Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 2.0e-197 692.2 344 100.0
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 7.5e-168 594.0 314 94.3
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 2.2e-167 592.4 343 87.5
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 2.9e-167 592.0 343 87.2
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 8.3e-167 590.5 344 86.6
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 5.1e-164 581.3 314 90.4
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 5.1e-164 581.3 312 92.6
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 5.6e-163 577.8 312 92.0
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 1.2e-162 576.6 315 91.1
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 2.8e-162 575.5 313 91.1
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 6.2e-162 574.3 314 91.1
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 6.2e-162 574.3 313 90.7
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 2.3e-161 572.4 314 90.8
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 6.8e-161 570.9 312 91.0
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 9.9e-160 567.0 312 90.4
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 1.0e-156 557.0 319 88.4
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 1.1e-155 553.5 313 85.0
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 3.2e-134 482.3 305 74.4
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 1.2e-133 480.3 305 74.4
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 3.5e-133 478.8 305 74.1
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 4.6e-133 478.4 305 75.4
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 7.9e-133 477.6 305 74.8
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 1.8e-132 476.5 314 72.3
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 5.1e-132 474.9 324 70.4
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 6.7e-132 474.6 314 72.6
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 8.7e-132 474.2 302 72.5
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 1.1e-131 473.8 305 73.8
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 1.5e-131 473.4 331 70.4
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 1.9e-131 473.0 311 71.1
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 4.3e-131 471.9 310 71.3
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 5.6e-131 471.5 311 71.1
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 9.6e-131 470.7 315 72.4
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 2.1e-130 469.5 305 73.8
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 8.1e-130 467.6 314 70.7
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 1.1e-129 467.2 314 71.0
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 1.1e-129 467.2 314 71.7
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 2.4e-129 466.1 315 69.8
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 2.4e-129 466.1 311 71.1
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 3.1e-129 465.7 314 71.0
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 5.3e-129 464.9 307 70.7
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.2e-128 463.8 305 72.8
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.5e-128 463.4 314 69.7
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 2.6e-128 462.6 314 69.7
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 7.6e-128 461.1 310 71.6
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 1.3e-127 460.3 315 68.6
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 1.7e-127 459.9 317 68.1
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 1.7e-127 459.9 314 68.8
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 1.7e-127 459.9 315 68.6
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 2.9e-127 459.1 314 69.4
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 3.8e-127 458.8 314 70.4
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 4.9e-127 458.4 311 69.8
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 8.4e-127 457.6 314 70.1
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 1.1e-126 457.2 314 68.5
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 1.1e-126 457.2 314 69.1
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 1.1e-126 457.2 314 70.1
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 1.4e-126 456.8 313 69.6
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 1.9e-126 456.4 311 68.8
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 1.9e-126 456.4 311 69.1
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 3.2e-126 455.7 314 70.1
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 4.2e-126 455.3 314 69.4
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 4.2e-126 455.3 317 67.5
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 5.5e-126 454.9 314 68.5
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 1.2e-125 453.8 312 69.6
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 1.2e-125 453.8 316 70.3
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 1.2e-125 453.8 314 70.4
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 2.7e-125 452.6 315 68.9
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 2.7e-125 452.6 312 67.9
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 4.6e-125 451.8 315 67.6
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.8e-124 449.9 314 68.8
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 8.7e-124 447.6 310 68.7
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 1.1e-123 447.2 314 68.2
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 3.3e-123 445.7 314 67.2
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 4.3e-123 445.3 314 66.6
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 7.4e-123 444.5 310 68.7
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 9.6e-123 444.1 314 68.8
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 9.6e-123 444.1 310 69.4
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 9.6e-123 444.1 314 67.5
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 1.3e-122 443.7 313 67.1
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 2.1e-122 443.0 311 65.9
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 3.7e-122 442.2 311 65.9
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 4.8e-122 441.8 314 65.6
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 4.8e-122 441.8 303 67.3
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 6.2e-122 441.4 314 66.6
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 1.4e-121 440.3 318 64.8
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 2.4e-121 439.5 311 66.9
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 3.1e-121 439.1 314 67.2
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 4.1e-121 438.7 338 64.5
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 9.0e-121 437.6 314 64.3
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 1.5e-120 436.8 311 67.2
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 2.6e-120 436.0 311 66.6
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 2.6e-120 436.0 416 53.6
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 3.4e-120 435.6 310 67.1
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 2.5e-118 429.5 314 64.3
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 5.5e-118 428.3 345 62.3
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 3.5e-117 425.6 313 67.4
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 4.6e-117 425.2 313 67.4
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 8.7e-116 421.0 399 54.9
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 1.3e-114 417.2 314 65.6
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 3.7e-114 415.6 310 65.5
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 1.5e-112 410.2 323 64.4
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 3.4e-112 409.1 302 64.9
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 8.5e-111 404.4 314 63.1
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 4.6e-109 398.7 210 92.9
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 4.6e-109 398.7 302 63.9
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 1.1e-105 387.5 279 65.6
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 4.1e-105 385.6 261 70.1
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 1.1e-102 377.5 264 66.7
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 7.2e-102 374.8 270 65.9
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 4.2e-94 349.0 243 67.1
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 8.0e-93 344.7 320 54.4
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 7.5e-91 338.2 307 52.8
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 7.2e-86 321.6 294 54.8
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 8.0e-85 318.2 262 62.2
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 3.4e-83 312.8 206 72.8
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 4.4e-83 312.4 306 51.3
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 1.7e-82 310.5 308 52.6
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 2.8e-82 309.7 221 65.6
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 9.2e-73 278.1 182 69.8
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 1.9e-70 270.4 182 67.6
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 1.8e-65 253.8 170 75.9
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 8.6e-63 245.0 130 93.8
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 4.3e-62 242.7 242 47.1
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 4.7e-61 239.2 183 63.4
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 8.9e-60 235.0 186 64.5
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 5.6e-54 215.7 147 70.1
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 3.2e-49 199.9 188 51.6
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 1.5e-46 191.0 127 70.1
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 9.9e-43 178.3 196 48.5
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 2.4e-41 173.7 130 64.6
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 1.3e-39 167.9 112 73.2
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 6.2e-37 159.1 109 70.6
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.1e-33 148.3 145 51.7
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 3.5e-32 143.3 109 62.4
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.3e-31 140.6 109 63.3
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 3.9e-31 139.8 112 60.7
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 5.3e-20 102.8 88 54.5
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 3.0e-15 87.0 52 71.2
BcaB01g01688 Brassica carinata HOM05D006432 ORTHO05D008257 4.6e-08 63.2 27 100.0


User provided reference genes

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