Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 3.4e-140 501.9 304 100.0
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 2.2e-118 429.5 306 87.9
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 2.3e-112 409.5 304 80.3
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 2.2e-110 402.9 306 80.4
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 2.4e-109 399.4 307 80.1
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 3.3e-106 389.0 307 79.8
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 1.5e-103 380.2 311 81.0
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 7.5e-103 377.9 300 79.7
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 1.5e-98 363.6 307 76.2
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 2.5e-98 362.8 303 77.2
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 2.8e-97 359.4 304 76.0
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 1.4e-93 347.1 307 74.3
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 1.3e-91 340.5 318 72.6
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 2.3e-91 339.7 276 79.3
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 5.0e-91 338.6 309 71.2
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 2.3e-88 329.7 317 75.4
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 8.3e-86 321.2 311 67.2
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 9.2e-85 317.8 314 63.7
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 3.9e-83 312.4 306 68.0
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 3.9e-83 312.4 310 65.2
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 2.5e-82 309.7 307 62.9
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 4.3e-82 308.9 308 63.3
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 5.6e-82 308.5 307 62.9
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.6e-81 307.0 308 66.9
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 4.4e-79 298.9 312 62.5
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 5.8e-79 298.5 318 56.6
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 3.7e-78 295.8 296 66.6
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 4.1e-77 292.4 309 59.5
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 4.1e-77 292.4 309 59.5
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 1.6e-76 290.4 318 61.9
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 8.6e-75 284.6 296 62.5
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.5e-74 283.9 298 64.1
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 1.9e-74 283.5 323 61.3
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 2.5e-74 283.1 310 62.6
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 3.3e-74 282.7 301 66.8
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 3.3e-74 282.7 300 63.3
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 9.6e-74 281.2 303 60.7
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 2.8e-73 279.6 306 63.1
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 8.1e-73 278.1 308 60.7
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 1.8e-72 276.9 304 60.9
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 2.4e-72 276.6 316 63.0
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 4.0e-72 275.8 314 59.6
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 5.2e-72 275.4 310 61.6
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 6.8e-72 275.0 316 59.2
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.5e-71 273.9 305 60.3
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 1.5e-71 273.9 307 59.6
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 2.0e-71 273.5 306 60.5
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 3.4e-71 272.7 313 61.7
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 9.9e-71 271.2 311 58.5
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 4.9e-70 268.9 304 64.1
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 4.9e-70 268.9 322 59.9
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 4.9e-70 268.9 309 58.3
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 1.1e-69 267.7 300 60.0
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 1.9e-69 266.9 301 57.8
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 3.2e-69 266.2 307 60.3
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 5.4e-69 265.4 305 60.0
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 7.1e-69 265.0 289 56.4
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 2.7e-68 263.1 307 61.2
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 2.7e-68 263.1 297 58.2
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 4.6e-68 262.3 298 62.1
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 1.3e-67 260.8 295 65.1
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 1.7e-67 260.4 303 57.4
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 1.7e-67 260.4 300 56.7
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 5.1e-67 258.8 311 59.8
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 6.6e-67 258.5 301 60.8
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 6.6e-67 258.5 301 60.8
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.9e-66 256.9 304 59.2
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 3.3e-66 256.1 303 59.4
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.3e-66 255.8 317 61.5
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 4.3e-66 255.8 301 64.1
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 5.6e-66 255.4 326 61.3
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 5.6e-66 255.4 296 57.8
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 1.6e-65 253.8 302 61.6
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 1.6e-65 253.8 300 59.3
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.6e-65 253.8 308 59.7
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 1.6e-65 253.8 300 60.0
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 2.1e-65 253.4 307 57.3
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 2.1e-65 253.4 317 56.5
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 2.8e-65 253.1 301 64.5
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 3.6e-65 252.7 299 58.9
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 6.2e-65 251.9 314 58.3
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 8.1e-65 251.5 302 61.3
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 8.1e-65 251.5 301 62.5
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 3.1e-64 249.6 298 58.4
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 3.1e-64 249.6 312 59.0
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 4.0e-64 249.2 320 57.5
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 5.3e-64 248.8 310 57.7
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 6.9e-64 248.4 255 65.9
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 9.0e-64 248.1 306 58.2
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 2.0e-63 246.9 291 57.0
