Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 8.8e-82 307.0 165 100.0
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 1.6e-59 233.0 164 79.9
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 1.3e-45 186.8 167 68.3
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 3.8e-40 168.7 172 61.6
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 2.5e-36 156.0 154 61.7
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 9.6e-36 154.1 171 58.5
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 6.2e-35 151.4 169 60.9
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 1.1e-34 150.6 167 58.1
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 2.4e-34 149.4 168 57.1
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 8.4e-32 141.0 125 67.2
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 7.1e-31 137.9 161 59.0
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 1.4e-26 123.6 125 60.8
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 2.4e-26 122.9 137 57.7
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 1.4e-23 113.6 139 51.8
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 7.9e-22 107.8 167 48.5
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 7.9e-22 107.8 144 50.0
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 1.3e-21 107.1 157 46.5
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 8.7e-21 104.4 83 72.3
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 1.5e-20 103.6 134 49.3
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 3.3e-20 102.4 159 47.2
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 9.6e-20 100.9 170 42.9
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 1.6e-19 100.1 88 68.2
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 4.8e-19 98.6 149 47.0
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 8.1e-19 97.8 162 42.6
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 1.1e-18 97.4 127 48.8
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 1.4e-18 97.1 111 57.7
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.4e-18 97.1 138 49.3
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 1.8e-18 96.7 134 44.8
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 2.4e-18 96.3 141 45.4
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 3.1e-18 95.9 168 46.4
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 4.0e-18 95.5 167 43.1
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 5.3e-18 95.1 128 46.1
A07p17600 Brassica napus HOM05D003513 ORTHO05D013524 9.0e-18 94.4 123 53.7
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 9.0e-18 94.4 142 47.2
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 9.0e-18 94.4 111 56.8
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 9.0e-18 94.4 160 45.0
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 1.2e-17 94.0 135 52.6
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 1.2e-17 94.0 135 52.6
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 1.2e-17 94.0 159 42.8
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 1.5e-17 93.6 154 46.1
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 2.0e-17 93.2 157 44.6
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 2.0e-17 93.2 155 47.1
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 3.4e-17 92.4 155 41.3
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 4.5e-17 92.0 130 45.4
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 5.8e-17 91.7 138 47.1
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 7.6e-17 91.3 176 40.3
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 9.9e-17 90.9 161 47.2
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 9.9e-17 90.9 147 42.9
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 1.7e-16 90.1 133 47.4
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 1.7e-16 90.1 141 43.3
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 1.7e-16 90.1 141 42.6
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 1.7e-16 90.1 141 42.6
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.7e-16 90.1 153 37.9
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 1.7e-16 90.1 156 41.0
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 2.2e-16 89.7 151 45.7
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 2.2e-16 89.7 139 47.5
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 2.2e-16 89.7 157 41.4
A03p63010 Brassica napus HOM05D003513 ORTHO05D013524 2.9e-16 89.4 123 51.2
C07p28040 Brassica napus HOM05D003513 ORTHO05D013524 2.9e-16 89.4 123 51.2
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 2.9e-16 89.4 169 41.4
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 2.9e-16 89.4 139 48.2
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.9e-16 89.4 158 39.2
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.9e-16 89.4 156 38.5
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 2.9e-16 89.4 141 44.7
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 4.9e-16 88.6 154 44.2
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 4.9e-16 88.6 154 44.2
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 4.9e-16 88.6 132 45.5
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 4.9e-16 88.6 151 47.0
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 4.9e-16 88.6 155 38.7
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 4.9e-16 88.6 162 39.5
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 4.9e-16 88.6 129 44.2
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 6.4e-16 88.2 156 37.8
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 6.4e-16 88.2 176 39.2
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 6.4e-16 88.2 176 39.8
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 8.4e-16 87.8 134 44.8
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 1.1e-15 87.4 133 42.9
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 1.1e-15 87.4 165 38.2
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 1.9e-15 86.7 125 46.4
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 1.9e-15 86.7 141 44.7
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 1.9e-15 86.7 164 39.6
