Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 6.7e-137 490.7 258 100.0
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 4.9e-119 431.4 250 92.0
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 8.0e-114 414.1 258 85.7
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 1.2e-112 410.2 259 84.2
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 4.4e-112 408.3 257 80.9
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 4.4e-112 408.3 257 80.9
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 2.9e-111 405.6 259 79.9
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 6.3e-111 404.4 259 79.5
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 1.4e-110 403.3 252 86.5
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 2.3e-108 396.0 264 81.1
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 5.6e-107 391.3 259 78.4
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 9.5e-107 390.6 257 80.9
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 6.6e-100 367.9 253 77.9
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 2.5e-99 365.9 266 71.1
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 6.4e-87 324.7 223 71.7
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 2.4e-86 322.8 255 66.7
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 2.4e-86 322.8 242 66.1
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 5.4e-86 321.6 242 66.1
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 3.5e-85 318.9 240 66.2
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 3.5e-85 318.9 242 65.3
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 3.5e-85 318.9 249 64.3
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 1.0e-84 317.4 251 64.1
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 3.9e-84 315.5 248 63.7
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 6.6e-84 314.7 265 60.8
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 1.9e-83 313.2 225 67.1
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 2.5e-83 312.8 230 67.4
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 3.6e-82 308.9 221 67.9
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 6.2e-82 308.1 245 63.7
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 8.1e-82 307.8 226 66.4
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 1.4e-81 307.0 237 64.6
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 3.1e-81 305.8 225 67.1
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 4.0e-81 305.4 259 60.6
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 4.0e-81 305.4 224 68.3
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 5.2e-81 305.1 249 62.2
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 6.8e-81 304.7 259 60.6
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 8.9e-81 304.3 225 68.0
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 1.5e-80 303.5 251 61.8
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 2.6e-80 302.8 252 61.5
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 2.2e-79 299.7 225 64.9
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 3.8e-79 298.9 238 63.0
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 3.8e-79 298.9 223 67.7
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 3.8e-79 298.9 211 70.1
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 3.8e-79 298.9 223 65.9
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 4.9e-79 298.5 250 60.8
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 4.9e-79 298.5 223 67.3
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 6.4e-79 298.1 223 64.6
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 1.1e-78 297.4 223 65.9
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 7.1e-78 294.7 220 68.6
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 9.3e-78 294.3 261 59.8
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 1.6e-77 293.5 233 63.5
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 2.1e-77 293.1 245 60.4
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 2.1e-77 293.1 245 61.6
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 2.7e-77 292.7 225 64.4
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 2.7e-77 292.7 240 62.1
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 3.5e-77 292.4 233 63.5
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 4.6e-77 292.0 250 60.0
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 7.8e-77 291.2 263 58.6
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 7.8e-77 291.2 249 60.2
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 1.0e-76 290.8 247 59.9
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.0e-76 290.8 233 63.1
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.0e-76 290.8 228 64.0
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 1.0e-76 290.8 226 66.8
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 1.3e-76 290.4 274 59.1
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 2.3e-76 289.7 228 64.0
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 2.3e-76 289.7 228 68.9
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 3.9e-76 288.9 207 68.1
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 6.6e-76 288.1 226 63.7
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 1.5e-75 287.0 255 56.5
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 1.9e-75 286.6 226 63.3
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 4.3e-75 285.4 223 64.6
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 1.3e-74 283.9 206 67.5
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 1.3e-74 283.9 223 64.1
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 2.1e-74 283.1 267 55.4
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 4.8e-74 282.0 253 57.3
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 8.1e-74 281.2 253 57.3
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 8.1e-74 281.2 259 56.4
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 2.4e-73 279.6 204 68.1
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 3.1e-73 279.3 244 60.7
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 5.3e-73 278.5 223 61.4
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 6.9e-73 278.1 256 56.6
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 2.0e-72 276.6 308 50.3
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 4.4e-72 275.4 257 55.6
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 4.4e-72 275.4 223 63.7
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 1.4e-70 270.4 226 66.4
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 1.4e-70 270.4 277 52.3
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 1.9e-70 270.0 225 61.3
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 2.4e-70 269.6 231 59.3
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 3.2e-70 269.2 227 60.8
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 1.6e-69 266.9 274 52.2
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 2.1e-69 266.5 264 53.4
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 6.0e-69 265.0 251 56.2
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 7.9e-69 264.6 223 56.5
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 1.0e-68 264.2 233 59.2
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 2.3e-68 263.1 231 58.0
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 6.6e-68 261.5 229 59.0
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 1.5e-67 260.4 220 60.5
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 1.5e-67 260.4 220 60.9
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 3.3e-67 259.2 206 63.1
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 4.3e-67 258.8 286 49.0
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 5.6e-67 258.5 229 58.1
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 1.3e-66 257.3 206 61.7
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 2.1e-66 256.5 300 47.3
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 1.2e-64 250.8 160 73.8
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.5e-64 250.4 223 54.3
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 3.5e-61 239.2 184 58.7
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 3.3e-59 232.6 250 49.2
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 1.2e-56 224.2 237 51.1
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 1.0e-55 221.1 250 49.6
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 1.3e-52 210.7 202 51.5
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 3.0e-52 209.5 216 46.8
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 2.1e-50 203.4 224 49.1
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 3.2e-38 162.9 172 45.3
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 5.5e-38 162.2 179 41.9
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 1.7e-34 150.6 147 54.4
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 1.5e-27 127.5 171 34.5
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 1.4e-25 120.9 181 38.7
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 8.8e-20 101.7 116 51.7
Os10g0569000 Oryza sativa ssp. japonica HOM05D006780 ORTHO05D008455 3.8e-15 86.3 115 47.8
Cre12.g551100 Chlamydomonas reinhardtii HOM05D006780 ORTHO05D008455 1.1e-06 58.2 120 32.5


User provided reference genes

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