Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10021171m.g Eutrema salsugineum HOM05D006207 ORTHO05D007868 1.3e-171 606.3 314 100.0
Sp3g07200 Schrenkiella parvula HOM05D006207 ORTHO05D007868 7.1e-149 530.8 315 89.2
AL3G19780 Arabidopsis lyrata HOM05D006207 ORTHO05D007868 6.7e-147 524.2 314 86.9
AT3G08780 Arabidopsis thaliana HOM05D006207 ORTHO05D007868 4.8e-145 518.1 314 85.7
Carub.0003s0791 Capsella rubella HOM05D006207 ORTHO05D007868 2.4e-144 515.8 314 84.7
C05p59060 Brassica napus HOM05D006207 ORTHO05D007868 3.0e-139 498.8 318 84.0
CARHR083100 Cardamine hirsuta HOM05D006207 ORTHO05D007868 3.9e-139 498.4 314 81.8
BolC5t34558H Brassica oleracea HOM05D006207 ORTHO05D007868 4.5e-135 485.0 317 82.3
A05p40020 Brassica napus HOM05D006207 ORTHO05D007868 3.9e-131 471.9 317 80.1
BraA05t22911Z Brassica rapa HOM05D006207 ORTHO05D007868 1.5e-130 469.9 318 79.6
Aa31LG5G18780 Aethionema arabicum HOM05D006207 ORTHO05D007868 2.0e-130 469.5 296 81.8
THA.LOC104823306 Tarenaya hassleriana HOM05D006207 ORTHO05D007868 5.2e-123 444.9 315 73.0
BcaC05g29617 Brassica carinata HOM05D006207 ORTHO05D007868 7.2e-109 397.9 271 79.3
Cpa.g.sc5.234 Carica papaya HOM05D006207 ORTHO05D007868 1.7e-105 386.7 314 63.4
Manes.09G111300 Manihot esculenta HOM05D006207 ORTHO05D007868 2.1e-92 343.2 316 58.5
CsaV3_4G026760 Cucumis sativus L. HOM05D006207 ORTHO05D007868 6.8e-91 338.2 322 57.5
MELO3C026025.2 Cucumis melo HOM05D006207 ORTHO05D007868 7.5e-90 334.7 320 57.5
ClCG04G006690 Citrullus lanatus HOM05D006207 ORTHO05D007868 1.3e-89 334.0 320 56.6
CANSAT35G0048 Cannabis sativa HOM05D006207 ORTHO05D007868 8.3e-89 331.3 312 57.1
Sed0003544 Sechium edule HOM05D006207 ORTHO05D007868 3.0e-86 322.8 320 55.0
Ciclev10012309m.g Citrus clementina HOM05D006207 ORTHO05D007868 2.5e-85 319.7 312 56.4
Dinv35401 Davidia involucrata HOM05D006207 ORTHO05D007868 2.5e-85 319.7 321 53.9
Actinidia29070 Actinidia chinensis HOM05D006207 ORTHO05D007868 2.1e-84 316.6 316 54.1
Actinidia11552 Actinidia chinensis HOM05D006207 ORTHO05D007868 1.4e-83 313.9 315 54.0
Prupe.6G284500 Prunus persica HOM05D006207 ORTHO05D007868 2.0e-82 310.1 317 54.6
Sed0019485 Sechium edule HOM05D006207 ORTHO05D007868 1.7e-81 307.0 322 52.8
Duzib093G0843 Durio zibethinus HOM05D006207 ORTHO05D007868 3.7e-81 305.8 311 53.7
Atru.chr8.2331 Acer truncatum HOM05D006207 ORTHO05D007868 1.4e-80 303.9 324 51.9
CSS0029336 Camellia sinensis var. sinensis HOM05D006207 ORTHO05D007868 7.1e-80 301.6 321 52.3
CiPaw.09G215000 Carya illinoinensis HOM05D006207 ORTHO05D007868 2.1e-79 300.1 313 54.3
Thecc.05G007100 Theobroma cacao HOM05D006207 ORTHO05D007868 2.1e-79 300.1 313 52.4
