Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 1.3e-194 682.9 371 100.0
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 6.8e-191 670.6 371 97.6
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 3.2e-188 661.8 371 95.4
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 3.0e-186 655.2 371 94.1
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 3.9e-186 654.8 371 94.9
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 1.5e-185 652.9 370 95.4
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 3.3e-185 651.7 371 94.1
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 3.3e-185 651.7 371 94.1
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 4.3e-185 651.4 371 94.1
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 6.2e-184 647.5 371 93.8
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 1.4e-183 646.4 371 93.5
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 1.8e-183 646.0 371 93.3
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 1.8e-183 646.0 371 93.3
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 6.8e-183 644.0 371 93.0
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 1.2e-182 643.3 371 93.3
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 1.5e-182 642.9 371 92.7
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.5e-182 642.9 371 93.3
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 2.6e-182 642.1 373 93.8
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 2.4e-180 635.6 369 94.6
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 7.1e-180 634.0 372 93.8
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 7.1e-180 634.0 372 93.8
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 3.9e-178 628.2 371 92.5
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 5.6e-177 624.4 369 92.1
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 3.0e-170 602.1 369 88.1
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 3.4e-158 562.0 371 83.6
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 2.7e-147 525.8 296 94.6
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 4.3e-137 491.9 367 74.7
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 2.2e-136 489.6 317 87.7
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 6.3e-136 488.0 366 74.0
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 6.9e-135 484.6 371 73.0
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 1.2e-134 483.8 369 73.2
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 1.5e-134 483.4 373 74.3
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 2.6e-134 482.6 365 73.2
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 1.3e-133 480.3 365 74.5
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 1.7e-133 479.9 374 73.5
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 2.2e-133 479.6 367 74.1
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 1.1e-132 477.2 366 73.8
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.4e-132 476.9 365 74.2
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 3.2e-132 475.7 368 72.6
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.5e-132 474.9 358 74.9
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 7.2e-132 474.6 365 74.5
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.1e-131 473.0 358 74.6
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 2.1e-131 473.0 344 76.5
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 4.7e-131 471.9 380 71.8
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 4.7e-131 471.9 372 69.9
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 7.9e-131 471.1 371 72.2
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 1.4e-130 470.3 371 72.0
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 2.3e-130 469.5 371 71.4
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 2.3e-130 469.5 373 72.4
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 3.0e-130 469.2 344 76.5
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 5.1e-130 468.4 369 72.1
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 5.1e-130 468.4 374 70.3
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 6.7e-130 468.0 365 72.9
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 8.8e-130 467.6 377 69.2
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 2.0e-129 466.5 373 71.3
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 2.0e-129 466.5 375 69.3
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 2.6e-129 466.1 372 69.9
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 2.2e-128 463.0 375 68.5
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 4.8e-128 461.8 360 72.5
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 8.2e-128 461.1 372 72.0
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 8.2e-128 461.1 325 74.8
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 1.1e-127 460.7 376 68.4
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 1.4e-127 460.3 378 69.8
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 1.4e-127 460.3 374 71.1
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 1.8e-127 459.9 370 71.1
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 7.0e-127 458.0 340 74.7
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 9.1e-127 457.6 361 70.1
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 1.6e-126 456.8 343 74.1
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 2.6e-126 456.1 375 71.2
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 3.5e-126 455.7 326 75.5
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 1.3e-125 453.8 342 72.5
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.7e-125 453.4 358 71.5
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 1.7e-125 453.4 327 75.8
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 2.9e-125 452.6 323 77.1
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 5.0e-125 451.8 292 84.9
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 8.5e-125 451.1 369 68.0
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 1.9e-124 449.9 370 69.7
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 5.5e-124 448.4 352 73.6
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 5.5e-124 448.4 328 74.1
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 9.4e-124 447.6 357 68.9
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 1.2e-123 447.2 322 75.2
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 1.6e-123 446.8 379 67.8
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 2.1e-123 446.4 330 73.6
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 2.7e-123 446.0 375 68.0
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 2.7e-123 446.0 373 68.6
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 2.7e-123 446.0 331 73.1
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 3.6e-123 445.7 348 73.6
