Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10021835m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 6.7e-42 173.7 95 100.0
Carub.0003s1318 Capsella rubella HOM05D007491 ORTHO05D009489 2.9e-37 158.3 95 89.5
AT3G13674 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 1.8e-34 149.1 96 85.4
CARHR088390 Cardamine hirsuta HOM05D007491 ORTHO05D009489 2.6e-33 145.2 96 85.4
AT1G55205 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 1.5e-25 119.4 98 69.4
THA.LOC104822629 Tarenaya hassleriana HOM05D007491 ORTHO05D009489 3.7e-24 114.8 100 70.0
AL1G63250 Arabidopsis lyrata HOM05D007491 ORTHO05D009489 6.3e-24 114.0 98 67.3
Thhalv10011893m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 1.4e-23 112.8 90 71.1
Carub.0001s4372 Capsella rubella HOM05D007491 ORTHO05D009489 4.1e-23 111.3 98 65.3
CARHR044840 Cardamine hirsuta HOM05D007491 ORTHO05D009489 1.1e-20 103.2 98 66.3
C06p10160 Brassica napus HOM05D007491 ORTHO05D009489 4.2e-20 101.3 94 66.0
A06p00340 Brassica napus HOM05D007491 ORTHO05D009489 5.5e-20 100.9 94 67.0
BraA06t23249Z Brassica rapa HOM05D007491 ORTHO05D009489 5.5e-20 100.9 94 67.0
Sp1g40890 Schrenkiella parvula HOM05D007491 ORTHO05D009489 9.4e-20 100.1 99 67.7
BolC6t36089H Brassica oleracea HOM05D000490 ORTHO05D000785 1.0e-18 96.7 84 67.9
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 4.0e-18 94.7 102 62.7
MD02G1043400 Malus domestica HOM05D007491 ORTHO05D009489 6.8e-18 94.0 97 56.7
MD15G1182000 Malus domestica HOM05D007491 ORTHO05D009489 9.8e-17 90.1 98 60.2
BcaC01g01475 Brassica carinata HOM05D007491 ORTHO05D009489 1.3e-16 89.7 96 61.5
C03p92400 Brassica napus HOM05D007491 ORTHO05D009489 1.3e-16 89.7 96 61.5
CANSAT78G0421 Cannabis sativa HOM05D007491 ORTHO05D009489 1.3e-16 89.7 95 57.9
BolC3t21548H Brassica oleracea HOM05D007491 ORTHO05D009489 1.7e-16 89.4 96 61.5
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 2.8e-16 88.6 99 59.6
BcaB04g16984 Brassica carinata HOM05D007491 ORTHO05D009489 3.7e-16 88.2 91 59.3
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 3.7e-16 88.2 98 59.2
A08p00850 Brassica napus HOM05D007491 ORTHO05D009489 8.3e-16 87.0 96 60.4
BraA08t32143Z Brassica rapa HOM05D007491 ORTHO05D009489 8.3e-16 87.0 96 60.4
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 1.1e-15 86.7 99 56.6
Potri.018G082800 Populus trichocarpa HOM05D007491 ORTHO05D009489 1.1e-15 86.7 105 52.4
Sed0025893 Sechium edule HOM05D007491 ORTHO05D009489 1.1e-15 86.7 103 56.3
TWI63G0394 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 1.1e-15 86.7 103 58.3
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 3.1e-15 85.1 101 57.4
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 4.1e-15 84.7 97 56.7
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 7.0e-15 84.0 98 57.1
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 2.7e-14 82.0 96 55.2
Rhsim01G0100500 Rhododendron simsii HOM05D007491 ORTHO05D009489 2.7e-14 82.0 95 57.9
CsaV3_2G002190 Cucumis sativus L. HOM05D007491 ORTHO05D009489 3.5e-14 81.6 100 52.0
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 3.5e-14 81.6 101 53.5
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 3.5e-14 81.6 98 55.1
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 5.9e-14 80.9 101 58.4
Phvul.002G312200 Phaseolus vulgaris HOM05D007491 ORTHO05D009489 5.9e-14 80.9 99 56.6
Oeu013426.2 Olea europaea HOM05D007491 ORTHO05D009489 7.7e-14 80.5 92 56.5
TWI34G1809 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 7.7e-14 80.5 103 55.3
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 1.0e-13 80.1 98 54.1
Lalb_Chr05g0222981 Lupinus albus HOM05D007491 ORTHO05D009489 1.0e-13 80.1 97 57.7
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 1.7e-13 79.3 103 57.3
GSVIVG01035656001 Vitis vinifera HOM05D007491 ORTHO05D009489 1.7e-13 79.3 101 52.5
Sed0000101 Sechium edule HOM05D007491 ORTHO05D009489 2.3e-13 79.0 102 53.9
TAR383G0584 Trochodendron aralioides HOM05D007491 ORTHO05D009489 2.3e-13 79.0 95 54.7
Haze_25768 Corylus avellana HOM05D007491 ORTHO05D009489 2.9e-13 78.6 98 54.1