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 2.6e-63 246.5 312 55.4
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 2.6e-63 246.5 305 57.4
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 3.4e-63 246.1 307 56.4
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 3.4e-63 246.1 307 56.4
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 5.8e-63 245.4 298 60.7
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 7.6e-63 245.0 307 60.9
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 9.9e-63 244.6 301 59.1
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.7e-62 243.8 311 57.6
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 2.9e-62 243.0 309 56.6
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 4.9e-62 242.3 311 52.4
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 4.9e-62 242.3 306 56.5
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 6.4e-62 241.9 308 55.8
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 1.4e-61 240.7 304 60.5
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 1.4e-61 240.7 317 55.2
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 1.9e-61 240.4 302 57.0
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 9.3e-61 238.0 302 57.0
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 9.3e-61 238.0 305 60.3
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 3.5e-60 236.1 345 54.8
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 1.0e-59 234.6 317 57.7
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 1.3e-59 234.2 321 57.0
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 1.3e-59 234.2 308 56.8
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 1.7e-59 233.8 322 56.8
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 2.3e-59 233.4 306 56.9
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 3.9e-59 232.6 316 58.9
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 5.1e-59 232.3 133 84.2
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 6.2e-57 225.3 309 50.8
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 3.1e-56 223.0 324 58.3
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 5.3e-56 222.2 302 57.6
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 9.0e-56 221.5 324 58.3
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 9.0e-56 221.5 307 53.7
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 9.0e-56 221.5 305 54.1
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 1.2e-55 221.1 295 57.3
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 4.5e-55 219.2 332 53.9
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 1.3e-54 217.6 266 57.9
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 2.2e-54 216.9 307 58.3
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 2.9e-54 216.5 293 56.0
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 3.8e-54 216.1 314 58.0
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.4e-53 214.2 293 51.2
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 4.2e-53 212.6 295 50.5
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 9.3e-53 211.5 301 55.1
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 7.9e-52 208.4 296 55.7
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 6.7e-51 205.3 224 62.1
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.5e-50 203.4 218 62.8
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 2.8e-49 199.9 410 44.6
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 3.7e-49 199.5 302 54.3
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 6.2e-49 198.7 296 49.3
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 2.4e-48 196.8 222 64.4
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 9.0e-48 194.9 302 50.0
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 2.9e-46 189.9 316 53.5
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 4.9e-46 189.1 308 47.7
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 6.5e-46 188.7 293 51.2
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 6.7e-43 178.7 302 48.7
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 8.7e-43 178.3 219 63.0
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 3.7e-41 172.9 305 48.2
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 4.8e-41 172.6 214 58.4
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 2.4e-40 170.2 221 59.3
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 2.4e-40 170.2 216 63.9
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 3.8e-38 162.9 303 45.9
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 3.8e-38 162.9 318 45.6
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 1.1e-37 161.4 293 47.1
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 1.9e-37 160.6 103 76.7
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 3.0e-35 153.3 239 59.4
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.9e-34 150.6 74 94.6
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 7.2e-29 132.1 306 43.5
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 9.4e-29 131.7 200 52.0
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.6e-28 129.4 221 56.6
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 1.0e-27 128.3 128 53.1
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 3.0e-27 126.7 321 38.0
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 8.8e-27 125.2 104 62.5
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 8.8e-27 125.2 320 41.6
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 2.2e-25 120.6 342 41.2
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 1.8e-24 117.5 156 59.0
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.4e-23 113.2 162 59.3
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 1.8e-19 100.9 88 56.8
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.8e-17 93.6 94 55.3
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.8e-16 90.9 114 50.0
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 1.8e-16 90.9 92 53.3
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 7.7e-15 85.5 194 39.2
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 2.9e-14 83.6 64 57.8
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 6.5e-14 82.4 300 38.3
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 2.3e-11 73.9 109 48.6
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 9.7e-10 68.6 89 49.4
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 6.3e-09 65.9 57 54.4
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 8.2e-09 65.5 69 49.3
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.4e-08 63.9 64 50.0
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 9.1e-08 62.0 317 28.1
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.7e-07 60.5 92 41.3
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 5.9e-07 59.3 123 37.4
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 1.7e-06 57.8 92 56.5


User provided reference genes

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