4 351 63.2
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 7.0e-117 424.5 353 63.2
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 3.5e-116 422.2 349 64.2
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 4.5e-116 421.8 353 62.9
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 5.9e-116 421.4 319 67.7
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 7.7e-116 421.0 347 64.3
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 7.7e-116 421.0 355 62.8
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 2.9e-115 419.1 354 60.2
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 1.1e-114 417.2 347 63.1
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.1e-114 417.2 349 61.0
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.1e-114 417.2 349 61.0
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 1.5e-114 416.8 354 61.9
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 1.9e-114 416.4 366 60.4
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 5.5e-114 414.8 354 62.7
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 5.5e-114 414.8 348 62.6
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 5.5e-114 414.8 321 66.0
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 1.2e-113 413.7 357 62.2
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 1.2e-113 413.7 348 62.4
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 1.6e-113 413.3 349 62.2
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 2.7e-113 412.5 353 62.6
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 4.7e-113 411.8 362 60.2
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 8.0e-113 411.0 325 65.8
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 1.0e-112 410.6 348 62.9
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 3.0e-112 409.1 354 60.7
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 3.0e-112 409.1 371 58.0
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 4.0e-112 408.7 360 60.0
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 5.2e-112 408.3 351 60.1
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 5.2e-112 408.3 360 59.2
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 6.7e-112 407.9 359 60.4
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 8.8e-112 407.5 381 58.5
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 1.5e-111 406.8 348 62.1
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 2.0e-111 406.4 320 65.6
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 2.6e-111 406.0 358 58.4
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 3.3e-111 405.6 329 64.1
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 5.7e-111 404.8 352 60.8
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 5.7e-111 404.8 348 61.5
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 7.5e-111 404.4 348 61.8
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 9.7e-111 404.1 328 62.8
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 9.7e-111 404.1 300 67.0
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 1.3e-110 403.7 356 59.8
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 8.2e-110 401.0 317 64.0
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 8.2e-110 401.0 340 61.5
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 1.4e-109 400.2 323 63.5
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 1.8e-109 399.8 348 60.6
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 1.2e-108 397.1 353 58.9
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 1.6e-108 396.7 340 61.2
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 5.9e-108 394.8 341 61.6
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 1.0e-107 394.0 356 59.6
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 1.3e-107 393.7 346 60.7
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 1.3e-107 393.7 375 57.3
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 1.7e-107 393.3 358 57.8
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 1.7e-107 393.3 297 66.0
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 2.9e-107 392.5 329 61.4
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 1.1e-106 390.6 341 59.8
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.5e-106 390.2 324 61.7
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.5e-106 390.2 324 61.7
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 3.2e-106 389.0 350 58.6
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 5.5e-106 388.3 295 66.1
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 5.5e-106 388.3 341 59.5
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 7.2e-106 387.9 300 63.3
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 7.2e-106 387.9 349 59.3
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 9.4e-106 387.5 349 57.0
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 2.7e-105 386.0 335 60.3
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 4.7e-105 385.2 327 60.2
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 8.0e-105 384.4 281 69.4
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 1.0e-104 384.0 321 63.2
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.4e-104 383.6 313 61.3
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 1.8e-104 383.3 300 63.0
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 6.8e-104 381.3 337 59.1
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 1.5e-103 380.2 328 59.1
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 2.6e-103 379.4 300 63.3
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 2.6e-103 379.4 343 57.7
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 1.3e-102 377.1 276 67.8
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 1.4e-101 373.6 350 58.9
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 4.1e-101 372.1 339 58.1
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 2.7e-100 369.4 323 61.3
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 3.5e-100 369.0 333 60.1
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 8.6e-99 364.4 345 57.1
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 1.6e-97 360.1 322 56.5
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 1.6e-97 360.1 297 60.6
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 3.6e-97 359.0 336 58.0
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.0e-96 357.5 348 56.3
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 1.4e-96 357.1 342 55.0
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 8.8e-96 354.4 389 52.4
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 1.5e-95 353.6 338 57.7
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 7.5e-95 351.3 331 55.3
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 2.4e-93 346.3 300 56.7
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 2.4e-93 346.3 270 67.0
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 3.1e-93 345.9 380 52.6
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.2e-92 344.0 266 65.0
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 5.0e-91 338.6 278 62.6
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 5.2e-88 328.6 256 66.0
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 8.9e-88 327.8 353 54.4
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 2.6e-87 326.2 367 50.1
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 9.8e-87 324.3 368 49.7
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 2.2e-86 323.2 253 65.6
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 3.7e-86 322.4 228 71.9
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 3.2e-85 319.3 208 73.6
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 4.1e-85 318.9 359 51.3
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 3.0e-83 312.8 270 60.7
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.5e-82 310.5 225 67.6
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 7.3e-82 308.1 215 68.4
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 8.0e-81 304.7 229 66.4
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 3.2e-77 292.7 353 48.2
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 1.6e-76 290.4 233 64.8
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 1.4e-72 277.3 313 48.2
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 3.4e-71 272.7 333 48.3
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.2e-63 247.7 232 58.6
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 7.1e-61 238.4 358 42.2
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.2e-60 237.7 174 68.4
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 2.1e-57 226.9 176 63.6
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.6e-44 184.1 261 44.4
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 3.7e-41 172.9 178 54.5
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 5.6e-34 149.1 125 60.0
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.8e-32 144.1 166 50.0
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 7.1e-29 132.1 245 31.0
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.1e-26 124.8 87 66.7
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.3e-25 121.3 70 77.1
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.4e-24 117.1 90 65.6
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 1.2e-23 114.8 82 70.7
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.0e-23 114.0 79 67.1
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 4.5e-23 112.8 142 48.6
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 8.5e-22 108.6 85 58.8
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 2.5e-18 97.1 87 56.3
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.0e-15 87.4 89 43.8
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 5.9e-15 85.9 79 50.6
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.7e-14 84.3 53 66.0
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 2.9e-14 83.6 106 47.2
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.8e-14 83.2 65 60.0
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 2.1e-12 77.4 52 65.4
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 1.0e-11 75.1 105 43.8


User provided reference genes

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