Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10022128m.g Eutrema salsugineum HOM05D001652 ORTHO05D013674 5.2e-97 357.8 196 100.0
Thhalv10021631m.g Eutrema salsugineum HOM05D001652 ORTHO05D013674 1.5e-64 250.0 196 78.1
CARHR099120 Cardamine hirsuta HOM05D001652 ORTHO05D013674 4.3e-59 231.9 177 71.2
A07p09320 Brassica napus HOM05D001652 ORTHO05D013674 2.1e-58 229.6 197 70.6
BraA07t28730Z Brassica rapa HOM05D001652 ORTHO05D013674 2.1e-58 229.6 197 70.6
BcaB06g26450 Brassica carinata HOM05D001652 ORTHO05D013674 1.8e-57 226.5 179 69.8
BolC7t41934H Brassica oleracea HOM05D001652 ORTHO05D013674 2.4e-57 226.1 179 69.8
C07p14370 Brassica napus HOM05D001652 ORTHO05D013674 5.2e-57 224.9 179 69.8
Carub.0003s2340 Capsella rubella HOM05D001652 ORTHO05D013674 2.0e-56 223.0 177 67.8
Sp3g20830 Schrenkiella parvula HOM05D001652 ORTHO05D013674 3.8e-55 218.8 197 65.5
BcaB04g20467 Brassica carinata HOM05D001652 ORTHO05D013674 1.4e-54 216.9 179 67.0
AL3G37800 Arabidopsis lyrata HOM05D001652 ORTHO05D013674 5.4e-54 214.9 178 64.6
AT3G23175 Arabidopsis thaliana HOM05D001652 ORTHO05D013674 5.1e-52 208.4 180 63.9
A01p31910 Brassica napus HOM05D001652 ORTHO05D013674 7.3e-51 204.5 198 62.1
BraA01t03317Z Brassica rapa HOM05D001652 ORTHO05D013674 7.3e-51 204.5 198 62.1
Aa31LG8G9670 Aethionema arabicum HOM05D001652 ORTHO05D013674 1.6e-45 186.8 173 57.8
C01p40790 Brassica napus HOM05D001652 ORTHO05D032151 1.6e-26 123.6 180 45.0
BcaC09g49258 Brassica carinata HOM05D001652 ORTHO05D032151 2.5e-19 99.8 180 39.4
BolC1t04037H Brassica oleracea HOM05D001652 ORTHO05D032151 3.2e-14 82.8 49 77.6
ClCG06G006860 Citrullus lanatus HOM05D001652 ORTHO05D001768 3.1e-09 66.2 180 32.8
Gohir.A10G112700 Gossypium hirsutum HOM05D001652 ORTHO05D001768 3.1e-09 66.2 174 31.0
Gorai.011G172100 Gossypium raimondii HOM05D001652 ORTHO05D001768 4.1e-09 65.9 167 32.3
DCAR_002335 Daucus carota HOM05D001652 ORTHO05D001768 6.9e-09 65.1 165 30.9
Duzib052G1234 Durio zibethinus HOM05D001652 ORTHO05D001768 6.9e-09 65.1 167 31.7
Gorai.006G070600 Gossypium raimondii HOM05D001652 ORTHO05D001768 1.2e-08 64.3 167 31.7
Gohir.D09G057000 Gossypium hirsutum HOM05D001652 ORTHO05D001768 2.0e-08 63.5 167 31.1
BcaB06g26451 Brassica carinata HOM05D001652 ORTHO05D090617 3.4e-08 62.8 64 54.7
Prupe.8G226100 Prunus persica HOM05D001652 ORTHO05D001768 3.4e-08 62.8 166 31.9
Gohir.A02G037400 Gossypium hirsutum HOM05D001652 ORTHO05D001768 4.5e-08 62.4 174 30.5
Gohir.D10G154200 Gossypium hirsutum HOM05D001652 ORTHO05D001768 4.5e-08 62.4 167 31.1
QL09p037948 Quercus lobata HOM05D001652 ORTHO05D001768 4.5e-08 62.4 166 31.9
Duzib212G0705 Durio zibethinus HOM05D001652 ORTHO05D001768 5.9e-08 62.0 167 31.7
Gohir.A09G057800 Gossypium hirsutum HOM05D001652 ORTHO05D001768 5.9e-08 62.0 167 31.1
Rhsim02G0035500 Rhododendron simsii HOM05D001652 ORTHO05D001768 7.7e-08 61.6 167 30.5
Duzib151G1161 Durio zibethinus HOM05D001652 ORTHO05D001768 1.0e-07 61.2 167 31.7
HanXRQChr04g0113821 Helianthus annuus HOM05D001652 ORTHO05D001768 2.9e-07 59.7 155 29.7
Peaxi162Scf00024g01815 Petunia axillaris HOM05D001652 ORTHO05D001768 2.9e-07 59.7 174 29.3
