Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 0.0e+00 1516.1 789 100.0
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 0.0e+00 1348.6 792 89.6
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 0.0e+00 1271.1 790 85.7
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 0.0e+00 1259.2 793 86.3
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 0.0e+00 1259.2 793 86.3
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 0.0e+00 1257.3 796 85.3
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 0.0e+00 1256.5 794 84.6
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 0.0e+00 1254.6 795 84.5
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 0.0e+00 1243.8 796 84.4
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 0.0e+00 1242.3 797 84.8
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 0.0e+00 1241.9 797 84.8
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 0.0e+00 1189.9 797 81.9
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 1.1e-254 883.6 802 66.3
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 5.6e-243 844.7 869 59.6
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 3.1e-164 583.2 920 44.3
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 1.7e-162 577.4 914 42.7
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 4.9e-162 575.9 923 42.5
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 8.6e-159 565.1 919 41.8
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 6.2e-157 558.9 888 43.7
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 4.0e-156 556.2 923 42.4
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 1.2e-155 554.7 907 42.1
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 2.0e-155 553.9 923 42.1
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 3.4e-155 553.1 907 41.9
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 3.2e-153 546.6 907 41.8
THA.LOC104819718 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 3.2e-153 546.6 806 49.0
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 1.6e-152 544.3 920 41.8
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 3.5e-152 543.1 919 42.2
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 2.3e-151 540.4 920 40.5
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 5.1e-151 539.3 927 41.4
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 1.9e-150 537.3 858 43.5
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 2.8e-149 533.5 887 41.1
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 1.8e-148 530.8 802 43.5
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 2.3e-148 530.4 915 41.2
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 8.3e-146 521.9 928 40.0
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 1.4e-145 521.2 899 42.4
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 3.5e-144 516.5 913 40.6
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 1.3e-143 514.6 910 40.8
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 3.0e-143 513.5 917 40.1
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 3.3e-142 510.0 922 40.3
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 3.6e-141 506.5 920 40.5
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 2.4e-140 503.8 856 41.7
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 5.2e-140 502.7 918 41.3
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 9.9e-139 498.4 919 41.1
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 1.4e-137 494.6 928 38.7
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 2.4e-137 493.8 922 41.2
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 2.4e-137 493.8 922 41.2
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 3.2e-137 493.4 921 39.2
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 5.4e-137 492.7 921 39.2
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 7.1e-137 492.3 925 39.2
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 1.0e-135 488.4 877 41.3
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 1.7e-135 487.6 919 40.2
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 3.0e-135 486.9 994 38.4
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 5.1e-135 486.1 923 38.7
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 8.7e-135 485.3 856 41.2
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 1.5e-134 484.6 927 38.7
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 2.5e-134 483.8 924 39.6
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 3.3e-134 483.4 883 41.2
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 5.6e-134 482.6 876 39.0
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 1.2e-133 481.5 848 39.3
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 1.6e-133 481.1 832 39.5
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 2.1e-133 480.7 927 38.8
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 8.1e-133 478.8 925 38.4
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 1.8e-132 477.6 902 39.4
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 4.0e-132 476.5 872 40.6
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 1.5e-131 474.6 923 38.7
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 3.4e-131 473.4 921 37.6
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 9.9e-131 471.9 890 40.0
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 2.2e-130 470.7 927 39.2
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 5.4e-129 466.1 920 39.2
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 7.1e-129 465.7 919 36.7
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 7.1e-129 465.7 905 37.5
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 9.3e-129 465.3 900 40.0
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 1.6e-128 464.5 918 36.7
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 3.5e-128 463.4 920 37.1
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 6.0e-128 462.6 920 38.2
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 5.1e-127 459.5 924 37.6
