Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10022767m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 9.2e-182 640.2 345 100.0
AT2G17787 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 7.8e-80 301.6 383 54.6
C07p05400 Brassica napus HOM05D004095 ORTHO05D003197 1.0e-76 291.2 362 54.7
BolC7t40940H Brassica oleracea HOM05D004095 ORTHO05D003197 6.8e-76 288.5 362 54.4
A09p11580 Brassica napus HOM05D004095 ORTHO05D003197 8.9e-76 288.1 352 51.7
BraA09t36805Z Brassica rapa HOM05D004095 ORTHO05D003197 1.4e-73 280.8 350 53.4
AL3G50810 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 2.3e-71 273.5 382 52.9
BcaC06g36322 Brassica carinata HOM05D004095 ORTHO05D003197 2.8e-69 266.5 362 53.0
BcaC04g22942 Brassica carinata HOM05D004095 ORTHO05D003197 8.0e-69 265.0 357 54.6
C09p13630 Brassica napus HOM05D004095 ORTHO05D003197 8.0e-69 265.0 357 54.3
BraA07t28113Z Brassica rapa HOM05D004095 ORTHO05D003197 6.8e-68 261.9 361 51.2
A07p03170 Brassica napus HOM05D004095 ORTHO05D003197 9.8e-67 258.1 361 50.4
Carub.0003s3193 Capsella rubella HOM05D004095 ORTHO05D003197 3.7e-66 256.1 389 49.9
CARHR108180 Cardamine hirsuta HOM05D004095 ORTHO05D003197 4.3e-62 242.7 355 49.6
BcaB07g31703 Brassica carinata HOM05D004095 ORTHO05D003197 1.2e-59 234.6 353 50.7
CARHR244340 Cardamine hirsuta HOM05D004095 ORTHO05D003197 2.1e-48 197.2 384 43.2
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 6.2e-45 185.7 393 41.0
A03p63990 Brassica napus HOM05D004095 ORTHO05D003197 6.4e-42 175.6 384 41.1
THA.LOC104807504 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 1.1e-41 174.9 382 40.1
BraA03t15466Z Brassica rapa HOM05D004095 ORTHO05D003197 4.2e-41 172.9 387 41.1
BraA01t00262Z Brassica rapa HOM05D004095 ORTHO05D003197 8.7e-39 165.2 368 44.0
BcaNung05051 Brassica carinata HOM05D004095 ORTHO05D003197 1.9e-38 164.1 375 39.7
AL7G15100 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 1.6e-37 161.0 376 43.9
C01p03060 Brassica napus HOM05D004095 ORTHO05D003197 3.6e-37 159.8 371 41.5
Sp7g33720 Schrenkiella parvula HOM05D004095 ORTHO05D003197 3.4e-35 153.3 394 40.6
Aa31LG6G12890 Aethionema arabicum HOM05D004095 ORTHO05D003197 4.5e-35 152.9 409 38.9
AT4G35940 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 4.9e-34 149.4 393 38.4
BolC7t46570H Brassica oleracea HOM05D004095 ORTHO05D003197 1.6e-32 144.4 395 37.2
Thhalv10027062m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 2.1e-32 144.1 291 39.2
BcaNung00778 Brassica carinata HOM05D004095 ORTHO05D003197 2.7e-32 143.7 372 40.6
BolC1t00292H Brassica oleracea HOM05D004095 ORTHO05D003197 1.3e-31 141.4 372 36.6
C07p61450 Brassica napus HOM05D004095 ORTHO05D003197 5.1e-31 139.4 372 38.7
Carub.0007s0428 Capsella rubella HOM05D004095 ORTHO05D003197 2.8e-29 133.7 393 35.4
A01p02760 Brassica napus HOM05D004095 ORTHO05D003197 2.4e-28 130.6 368 39.9
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 2.7e-24 117.1 365 30.4
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 1.4e-20 104.8 376 32.4
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 1.4e-20 104.8 375 32.3
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 9.0e-20 102.1 372 33.3
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.2e-19 101.7 375 35.5
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 4.9e-18 96.3 372 36.8
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.1e-17 95.1 373 34.9
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 7.1e-17 92.4 374 32.4
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 7.9e-16 89.0 374 31.3
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 1.8e-15 87.8 369 33.3
Ciclev10025767m.g Citrus clementina HOM05D004095 ORTHO05D003197 3.9e-15 86.7 99 46.5
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.9e-14 84.3 368 33.2