RcHm_v2.0_Chr3g0461671 Rosa chinensis HOM05D006207 ORTHO05D007868 1.7e-78 297.0 314 52.2
Gohir.A01G229800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 3.0e-78 296.2 311 52.4
Gohir.A09G167800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 3.9e-78 295.8 313 52.7
GSVIVG01030275001 Vitis vinifera HOM05D006207 ORTHO05D002478 1.9e-77 293.5 313 51.8
Gohir.D01G219700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 5.6e-77 292.0 311 51.8
TAR633G0541 Trochodendron aralioides HOM05D006207 ORTHO05D007868 5.6e-77 292.0 312 51.3
Gorai.002G266400 Gossypium raimondii HOM05D006207 ORTHO05D007868 1.2e-76 290.8 311 51.8
Gorai.006G185200 Gossypium raimondii HOM05D006207 ORTHO05D007868 1.2e-76 290.8 313 51.8
COL.COLO4_14454 Corchorus olitorius HOM05D006207 ORTHO05D007868 2.1e-76 290.0 312 52.2
TAR623G0507 Trochodendron aralioides HOM05D006207 ORTHO05D007868 4.7e-76 288.9 311 50.8
Dinv12164 Davidia involucrata HOM05D006207 ORTHO05D007868 1.1e-75 287.7 326 50.6
vmacro08907 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 1.8e-75 287.0 314 50.3
Lalb_Chr12g0207271 Lupinus albus HOM05D006207 ORTHO05D007868 8.9e-75 284.6 318 50.3
PGR031G0899 Punica granatum HOM05D006207 ORTHO05D007868 1.2e-74 284.3 317 50.8
Lsat_1_v5_gn_8_103441 Lactuca sativa HOM05D006207 ORTHO05D007868 2.6e-74 283.1 314 49.7
Aqoxy1G01290 Aquilegia oxysepala HOM05D006207 ORTHO05D007868 3.4e-74 282.7 333 51.1
Gohir.D09G163700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 4.4e-74 282.3 313 51.4
FAN05G3975 Fragaria x ananassa HOM05D006207 ORTHO05D007868 1.7e-73 280.4 315 50.2
TWI53G1221 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 2.2e-73 280.0 312 51.3
FAN05G5543 Fragaria x ananassa HOM05D006207 ORTHO05D007868 3.7e-73 279.3 315 50.2
TWI74G1498 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 6.4e-73 278.5 310 49.0
Nn2g11009 Nelumbo nucifera HOM05D006207 ORTHO05D007868 2.4e-72 276.6 298 50.3
Duzib106G1231 Durio zibethinus HOM05D006207 ORTHO05D007868 2.7e-71 273.1 297 50.8
Lj3g0024527 Lotus japonicus HOM05D006207 ORTHO05D007868 1.7e-70 270.4 316 49.4
arahy.Tifrunner.gnm1.ann1.S95MPE Arachis hypogaea HOM05D006207 ORTHO05D007868 3.9e-70 269.2 336 47.6
FvH4_6g10650 Fragaria vesca HOM05D006207 ORTHO05D007868 8.6e-70 268.1 315 48.9
FAN14G5611 Fragaria x ananassa HOM05D006207 ORTHO05D007868 8.6e-70 268.1 315 48.9
Psat7g249160 Pisum sativum HOM05D006207 ORTHO05D007868 1.5e-69 267.3 330 49.1
Sabra16G0120700 Salix brachista HOM05D006207 ORTHO05D007868 1.5e-69 267.3 321 47.4
Potri.016G126200 Populus trichocarpa HOM05D006207 ORTHO05D007868 2.5e-69 266.5 320 46.6