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 3.6e-125 453.4 931 38.5
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 4.8e-125 453.0 912 38.7
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 5.8e-123 446.0 873 39.5
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 6.0e-120 436.0 862 38.1
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 1.0e-119 435.3 971 35.4
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 2.3e-119 434.1 876 36.1
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 3.3e-118 430.3 971 35.2
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 4.3e-118 429.9 923 36.3
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 2.8e-117 427.2 888 37.3
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 2.4e-116 424.1 887 37.4
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 4.0e-116 423.3 909 35.4
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 1.2e-112 411.8 889 36.2
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 4.6e-112 409.8 758 39.2
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 1.0e-111 408.7 899 36.3
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 2.3e-111 407.5 961 36.0
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 3.9e-111 406.8 957 36.2
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.9e-110 404.4 779 37.6
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 5.6e-110 402.9 753 38.1
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 4.8e-109 399.8 985 35.2
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 8.2e-109 399.1 611 44.5
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 8.2e-109 399.1 906 36.6
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 1.1e-108 398.7 890 36.3
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 1.1e-108 398.7 825 37.3
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 1.1e-108 398.7 881 36.8
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 1.4e-108 398.3 831 35.3
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 2.4e-108 397.5 870 37.1
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 3.4e-107 393.7 929 34.3
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 2.9e-106 390.6 816 36.2
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 6.5e-106 389.4 848 37.9
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 1.9e-105 387.9 910 34.2
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 5.5e-105 386.3 840 37.6
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 9.3e-105 385.6 833 35.4
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 4.6e-104 383.3 871 37.0
Thhalv10023126m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 7.9e-104 382.5 234 86.8
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.8e-103 381.3 895 34.5
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 5.1e-103 379.8 895 34.4
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 6.7e-103 379.4 858 36.7
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 1.4e-100 371.7 840 37.0
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 7.7e-99 365.9 993 32.8
Lalb_Chr16g0380031 Lupinus albus HOM05D005001 ORTHO05D005796 1.9e-97 361.3 682 40.6
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 9.7e-86 322.4 891 33.4
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 1.3e-85 322.0 857 34.8
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 1.7e-82 311.6 925 31.2
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 7.0e-76 289.7 812 34.5
Gohir.A07G171200 Gossypium hirsutum HOM05D005001 ORTHO05D005796 7.0e-76 289.7 669 37.1
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 1.0e-74 285.8 854 31.9
Gohir.D07G178000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 3.8e-74 283.9 705 36.3
PSO541G4728 Papaver somniferum HOM05D005001 ORTHO05D005796 2.1e-72 278.1 934 32.0
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 3.0e-71 274.2 793 33.2
Sc03g0003960 Simmondsia chinensis HOM05D005001 ORTHO05D005796 1.9e-57 228.4 646 34.4
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 7.2e-57 226.5 934 28.9
Zm00001eb002440 Zea mays HOM05D005001 ORTHO05D005796 1.2e-51 209.1 947 28.6
Lj4A237T62 Lonicera japonica HOM05D005001 ORTHO05D005796 6.1e-48 196.8 461 34.9
HPP92_007108 Vanilla planifolia HOM05D005001 ORTHO05D005796 1.2e-43 182.6 934 26.4
unitig_37.g12434 Utricularia gibba HOM05D005001 ORTHO05D005796 4.3e-41 174.1 392 30.9
Medtr5g025350 Medicago truncatula HOM05D005001 ORTHO05D005796 4.1e-36 157.5 275 41.1
FAN28G2205 Fragaria x ananassa HOM05D005001 ORTHO05D005796 1.8e-31 142.1 184 41.8
Lalb_Chr16g0380041 Lupinus albus HOM05D005001 ORTHO05D005796 1.1e-28 132.9 216 39.8
unitig_37.g12435 Utricularia gibba HOM05D005001 ORTHO05D005796 1.9e-25 122.1 306 34.6
arahy.Tifrunner.gnm1.ann1.8C07DS Arachis hypogaea HOM05D005001 ORTHO05D005796 8.4e-21 106.7 497 29.2
HPP92_022687 Vanilla planifolia HOM05D005001 ORTHO05D005796 1.0e-18 99.8 402 28.9
Os06g0728200 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 1.9e-17 95.5 915 23.1
Lj4P237T25 Lonicera japonica HOM05D005001 ORTHO05D005796 8.1e-16 90.1 213 32.9
Medtr5g025380 Medicago truncatula HOM05D005001 ORTHO05D005796 2.6e-14 85.1 149 40.3
CDE05G3420 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 6.0e-11 73.9 399 24.6
Dinv23669 Davidia involucrata HOM05D005001 ORTHO05D005796 1.7e-10 72.4 153 34.0
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 2.3e-10 72.0 207 30.9
HPP92_022688 Vanilla planifolia HOM05D005001 ORTHO05D005796 7.3e-09 67.0 358 26.3
SEGI_29651 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 1.1e-07 63.2 200 29.5
Dinv30187 Davidia involucrata HOM05D005001 ORTHO05D005796 1.8e-07 62.4 138 31.9
CDE05G1993 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 5.3e-07 60.8 474 22.8
AagrBONN_evm.TU.Sc2ySwM_228.4044 Anthoceros agrestis HOM05D002515 ORTHO05D005796 2.0e-06 58.9 228 26.8
Dinv03480 Davidia involucrata HOM05D005001 ORTHO05D005796 2.0e-06 58.9 77 44.2


User provided reference genes

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