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 2.5e-14 84.0 358 32.1
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 4.8e-13 79.7 367 31.3
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.0e-10 72.0 359 29.0
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 6.5e-10 69.3 359 28.7
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 6.5e-10 69.3 370 29.7
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 8.5e-10 68.9 382 27.0
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 1.1e-09 68.6 381 31.0
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 1.4e-09 68.2 366 31.1
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 1.9e-09 67.8 385 30.4
Gorai.008G208400 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.5e-09 67.4 137 33.6
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 2.5e-09 67.4 80 38.8
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 5.5e-09 66.2 370 30.0
Prupe.7G171900 Prunus persica HOM05D004095 ORTHO05D003197 9.3e-09 65.5 152 42.1
Nn5g30782 Nelumbo nucifera HOM05D004095 ORTHO05D003197 1.6e-08 64.7 75 36.0
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 2.1e-08 64.3 357 25.8
Gohir.D12G193466 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.6e-08 63.5 137 32.1
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 6.1e-08 62.8 369 29.8
CSS0036757 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 7.9e-08 62.4 82 36.6
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 1.4e-07 61.6 92 41.3
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 1.4e-07 61.6 85 35.3
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.8e-07 61.2 79 41.8
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.8e-07 61.2 79 41.8
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 2.3e-07 60.8 80 38.8
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 3.9e-07 60.1 356 30.1
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 6.7e-07 59.3 369 29.3
CiPaw.08G067700 Carya illinoinensis HOM05D004095 ORTHO05D003197 6.7e-07 59.3 356 29.5
FvH4_2g38160 Fragaria vesca HOM05D004095 ORTHO05D003197 6.7e-07 59.3 76 43.4
unitig_0.g2088 Utricularia gibba HOM05D004095 ORTHO05D003197 8.8e-07 58.9 79 36.7
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.1e-06 58.5 79 39.2
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 1.1e-06 58.5 82 37.8
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 1.1e-06 58.5 81 38.3
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 1.5e-06 58.2 360 26.4
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 1.9e-06 57.8 184 29.9
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 1.9e-06 57.8 88 33.0
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 2.5e-06 57.4 383 29.2
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 3.3e-06 57.0 88 33.0
FAN15G2156 Fragaria x ananassa HOM05D004095 ORTHO05D003197 3.3e-06 57.0 86 38.4
PGR119G1825 Punica granatum HOM05D004095 ORTHO05D003197 3.3e-06 57.0 132 32.6
FAN20G0678 Fragaria x ananassa HOM05D004095 ORTHO05D003197 4.3e-06 56.6 76 42.1
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 4.3e-06 56.6 366 31.1
MSTRG.22345 Avicennia marina HOM05D004095 ORTHO05D003197 5.7e-06 56.2 373 26.5
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 5.7e-06 56.2 76 39.5
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 5.7e-06 56.2 356 23.3
TAR628G1526 Trochodendron aralioides HOM05D004095 ORTHO05D003197 5.7e-06 56.2 83 37.3
Ah.00g000350 Amaranthus hybridus HOM05D004095 ORTHO05D003197 7.4e-06 55.8 123 34.1
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 7.4e-06 55.8 126 31.0
BolC9t54253H Brassica oleracea HOM05D004095 ORTHO05D003197 9.7e-06 55.5 37 78.4
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 9.7e-06 55.5 370 27.8


User provided reference genes

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