Glyma.U032705 Glycine max HOM05D006207 ORTHO05D007868 4.3e-69 265.8 318 48.7
FAN09G2678 Fragaria x ananassa HOM05D006207 ORTHO05D007868 3.6e-68 262.7 315 48.9
Glyma.01G125600 Glycine max HOM05D006207 ORTHO05D007868 6.2e-68 261.9 316 48.7
Phvul.010G064400 Phaseolus vulgaris HOM05D006207 ORTHO05D007868 1.8e-67 260.4 325 49.5
QL07p033964 Quercus lobata HOM05D006207 ORTHO05D007868 3.1e-67 259.6 321 46.4
arahy.Tifrunner.gnm1.ann1.WBCD4G Arachis hypogaea HOM05D006207 ORTHO05D007868 3.4e-66 256.1 337 45.7
Sc01g0005970 Simmondsia chinensis HOM05D006207 ORTHO05D007868 1.9e-64 250.4 317 46.7
Rhsim04G0125000 Rhododendron simsii HOM05D006207 ORTHO05D007868 2.4e-64 250.0 312 47.8
EL10Ac5g12487 Beta vulgaris HOM05D006207 ORTHO05D007868 3.2e-64 249.6 315 46.0
PGSC0003DMG400017108 Solanum tuberosum HOM05D006207 ORTHO05D007868 3.2e-64 249.6 320 43.8
Sopen09g008460 Solanum pennellii HOM05D006207 ORTHO05D007868 7.1e-64 248.4 319 43.6
HanXRQChr16g0510291 Helianthus annuus HOM05D006207 ORTHO05D007868 2.7e-63 246.5 313 47.6
Cc06_g00770 Coffea canephora HOM05D006207 ORTHO05D002478 3.5e-63 246.1 318 44.3
vmacro20324 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 4.6e-63 245.7 306 46.1
SHI12871 Sapria himalayana HOM05D006207 ORTHO05D007868 7.8e-63 245.0 305 47.9
VMungo0331G1865 Vigna mungo HOM05D006207 ORTHO05D007868 2.3e-62 243.4 311 47.3
CAN.G967.4 Capsicum annuum HOM05D006207 ORTHO05D007868 8.7e-62 241.5 318 43.1
Oeu057638.1 Olea europaea HOM05D006207 ORTHO05D007868 1.1e-61 241.1 313 43.5
DCAR_023998 Daucus carota HOM05D006207 ORTHO05D007868 2.1e-60 236.9 312 43.9
Nitab4.5_0000230g0180 Nicotiana tabacum HOM05D006207 ORTHO05D007868 6.2e-60 235.3 302 44.7
CDE07G0940 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 1.1e-59 234.6 311 47.9
Nitab4.5_0015157g0010 Nicotiana tabacum HOM05D006207 ORTHO05D007868 2.4e-59 233.4 300 44.7
Oeu038722.1 Olea europaea HOM05D006207 ORTHO05D007868 3.1e-59 233.0 310 43.2
Cfa017117 Carpinus fangiana HOM05D006207 ORTHO05D007868 1.4e-56 224.2 297 45.8
Peaxi162Scf00744g00339 Petunia axillaris HOM05D006207 ORTHO05D007868 1.2e-55 221.1 329 40.1
TPR.G5270 Trifolium pratense HOM05D006207 ORTHO05D007868 2.7e-55 219.9 325 42.2
ECA236G5132 Erigeron canadensis HOM05D006207 ORTHO05D007868 3.5e-55 219.5 309 43.4
PSO765G0078 Papaver somniferum HOM05D006207 ORTHO05D007868 3.0e-54 216.5 319 41.1
Migut.J00099 Erythranthe guttata HOM05D006207 ORTHO05D007868 8.7e-54 214.9 310 41.6
MSTRG.5544 Avicennia marina HOM05D006207 ORTHO05D007868 7.4e-53 211.8 315 41.6
HPP92_019707 Vanilla planifolia HOM05D006207 ORTHO05D007868 2.1e-52 210.3 320 41.2
