Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 2.1e-58 228.8 113 100.0
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 3.8e-52 208.0 112 92.0
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 2.7e-50 201.8 112 89.3
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 2.7e-50 201.8 113 90.3
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 1.8e-49 199.1 112 88.4
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 6.7e-49 197.2 112 86.6
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.7e-44 182.6 92 98.9
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 1.8e-41 172.6 113 76.1
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 2.3e-41 172.2 112 79.5
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 2.3e-41 172.2 113 77.0
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 4.4e-40 167.9 112 74.1
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 7.5e-40 167.2 112 75.0
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 7.5e-40 167.2 112 75.0
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 9.8e-40 166.8 112 75.0
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 9.8e-40 166.8 112 75.0
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 9.8e-40 166.8 112 75.0
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 9.8e-40 166.8 112 74.1
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 3.7e-39 164.9 112 71.4
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 6.3e-39 164.1 112 72.3
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 6.3e-39 164.1 112 74.1
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 5.4e-38 161.0 113 74.3
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.6e-37 159.5 113 72.6
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 3.5e-37 158.3 98 79.6
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 4.5e-37 157.9 112 72.3
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 7.7e-37 157.1 112 69.6
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 2.3e-33 145.6 89 76.4
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 9.8e-32 140.2 118 61.9
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 2.8e-31 138.7 88 73.9
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 4.9e-31 137.9 111 64.0
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 4.9e-31 137.9 114 63.2
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 4.9e-31 137.9 111 60.4
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 8.3e-31 137.1 111 60.4
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 1.1e-30 136.7 112 61.6
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 1.1e-30 136.7 113 61.1
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 1.1e-30 136.7 112 61.6
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.1e-30 136.7 110 60.0
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 1.1e-30 136.7 113 59.3
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 1.8e-30 136.0 114 61.4
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 2.4e-30 135.6 86 75.6
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.4e-30 135.6 114 62.3
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 3.1e-30 135.2 113 59.3
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 3.1e-30 135.2 111 59.5
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 4.1e-30 134.8 112 58.0
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.1e-30 134.8 112 62.5
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 5.4e-30 134.4 113 59.3
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 7.0e-30 134.0 112 58.0
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 7.0e-30 134.0 104 63.5
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 7.0e-30 134.0 112 60.7
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 7.0e-30 134.0 112 59.8
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 9.2e-30 133.7 112 58.0
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 9.2e-30 133.7 112 60.7
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 9.2e-30 133.7 112 58.0
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 9.2e-30 133.7 112 61.6
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 9.2e-30 133.7 98 63.3
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 9.2e-30 133.7 112 58.0
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 1.2e-29 133.3 89 68.5
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.2e-29 133.3 112 61.6
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 1.6e-29 132.9 110 59.1
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 1.6e-29 132.9 113 61.9
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.6e-29 132.9 112 58.0
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 1.6e-29 132.9 112 60.7
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 1.6e-29 132.9 112 56.2
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.0e-29 132.5 112 61.6
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 2.0e-29 132.5 89 67.4
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 2.0e-29 132.5 89 67.4
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 2.0e-29 132.5 89 67.4
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 2.0e-29 132.5 113 58.4
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 2.0e-29 132.5 112 57.1
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 2.7e-29 132.1 112 59.8
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 2.7e-29 132.1 88 70.5
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.7e-29 132.1 112 60.7
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 2.7e-29 132.1 109 62.4
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 3.5e-29 131.7 112 58.0
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 3.5e-29 131.7 88 68.2
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 3.5e-29 131.7 118 60.2
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 5.9e-29 131.0 113 56.6
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 7.8e-29 130.6 112 58.0
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 7.8e-29 130.6 87 73.6
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.0e-28 130.2 87 70.1
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 1.3e-28 129.8 113 58.4
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 1.3e-28 129.8 111 58.6
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.3e-28 129.8 113 58.4
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 1.7e-28 129.4 86 69.8
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 1.7e-28 129.4 86 69.8
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 1.7e-28 129.4 86 69.8
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 1.7e-28 129.4 87 73.6
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 1.7e-28 129.4 113 59.3
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.3e-28 129.0 113 57.5
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 3.8e-28 128.3 108 60.2
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 3.8e-28 128.3 89 67.4
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 6.6e-28 127.5 84 71.4
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 6.6e-28 127.5 113 58.4
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 8.6e-28 127.1 108 55.6
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 1.1e-27 126.7 114 59.6
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 1.1e-27 126.7 92 67.4
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 1.1e-27 126.7 109 57.8
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 1.5e-27 126.3 114 54.4
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 2.5e-27 125.6 89 65.2
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 3.3e-27 125.2 114 58.8
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 3.3e-27 125.2 113 54.9
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 4.3e-27 124.8 86 68.6
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 5.6e-27 124.4 107 57.0
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 7.3e-27 124.0 98 64.3
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 9.5e-27 123.6 93 64.5
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.2e-26 123.2 109 58.7
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 1.2e-26 123.2 100 58.0
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.2e-26 123.2 86 68.6
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.6e-26 122.9 87 65.5
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 2.8e-26 122.1 90 65.6
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.6e-26 121.7 86 66.3
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 8.0e-26 120.6 75 74.7
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 1.4e-25 119.8 86 66.3
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.8e-25 119.4 87 66.7
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 3.0e-25 118.6 110 58.2
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 4.0e-25 118.2 111 54.1
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 5.2e-25 117.9 79 70.9
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 8.9e-25 117.1 86 66.3
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.6e-24 115.5 141 47.5
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 2.2e-23 112.5 154 42.9
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 3.7e-23 111.7 112 50.0
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 8.3e-23 110.5 116 52.6
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.1e-22 110.2 134 44.8
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 4.1e-22 108.2 108 52.8
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 5.4e-22 107.8 111 55.0
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 9.2e-22 107.1 84 64.3
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 2.3e-20 102.4 88 59.1
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 3.9e-20 101.7 110 50.9
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 5.0e-20 101.3 86 59.3
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 6.6e-20 100.9 116 48.3
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.1e-19 100.1 85 60.0
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.5e-19 99.8 113 52.2
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 1.9e-19 99.4 72 63.9
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 2.5e-19 99.0 85 61.2
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.5e-19 99.0 85 63.5
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 2.5e-19 99.0 84 58.3
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 7.3e-19 97.4 70 71.4
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 7.3e-19 97.4 105 53.3
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 1.2e-18 96.7 86 58.1
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 4.0e-17 91.7 65 67.7
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 2.6e-16 89.0 74 63.5
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 2.6e-16 89.0 83 57.8
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 4.4e-16 88.2 72 63.9
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 4.4e-16 88.2 72 63.9
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 4.4e-16 88.2 70 60.0
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.9e-14 82.8 60 65.0
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 2.4e-14 82.4 60 68.3
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 2.7e-13 79.0 48 77.1
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 1.7e-12 76.3 74 47.3
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 3.9e-12 75.1 49 73.5
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 6.6e-12 74.3 103 39.8
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.9e-11 72.8 60 60.0
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 9.5e-11 70.5 69 50.7
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 3.6e-10 68.6 56 55.4
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 4.7e-10 68.2 63 52.4
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 3.1e-09 65.5 62 56.5
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 8.9e-09 63.9 72 50.0
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 1.2e-08 63.5 52 59.6
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.5e-08 63.2 46 63.0
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 2.9e-07 58.9 68 41.2
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 4.9e-07 58.2 91 37.4
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 1.9e-06 56.2 65 43.1
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 7.1e-06 54.3 49 59.2


User provided reference genes

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