Dinv41621 Davidia involucrata HOM05D007491 ORTHO05D009489 3.8e-13 78.2 95 53.7
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 5.0e-13 77.8 99 54.5
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 6.5e-13 77.4 106 53.8
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 6.5e-13 77.4 106 53.8
Duzib150G1582 Durio zibethinus HOM05D007491 ORTHO05D009489 8.6e-13 77.0 103 56.3
TPR.G23496 Trifolium pratense HOM05D007491 ORTHO05D009489 1.5e-12 76.3 94 53.2
ClCG11G002390 Citrullus lanatus HOM05D007491 ORTHO05D009489 4.2e-12 74.7 96 56.2
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 4.2e-12 74.7 98 51.0
ECA234G1405 Erigeron canadensis HOM05D007491 ORTHO05D009489 9.5e-12 73.6 93 57.0
Lj4g0004733 Lotus japonicus HOM05D007491 ORTHO05D009489 9.5e-12 73.6 59 72.9
TWI32G0642 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 9.5e-12 73.6 102 50.0
Gohir.A07G005300 Gossypium hirsutum HOM05D007491 ORTHO05D009489 1.2e-11 73.2 94 51.1
Cfa003238 Carpinus fangiana HOM05D007491 ORTHO05D009489 1.6e-11 72.8 99 51.5
Ciclev10010011m.g Citrus clementina HOM05D007491 ORTHO05D009489 1.6e-11 72.8 103 55.3
Hma1.2p1_1463F.1_g285180 Hydrangea macrophylla HOM05D007491 ORTHO05D009489 1.6e-11 72.8 88 55.7
Psat7g015280 Pisum sativum HOM05D007491 ORTHO05D009489 1.6e-11 72.8 95 53.7
Lj2g0023927 Lotus japonicus HOM05D007491 ORTHO05D009489 2.1e-11 72.4 98 53.1
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 2.1e-11 72.4 96 56.2
HanXRQChr12g0355021 Helianthus annuus HOM05D007491 ORTHO05D009489 2.8e-11 72.0 87 54.0
PSO782G0237 Papaver somniferum HOM05D007491 ORTHO05D009489 2.8e-11 72.0 105 53.3
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 3.6e-11 71.6 86 57.0
Gohir.D07G006700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 3.6e-11 71.6 94 50.0
Duzib187G0523 Durio zibethinus HOM05D007491 ORTHO05D009489 4.7e-11 71.2 102 51.0
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 4.7e-11 71.2 102 51.0
Sabra18G0070600 Salix brachista HOM05D007491 ORTHO05D009489 6.1e-11 70.9 97 49.5
VMungo0251G1641 Vigna mungo HOM05D007491 ORTHO05D009489 8.0e-11 70.5 92 51.1
Manes.03G022800 Manihot esculenta HOM05D007491 ORTHO05D009489 1.4e-10 69.7 94 52.1
Dinv36653 Davidia involucrata HOM05D007491 ORTHO05D009489 1.8e-10 69.3 89 52.8
Gohir.A06G094700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 1.8e-10 69.3 113 47.8
PSO566G0269 Papaver somniferum HOM05D007491 ORTHO05D009489 1.8e-10 69.3 96 54.2
MELO3C004564.2 Cucumis melo HOM05D007491 ORTHO05D009489 3.0e-10 68.6 93 48.4
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 4.0e-10 68.2 94 55.3
Lsat_1_v5_gn_5_103040 Lactuca sativa HOM05D007491 ORTHO05D009489 5.2e-10 67.8 103 46.6
FAN26G2745 Fragaria x ananassa HOM05D001691 ORTHO05D001704 1.5e-09 66.2 91 49.5
CDE05G2495 Ceratophyllum demersum HOM05D001777 ORTHO05D001809 2.0e-09 65.9 70 55.7
CDE05G0808 Ceratophyllum demersum HOM05D007491 ORTHO05D009489 2.6e-09 65.5 70 55.7
Lsat_1_v5_gn_5_33441 Lactuca sativa HOM05D007491 ORTHO05D009489 2.6e-09 65.5 80 53.8
Medtr8g103300 Medicago truncatula HOM05D007491 ORTHO05D009489 2.6e-09 65.5 90 50.0
HanXRQChr10g0318621 Helianthus annuus HOM05D007491 ORTHO05D009489 1.7e-08 62.8 98 49.0
Nn3g18087 Nelumbo nucifera HOM05D007491 ORTHO05D009489 2.8e-08 62.0 94 47.9
AUR62009312 Chenopodium quinoa HOM05D007491 ORTHO05D009489 3.7e-08 61.6 96 45.8
Peaxi162Scf00231g00326 Petunia axillaris HOM05D007491 ORTHO05D009489 3.7e-08 61.6 95 51.6
arahy.Tifrunner.gnm1.ann1.KI7M62 Arachis hypogaea HOM05D007491 ORTHO05D009489 6.3e-08 60.8 89 51.7
MBI01_g30748_MAGBIO Magnolia biondii HOM05D007491 ORTHO05D009489 1.8e-07 59.3 71 56.3
arahy.Tifrunner.gnm1.ann1.RT52KZ Arachis hypogaea HOM05D007491 ORTHO05D009489 3.1e-07 58.5 84 52.4
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 5.4e-07 57.8 52 63.5
Os06g0332500 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 2.0e-06 55.8 64 54.7
Gorai.001G006300 Gossypium raimondii HOM05D007491 ORTHO05D009489 4.5e-06 54.7 94 47.9
Ah.16g106040 Amaranthus hybridus HOM05D007491 ORTHO05D009489 5.9e-06 54.3 53 60.4


User provided reference genes

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