Ah.12g059050 Amaranthus hybridus HOM05D006207 ORTHO05D007868 1.8e-51 207.2 303 41.9
MBI03_g07303_MAGBIO Magnolia biondii HOM05D006207 ORTHO05D007868 3.1e-51 206.5 308 42.9
CDE06G0694 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 1.5e-50 204.1 309 43.4
unitig_27.g24873 Utricularia gibba HOM05D006207 ORTHO05D007868 2.4e-48 196.8 309 40.8
Medtr4g014250 Medicago truncatula HOM05D006207 ORTHO05D007868 4.6e-47 192.6 308 39.3
Lj2C67T4 Lonicera japonica HOM05D006207 ORTHO05D007868 2.3e-46 190.3 200 51.0
ATR0594G098 Amborella trichopoda HOM05D006207 ORTHO05D007868 6.7e-46 188.7 300 41.7
Solyc09g015180.4 Solanum lycopersicum HOM05D006207 ORTHO05D007868 1.2e-39 167.9 245 41.6
Lj3P946T49 Lonicera japonica HOM05D006207 ORTHO05D007868 4.6e-39 166.0 185 48.6
SEGI_14997 Sequoiadendron giganteum HOM05D006207 ORTHO05D007868 3.0e-38 163.3 394 31.0
AUR62030762 Chenopodium quinoa HOM05D006207 ORTHO05D007868 2.1e-36 157.1 299 36.8
Rhsim05G0225500 Rhododendron simsii HOM05D006207 ORTHO05D007868 8.2e-36 155.2 180 47.8
Pp3c3_16910 Physcomitrium patens HOM05D006207 ORTHO05D007868 4.5e-34 149.4 352 31.5
Os07g0540200 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 2.7e-31 140.2 306 34.6
Duzib128G0456 Durio zibethinus HOM05D006207 ORTHO05D007868 6.1e-31 139.0 179 46.9
Zm00001eb163300 Zea mays HOM05D006207 ORTHO05D007868 3.9e-30 136.3 303 34.3
MD04G1166200 Malus domestica HOM05D006207 ORTHO05D007868 6.7e-30 135.6 169 47.3
AUR62030533 Chenopodium quinoa HOM05D006207 ORTHO05D007868 3.4e-26 123.2 129 48.1
AagrBONN_evm.TU.Sc2ySwM_368.1939 Anthoceros agrestis HOM05D006207 ORTHO05D007868 6.5e-25 119.0 390 25.1
Os04g0479300 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 1.4e-24 117.9 306 32.0
CBR_g48858 Chara braunii HOM05D006207 ORTHO05D007868 9.4e-24 115.2 336 27.7
Zm00001eb421620 Zea mays HOM05D006207 ORTHO05D007868 3.3e-21 106.7 288 33.0
Ca_20352_v3 Cicer arietinum L. HOM05D006207 ORTHO05D007868 4.1e-19 99.8 88 55.7
MD04G1166100 Malus domestica HOM05D006207 ORTHO05D007868 4.7e-15 86.3 65 61.5
Mapoly0060s0108 Marchantia polymorpha HOM05D006207 ORTHO05D007868 7.9e-15 85.5 419 24.6
SalBow6G1507 Salvia bowleyana HOM05D000800 ORTHO05D000658 2.3e-14 84.0 96 46.9
VMungo1215G0839 Vigna mungo HOM05D006207 ORTHO05D007868 1.6e-10 71.2 77 44.2
BraA04t16351Z Brassica rapa HOM05D006207 ORTHO05D007868 3.5e-10 70.1 45 77.8
VMungo1309G1345 Vigna mungo HOM05D006207 ORTHO05D007868 3.0e-06 57.0 69 43.5
Cc08_g04640 Coffea canephora HOM05D006207 ORTHO05D007868 4.0e-06 56.6 78 43.6


User provided reference genes

Program Settings