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 5.5e-15 85.1 141 43.3
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 5.5e-15 85.1 130 43.8
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 7.1e-15 84.7 160 41.9
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 9.3e-15 84.3 125 52.8
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 9.3e-15 84.3 172 39.5
A04p12810 Brassica napus HOM05D003513 ORTHO05D013524 2.7e-14 82.8 93 54.8
A06p18750 Brassica napus HOM05D003513 ORTHO05D013524 2.7e-14 82.8 93 54.8
BraA04t16944Z Brassica rapa HOM05D003513 ORTHO05D013524 2.7e-14 82.8 93 54.8
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 2.7e-14 82.8 162 38.3
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 3.5e-14 82.4 120 46.7
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 4.6e-14 82.0 199 36.2
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 6.0e-14 81.6 173 41.0
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 6.0e-14 81.6 179 38.5
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 6.0e-14 81.6 158 42.4
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 6.0e-14 81.6 170 35.9
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 7.9e-14 81.3 147 42.9
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 1.0e-13 80.9 141 41.1
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 1.0e-13 80.9 142 46.5
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 1.0e-13 80.9 114 50.9
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 1.0e-13 80.9 166 37.3
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 1.0e-13 80.9 158 38.6
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 1.3e-13 80.5 112 50.9
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 1.3e-13 80.5 144 47.9
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 1.3e-13 80.5 144 42.4
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 1.8e-13 80.1 114 50.9
A06p48950 Brassica napus HOM05D003513 ORTHO05D013524 1.8e-13 80.1 93 53.8
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 2.3e-13 79.7 154 38.3
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 2.3e-13 79.7 142 40.1
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 5.1e-13 78.6 165 40.6
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 5.1e-13 78.6 163 41.1
BcaC09g52177 Brassica carinata HOM05D003513 ORTHO05D004660 8.7e-13 77.8 125 41.6
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.1e-12 77.4 130 46.2
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 1.1e-12 77.4 135 44.4
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 1.1e-12 77.4 138 42.8
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 1.5e-12 77.0 159 37.1
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 1.5e-12 77.0 174 37.9
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 1.5e-12 77.0 142 38.0
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 1.5e-12 77.0 164 38.4
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 3.3e-12 75.9 161 36.6
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 5.6e-12 75.1 176 36.9
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 7.4e-12 74.7 162 37.7
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 1.3e-11 73.9 136 41.2
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 1.6e-11 73.6 193 34.7
BcaB02g08136 Brassica carinata HOM05D003513 ORTHO05D004660 2.1e-11 73.2 48 77.1
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 2.1e-11 73.2 173 35.8
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 2.1e-11 73.2 134 40.3
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 2.8e-11 72.8 160 36.9
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 2.8e-11 72.8 171 36.3
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 2.8e-11 72.8 165 38.2
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 3.7e-11 72.4 129 44.2
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 4.8e-11 72.0 193 34.7
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 6.2e-11 71.6 174 37.9
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 8.1e-11 71.2 119 42.9
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 1.8e-10 70.1 179 36.3
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 1.8e-10 70.1 193 34.2
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 1.8e-10 70.1 174 33.3
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 3.1e-10 69.3 168 35.1
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 3.1e-10 69.3 171 33.3
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 4.0e-10 68.9 149 37.6
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 5.3e-10 68.6 157 38.9
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 3.4e-09 65.9 97 43.3
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 4.5e-09 65.5 131 38.2
BraA05t21193Z Brassica rapa HOM05D003513 ORTHO05D004660 5.8e-09 65.1 76 57.9
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 7.6e-09 64.7 144 37.5
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 1.3e-08 63.9 163 36.2
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 4.9e-08 62.0 207 33.3
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 8.4e-08 61.2 38 76.3
A05p38730 Brassica napus HOM05D000051 ORTHO05D033618 8.4e-08 61.2 41 70.7
A08p11950 Brassica napus HOM05D003513 ORTHO05D004660 7.1e-07 58.2 77 49.4
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 7.1e-07 58.2 137 35.0
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 7.1e-07 58.2 197 33.5
C06p18700 Brassica napus HOM05D003513 ORTHO05D013524 9.3e-07 57.8 33 75.8
BraA09t39125Z Brassica rapa HOM05D003513 ORTHO05D013524 9.3e-07 57.8 33 75.8
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 1.6e-06 57.0 171 35.7
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 2.1e-06 56.6 103 41.7
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 2.7e-06 56.2 210 30.5
BraA07t29479Z Brassica rapa HOM05D003513 ORTHO05D013524 3.5e-06 55.8 33 72.7
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 4.6e-06 55.5 170 30.6
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 7.9e-06 54.7 131 37.4


User provided reference genes

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