Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.4e-90 335.5 172 100.0
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 9.9e-44 180.6 107 86.9
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 1.3e-43 180.3 177 61.6
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 8.4e-43 177.6 107 86.9
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 7.1e-42 174.5 107 86.0
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 2.3e-40 169.5 109 83.5
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 5.1e-40 168.3 109 82.6
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 4.3e-39 165.2 105 81.0
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 4.0e-37 158.7 99 81.8
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 9.0e-37 157.5 108 83.3
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.2e-36 157.1 103 82.5
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 7.1e-34 147.9 109 78.9
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 2.7e-33 146.0 114 78.1
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 2.5e-23 112.8 109 60.6
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 8.2e-22 107.8 112 54.5
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.8e-21 106.7 110 57.3
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.8e-21 106.7 97 60.8
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.6e-20 102.8 97 60.8
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.3e-19 100.5 94 59.6
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 6.5e-19 98.2 111 51.4
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 8.5e-19 97.8 109 54.1
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.9e-18 96.7 108 50.9
BcaC01g03387 Brassica carinata HOM05D037847 ORTHO05D032416 2.7e-17 92.8 101 57.4
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 2.7e-17 92.8 106 54.7
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 3.6e-17 92.4 97 57.7
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 3.6e-17 92.4 94 58.5
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 1.8e-16 90.1 112 49.1
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 1.8e-16 90.1 114 51.8
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 2.3e-16 89.7 109 49.5
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 2.3e-16 89.7 91 57.1
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 3.9e-16 89.0 100 53.0
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 5.1e-16 88.6 109 47.7
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 5.1e-16 88.6 109 47.7
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 5.1e-16 88.6 109 47.7
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 5.1e-16 88.6 109 48.6
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 5.1e-16 88.6 114 51.8
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 5.1e-16 88.6 91 57.1
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 6.7e-16 88.2 91 54.9
C03p53040 Brassica napus HOM05D037847 ORTHO05D032416 8.8e-16 87.8 78 62.8
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 8.8e-16 87.8 115 49.6
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 8.8e-16 87.8 115 49.6
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.0e-15 86.7 117 51.3
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 2.6e-15 86.3 100 56.0
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 2.6e-15 86.3 96 56.2
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 4.4e-15 85.5 114 50.0
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 4.4e-15 85.5 114 48.2
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 4.4e-15 85.5 117 51.3
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 5.7e-15 85.1 97 57.7
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.7e-15 85.1 117 51.3
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 7.4e-15 84.7 98 52.0
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 7.4e-15 84.7 121 47.1
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.3e-14 84.0 111 47.7
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 1.3e-14 84.0 98 52.0
BolC3t17568H Brassica oleracea HOM05D037847 ORTHO05D032416 1.7e-14 83.6 78 61.5
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.2e-14 83.2 104 50.0
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 2.8e-14 82.8 96 53.1
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 2.8e-14 82.8 115 49.6
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 4.8e-14 82.0 118 46.6
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 6.3e-14 81.6 104 53.8
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 8.2e-14 81.3 118 50.0
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 8.2e-14 81.3 126 46.0
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 8.2e-14 81.3 126 46.0
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 8.2e-14 81.3 108 50.0
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 1.4e-13 80.5 105 46.7
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.4e-13 80.5 98 50.0
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.4e-13 80.5 113 49.6
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.8e-13 80.1 114 46.5
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 2.4e-13 79.7 100 52.0
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.4e-13 79.7 103 54.4
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 3.1e-13 79.3 103 47.6
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 3.1e-13 79.3 108 50.9
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.1e-13 79.0 115 47.8
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 4.1e-13 79.0 114 45.6
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 5.3e-13 78.6 98 52.0
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 5.3e-13 78.6 88 51.1
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 5.3e-13 78.6 102 52.9
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 6.9e-13 78.2 112 46.4
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 6.9e-13 78.2 107 45.8
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 9.1e-13 77.8 90 53.3
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 9.1e-13 77.8 102 47.1
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 9.1e-13 77.8 87 52.9
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.2e-12 77.4 111 45.0
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.2e-12 77.4 102 48.0
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 1.2e-12 77.4 89 55.1
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 1.2e-12 77.4 100 53.0
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.5e-12 77.0 122 44.3
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.0e-12 76.6 90 52.2