Atru.chr4.2131 Acer truncatum HOM05D001652 ORTHO05D001768 3.8e-07 59.3 166 30.1
ECA236G1604 Erigeron canadensis HOM05D001652 ORTHO05D001768 3.8e-07 59.3 158 33.5
Thecc.04G250800 Theobroma cacao HOM05D001652 ORTHO05D001768 3.8e-07 59.3 166 29.5
CiPaw.02G114300 Carya illinoinensis HOM05D001652 ORTHO05D001768 6.5e-07 58.5 166 30.1
Hma1.2p1_0273F.1_g109890 Hydrangea macrophylla HOM05D001652 ORTHO05D001768 6.5e-07 58.5 166 31.3
CiPaw.04G185100 Carya illinoinensis HOM05D001652 ORTHO05D001768 8.5e-07 58.2 174 30.5
MELO3C022977.2 Cucumis melo HOM05D001652 ORTHO05D001768 8.5e-07 58.2 175 31.4
DCAR_030736 Daucus carota HOM05D001652 ORTHO05D001768 1.1e-06 57.8 166 30.1
CsaV3_2G012930 Cucumis sativus L. HOM05D001652 ORTHO05D001768 1.4e-06 57.4 175 31.4
ECA240G1037 Erigeron canadensis HOM05D001652 ORTHO05D001768 1.4e-06 57.4 166 31.9
Lsat_1_v5_gn_5_71300 Lactuca sativa HOM05D001652 ORTHO05D001768 1.4e-06 57.4 165 32.1
Carub.0007s2780 Capsella rubella HOM05D001652 ORTHO05D001768 1.9e-06 57.0 165 30.9
COL.COLO4_15835 Corchorus olitorius HOM05D001652 ORTHO05D001768 1.9e-06 57.0 175 30.9
Lsat_1_v5_gn_8_91261 Lactuca sativa HOM05D001652 ORTHO05D001768 1.9e-06 57.0 165 29.1
Sp7g12490 Schrenkiella parvula HOM05D001652 ORTHO05D001768 1.9e-06 57.0 165 30.3
Sc25g0004010 Simmondsia chinensis HOM05D001652 ORTHO05D001768 1.9e-06 57.0 131 34.4
MSTRG.9912 Avicennia marina HOM05D001652 ORTHO05D001768 2.5e-06 56.6 167 31.1
Cfa008347 Carpinus fangiana HOM05D001652 ORTHO05D001768 2.5e-06 56.6 166 31.3
Thhalv10026456m.g Eutrema salsugineum HOM05D001652 ORTHO05D001768 2.5e-06 56.6 165 30.3
Lj5g0021717 Lotus japonicus HOM05D001652 ORTHO05D001768 2.5e-06 56.6 167 32.3
Ah.13g065670 Amaranthus hybridus HOM05D001652 ORTHO05D001768 3.2e-06 56.2 166 30.7
Cfa002402 Carpinus fangiana HOM05D001652 ORTHO05D001768 3.2e-06 56.2 166 30.7
CiPaw.01G187900 Carya illinoinensis HOM05D001652 ORTHO05D001768 3.2e-06 56.2 166 30.1
Ciclev10006115m.g Citrus clementina HOM05D001652 ORTHO05D001768 3.2e-06 56.2 166 30.1
QL06p016732 Quercus lobata HOM05D001652 ORTHO05D001768 3.2e-06 56.2 174 31.0
Manes.15G038600 Manihot esculenta HOM05D001652 ORTHO05D001768 4.2e-06 55.8 167 31.1
A04p07630 Brassica napus HOM05D001652 ORTHO05D001768 5.5e-06 55.5 162 29.6
Cpa.g.sc50.38 Carica papaya HOM05D001652 ORTHO05D001768 5.5e-06 55.5 175 30.3
Dinv34602 Davidia involucrata HOM05D001652 ORTHO05D001768 5.5e-06 55.5 139 33.1
Hund11872 Selenicereus undatus HOM05D001652 ORTHO05D001768 5.5e-06 55.5 179 30.7
arahy.Tifrunner.gnm1.ann1.FJRL71 Arachis hypogaea HOM05D001652 ORTHO05D001768 7.2e-06 55.1 175 29.1
Sed0025643 Sechium edule HOM05D001652 ORTHO05D001768 7.2e-06 55.1 174 30.5
SGA_v2.0_scaffold101G29839 Striga asiatica HOM05D001652 ORTHO05D001768 7.2e-06 55.1 172 30.2
THA.LOC104822246 Tarenaya hassleriana HOM05D001652 ORTHO05D001768 7.2e-06 55.1 170 29.4
arahy.Tifrunner.gnm1.ann1.664CMB Arachis hypogaea HOM05D001652 ORTHO05D001768 9.4e-06 54.7 176 29.0
Sopen09g032610 Solanum pennellii HOM05D001652 ORTHO05D001768 9.4e-06 54.7 166 27.1
SGA_v2.0_scaffold308G48091 Striga asiatica HOM05D001652 ORTHO05D001768 9.4e-06 54.7 167 30.5


User provided reference genes

Program Settings