Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10022151m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 2.1e-39 165.6 110 100.0
A05p35990 Brassica napus HOM05D004137 ORTHO05D004804 7.8e-18 94.0 63 71.4
BraA05t22405Z Brassica rapa HOM05D004137 ORTHO05D004804 7.8e-18 94.0 63 71.4
AL3G25410 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.3e-17 93.2 82 62.2
Carub.0003s1297 Capsella rubella HOM05D004137 ORTHO05D004804 9.6e-16 87.0 87 56.3
AT3G13500 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 1.2e-15 86.7 87 57.5
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 2.8e-15 85.5 92 51.1
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 2.8e-15 85.5 92 51.1
Sp3g11710 Schrenkiella parvula HOM05D004137 ORTHO05D004804 2.8e-15 85.5 57 71.9
CARHR088170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 8.1e-15 84.0 56 69.6
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 2.4e-14 82.4 92 51.1
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 5.2e-14 81.3 60 61.7
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 6.9e-14 80.9 89 49.4
Aa31LG8G700 Aethionema arabicum HOM05D004137 ORTHO05D004804 1.2e-13 80.1 89 56.2
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 2.0e-13 79.3 83 51.8
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 2.6e-13 79.0 89 53.9
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 9.9e-13 77.0 93 50.5
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 9.9e-13 77.0 93 50.5
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 4.9e-12 74.7 88 52.3
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 8.4e-12 73.9 93 51.6
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 7.1e-11 70.9 60 55.0
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 7.1e-11 70.9 60 55.0
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 2.1e-10 69.3 93 47.3
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 2.7e-10 68.9 60 48.3
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 3.5e-10 68.6 60 53.3
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 4.6e-10 68.2 60 56.7
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 4.6e-10 68.2 60 48.3
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 1.0e-09 67.0 60 51.7
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 1.0e-09 67.0 60 51.7
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 2.3e-09 65.9 61 45.9
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 3.9e-09 65.1 60 50.0
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 6.6e-09 64.3 60 48.3
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 8.7e-09 63.9 60 46.7
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 8.7e-09 63.9 60 53.3
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 1.5e-08 63.2 58 48.3
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 1.9e-08 62.8 55 47.3
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 2.5e-08 62.4 60 48.3
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 2.5e-08 62.4 60 48.3
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 3.3e-08 62.0 66 47.0
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 5.6e-08 61.2 57 47.4
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 5.6e-08 61.2 57 47.4
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 7.3e-08 60.8 57 47.4
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 7.3e-08 60.8 60 45.0
BcaB02g10824 Brassica carinata HOM05D004137 ORTHO05D004804 1.3e-07 60.1 56 51.8
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.3e-07 60.1 60 50.0
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.3e-07 60.1 60 50.0
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.3e-07 60.1 60 50.0
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 1.6e-07 59.7 60 50.0
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 1.6e-07 59.7 55 43.6
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 2.1e-07 59.3 57 49.1
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 3.6e-07 58.5 58 46.6
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 3.6e-07 58.5 58 46.6
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 3.6e-07 58.5 60 50.0
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 3.6e-07 58.5 60 48.3
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 4.8e-07 58.2 60 48.3
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 6.2e-07 57.8 66 43.9
Aa31LG10G1170 Aethionema arabicum HOM05D004137 ORTHO05D004804 1.1e-06 57.0 58 51.7
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 1.4e-06 56.6 60 50.0
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 1.8e-06 56.2 58 37.9
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 1.8e-06 56.2 57 40.4
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 1.8e-06 56.2 57 40.4
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.8e-06 56.2 60 41.7
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 1.8e-06 56.2 56 51.8
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 2.4e-06 55.8 58 39.7
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 2.4e-06 55.8 58 39.7
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 2.4e-06 55.8 57 43.9
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 3.1e-06 55.5 58 37.9
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 3.1e-06 55.5 61 45.9
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 3.1e-06 55.5 58 37.9
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 3.1e-06 55.5 58 48.3
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 3.1e-06 55.5 60 48.3
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 5.3e-06 54.7 59 42.4
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 9.0e-06 53.9 58 43.1
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 9.0e-06 53.9 57 43.9


User provided reference genes

Program Settings