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 4.7e-123 445.3 339 72.0
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 4.7e-123 445.3 362 69.6
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 4.7e-123 445.3 322 75.5
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 6.1e-123 444.9 341 72.1
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 6.1e-123 444.9 326 73.6
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 8.0e-123 444.5 366 68.6
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 1.8e-122 443.4 351 70.9
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 2.3e-122 443.0 347 72.0
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 3.0e-122 442.6 338 72.2
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 3.0e-122 442.6 362 69.3
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 3.0e-122 442.6 352 69.6
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 4.0e-122 442.2 369 70.5
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 5.2e-122 441.8 381 67.2
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 5.2e-122 441.8 345 71.6
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 6.7e-122 441.4 366 68.0
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 8.8e-122 441.0 366 68.0
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 1.1e-121 440.7 371 67.4
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 1.5e-121 440.3 367 69.2
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 2.6e-121 439.5 370 66.5
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 4.4e-121 438.7 329 72.9
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 5.7e-121 438.3 321 74.8
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 9.7e-121 437.6 349 65.6
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 9.7e-121 437.6 371 66.0
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 2.2e-120 436.4 353 71.1
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 1.4e-119 433.7 377 67.9
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 4.1e-119 432.2 373 66.2
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 2.9e-117 426.0 370 65.7
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 2.7e-115 419.5 371 66.6
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 2.3e-114 416.4 331 70.4
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 4.0e-114 415.6 367 64.3
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 4.1e-111 405.6 323 70.0
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 5.0e-109 398.7 358 64.2
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 6.8e-106 388.3 377 59.7
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 8.8e-106 387.9 243 88.9
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 2.2e-104 383.3 368 63.0
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 1.1e-103 380.9 329 64.4
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 4.5e-102 375.6 359 60.2
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 1.7e-101 373.6 326 63.2
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 4.9e-96 355.5 345 59.7
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.0e-93 347.8 330 60.6
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 3.9e-93 345.9 247 78.5
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.3e-85 320.9 297 58.6
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 8.6e-85 318.2 335 56.7
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 2.3e-82 310.1 206 76.2
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 2.9e-80 303.1 337 53.7
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.5e-76 290.8 330 54.2
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 2.8e-75 286.6 324 55.6
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.2e-71 273.1 242 59.9
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.6e-54 217.6 208 59.1
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.9e-52 210.7 261 49.0
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 2.3e-45 187.2 143 65.7
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.6e-43 181.0 165 59.4
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 4.9e-40 169.5 130 70.0
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 1.3e-35 154.8 164 58.5
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 1.1e-31 141.7 103 71.8
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 6.1e-30 136.0 78 91.0
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 2.5e-28 130.6 89 70.8
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 6.3e-27 125.9 68 91.2
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 8.2e-27 125.6 130 57.7
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 1.3e-24 118.2 128 51.6
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.3e-24 118.2 110 55.5
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 7.2e-23 112.5 95 63.2
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 1.4e-21 108.2 66 86.4
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 1.3e-19 101.7 79 64.6
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 1.3e-19 101.7 125 49.6
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 6.9e-18 95.9 87 58.6
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 5.0e-16 89.7 282 30.9
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 2.5e-15 87.4 312 31.4
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 2.5e-15 87.4 269 32.0
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 3.0e-13 80.5 63 71.4
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 2.2e-11 74.3 69 65.2
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 6.3e-11 72.8 73 61.6
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.1e-10 72.0 49 69.4
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.8e-10 71.2 49 69.4
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 7.0e-10 69.3 177 35.0
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.6e-09 68.2 50 66.0
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.5e-09 67.0 51 60.8
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 5.9e-09 66.2 67 50.7
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.7e-09 65.9 49 65.3
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 1.7e-08 64.7 44 70.5
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.2e-08 64.3 50 62.0
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 2.2e-08 64.3 59 55.9
BcaB08g35109 Brassica carinata HOM05D004231 ORTHO05D004814 1.1e-07 62.0 43 74.4
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.2e-07 60.5 49 59.2
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.7e-06 56.6 80 50.0
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.7e-06 56.6 80 50.0
Ah.03g140200 Amaranthus hybridus HOM05D004231 ORTHO05D004814 6.1e-06 56.2 67 68.7


User provided reference genes

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