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 2.0e-12 76.6 92 56.5
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.0e-12 76.6 98 48.0
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 2.0e-12 76.6 102 48.0
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 2.0e-12 76.6 114 45.6
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 3.4e-12 75.9 97 47.4
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 3.4e-12 75.9 83 53.0
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 3.4e-12 75.9 103 48.5
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 3.4e-12 75.9 103 48.5
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 4.5e-12 75.5 109 49.5
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 5.9e-12 75.1 97 46.4
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 5.9e-12 75.1 93 52.7
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 5.9e-12 75.1 103 48.5
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 7.7e-12 74.7 93 53.8
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 1.0e-11 74.3 88 48.9
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 1.3e-11 73.9 87 50.6
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 1.3e-11 73.9 87 50.6
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 1.3e-11 73.9 87 50.6
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.3e-11 73.9 87 49.4
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 1.7e-11 73.6 82 51.2
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 1.7e-11 73.6 82 51.2
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 1.7e-11 73.6 94 46.8
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 1.7e-11 73.6 106 46.2
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 2.2e-11 73.2 107 45.8
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 2.2e-11 73.2 97 50.5
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.2e-11 73.2 91 52.7
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 2.2e-11 73.2 108 49.1
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 2.9e-11 72.8 87 49.4
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 2.9e-11 72.8 106 44.3
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 2.9e-11 72.8 96 46.9
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 2.9e-11 72.8 104 43.3
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.9e-11 72.8 116 45.7
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 3.8e-11 72.4 89 52.8
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 5.0e-11 72.0 87 49.4
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 5.0e-11 72.0 95 46.3
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 6.5e-11 71.6 101 46.5
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 6.5e-11 71.6 95 52.6
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 8.5e-11 71.2 96 45.8
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 8.5e-11 71.2 89 48.3
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 1.1e-10 70.9 93 48.4
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 1.1e-10 70.9 93 48.4
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 1.1e-10 70.9 97 44.3
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 1.4e-10 70.5 92 48.9
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 1.9e-10 70.1 86 52.3
Aa31LG9G2850 Aethionema arabicum HOM05D003940 ORTHO05D004461 1.9e-10 70.1 90 50.0
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 1.9e-10 70.1 110 42.7
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 3.2e-10 69.3 86 50.0
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 3.2e-10 69.3 87 51.7
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 3.2e-10 69.3 93 49.5
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 3.2e-10 69.3 98 46.9
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 4.2e-10 68.9 91 47.3
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 4.2e-10 68.9 106 45.3
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 5.5e-10 68.6 85 52.9
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 7.2e-10 68.2 99 49.5
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 1.2e-09 67.4 95 48.4
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 1.6e-09 67.0 95 45.3
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 2.1e-09 66.6 114 42.1
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 2.7e-09 66.2 85 51.8
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 2.7e-09 66.2 97 43.3
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.7e-09 66.2 84 52.4
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 3.6e-09 65.9 88 52.3
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 4.7e-09 65.5 91 49.5
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 4.7e-09 65.5 99 40.4
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 6.1e-09 65.1 99 49.5
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 8.0e-09 64.7 116 43.1
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 8.0e-09 64.7 93 50.5
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 8.0e-09 64.7 98 45.9
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.0e-08 64.3 93 50.5
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 1.4e-08 63.9 101 43.6
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 1.8e-08 63.5 96 42.7
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 2.3e-08 63.2 112 39.3
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 3.0e-08 62.8 95 49.5
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 8.8e-08 61.2 117 37.6
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 1.1e-07 60.8 97 44.3
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.1e-07 60.8 94 44.7
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 1.5e-07 60.5 109 42.2
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 1.5e-07 60.5 96 43.8
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 3.3e-07 59.3 92 45.7
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.4e-07 58.9 96 45.8
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 4.4e-07 58.9 90 46.7
FAN26G1611 Fragaria x ananassa HOM05D003940 ORTHO05D004461 5.7e-07 58.5 83 45.8
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 9.7e-07 57.8 92 45.7
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 1.7e-06 57.0 89 42.7
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 2.8e-06 56.2 90 50.0
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 2.8e-06 56.2 89 48.3
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 3.7e-06 55.8 106 36.8
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 4.8e-06 55.5 100 43.0
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 6.3e-06 55.1 88 43.2


User provided reference genes

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