Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 2.5e-182 642.1 355 100.0
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 7.8e-176 620.5 357 96.6
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 1.2e-173 613.2 358 95.3
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 1.2e-173 613.2 357 95.0
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 3.1e-172 608.6 357 94.1
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 2.0e-168 595.9 357 89.9
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 1.1e-166 590.1 355 92.4
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 2.5e-166 589.0 358 92.5
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 3.3e-166 588.6 356 93.0
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 3.3e-166 588.6 358 92.5
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 1.1e-164 583.6 358 91.3
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 1.1e-164 583.6 358 91.3
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 8.9e-164 580.5 357 91.3
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 8.9e-164 580.5 357 91.3
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 1.1e-161 573.5 365 89.3
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 2.4e-161 572.4 360 90.8
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 1.7e-159 566.2 357 89.6
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 3.0e-159 565.5 357 89.6
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 2.2e-154 549.3 363 87.6
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 3.8e-146 521.9 333 88.6
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 4.9e-146 521.5 358 85.5
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.1e-142 510.4 362 81.5
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 1.4e-132 476.9 311 81.0
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 1.2e-131 473.8 304 88.8
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 5.4e-129 464.9 345 71.9
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 4.3e-126 455.3 355 67.3
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 9.6e-126 454.1 355 67.3
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.3e-125 453.8 351 72.1
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 2.1e-125 453.0 354 66.9
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 6.2e-125 451.4 339 70.2
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 6.2e-125 451.4 347 67.4
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 6.2e-125 451.4 347 67.4
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 8.1e-125 451.1 345 68.4
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 1.1e-124 450.7 346 68.5
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.8e-124 449.9 347 67.1
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 1.2e-123 447.2 349 67.9
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 1.2e-123 447.2 353 70.0
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 1.5e-123 446.8 341 68.6
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 5.8e-123 444.9 348 75.0
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 4.9e-122 441.8 359 67.1
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 8.4e-122 441.0 355 67.3
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 8.4e-122 441.0 344 69.2
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 1.4e-121 440.3 349 67.9
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 1.9e-121 439.9 358 66.5
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 3.2e-121 439.1 343 66.8
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 5.5e-121 438.3 357 65.8
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 9.3e-121 437.6 359 65.5
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 9.3e-121 437.6 327 68.5
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 9.3e-121 437.6 329 67.8
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 1.2e-120 437.2 361 65.7
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 1.2e-120 437.2 358 64.8
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 1.6e-120 436.8 361 65.7
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 1.6e-120 436.8 359 68.0
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 1.6e-120 436.8 359 68.0
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 1.6e-120 436.8 341 68.0
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 2.1e-120 436.4 355 67.3
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 2.1e-120 436.4 339 66.7
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 4.6e-120 435.3 344 66.3
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 4.6e-120 435.3 337 67.1
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 6.0e-120 434.9 355 67.6
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 1.3e-119 433.7 359 64.9
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 3.0e-119 432.6 334 67.4
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 3.9e-119 432.2 364 63.2
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 5.1e-119 431.8 342 65.5
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 5.1e-119 431.8 311 71.4
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 5.1e-119 431.8 357 65.3
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 6.7e-119 431.4 340 64.4
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 8.7e-119 431.0 347 64.6
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.1e-118 430.6 340 65.9
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 1.5e-118 430.3 357 65.0
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 1.5e-118 430.3 349 67.3
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 4.3e-118 428.7 348 65.8
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 5.6e-118 428.3 327 69.7
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 5.6e-118 428.3 341 66.0
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 5.6e-118 428.3 357 64.1
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 9.6e-118 427.6 343 65.6
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 1.3e-117 427.2 358 65.9
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 2.1e-117 426.4 363 62.8
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 2.8e-117 426.0 350 64.3
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 2.8e-117 426.0 319 69.0
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 6.2e-117 424.9 357 64.7
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 8.2e-117 424.5 321 69.5
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 8.2e-117 424.5 384 60.4
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 1.8e-116 423.3 357 63.0
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.8e-116 423.3 384 60.4
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 2.4e-116 422.9 329 70.5
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 2.4e-116 422.9 378 61.4
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 3.1e-116 422.5 358 63.7
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 4.0e-116 422.2 349 64.5
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 4.0e-116 422.2 343 63.6
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 1.2e-115 420.6 349 64.8
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 1.2e-115 420.6 321 68.8
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 1.2e-115 420.6 333 64.3
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 1.2e-115 420.6 336 64.0
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 1.0e-114 417.5 356 62.4
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 1.3e-114 417.2 311 74.9
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 1.7e-114 416.8 343 63.6
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 1.7e-114 416.8 346 62.4
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 2.9e-114 416.0 322 65.8
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 6.5e-114 414.8 318 74.8
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 8.4e-114 414.5 355 62.8
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 1.1e-113 414.1 308 68.8
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 1.1e-113 414.1 349 64.8
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 1.4e-113 413.7 349 65.0
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 1.4e-113 413.7 350 63.4
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 1.9e-113 413.3 355 66.2
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 2.5e-113 412.9 338 65.1
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 2.5e-113 412.9 337 65.3
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 3.2e-113 412.5 310 66.8
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 5.5e-113 411.8 306 68.0
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 1.2e-112 410.6 315 66.3
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 1.6e-112 410.2 341 64.2
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 1.3e-111 407.1 353 62.6
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 5.1e-111 405.2 317 66.2
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 2.5e-110 402.9 355 60.8
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 6.9e-108 394.8 323 61.9
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 9.0e-108 394.4 328 62.5
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 2.0e-107 393.3 306 67.0
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 2.9e-106 389.4 291 68.4
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 1.9e-105 386.7 452 51.5
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 1.9e-105 386.7 352 58.5
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 3.2e-105 386.0 264 82.2
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 1.6e-104 383.6 294 66.0
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 2.1e-104 383.3 359 58.8
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 3.6e-104 382.5 362 56.1
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 1.8e-103 380.2 359 56.8
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 2.3e-103 379.8 350 59.7
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 2.3e-103 379.8 357 56.3
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 6.7e-103 378.3 345 55.9
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.5e-102 377.1 337 60.8
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 1.7e-101 373.6 326 62.9
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 5.9e-99 365.2 346 59.8
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 7.2e-97 358.2 346 54.0
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 1.4e-95 354.0 326 57.4
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 2.6e-91 339.7 284 64.1
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 5.3e-84 315.5 328 49.4
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 2.2e-82 310.1 444 46.4
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 1.3e-77 294.3 305 50.2
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 8.3e-77 291.6 316 55.4
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 5.9e-75 285.4 320 49.1
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 3.8e-74 282.7 275 57.5
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 8.5e-74 281.6 208 68.8
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 5.5e-73 278.9 295 49.2
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 2.1e-72 276.9 343 46.6
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 9.1e-68 261.5 218 63.8
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 1.3e-66 257.7 211 64.5
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 2.8e-64 250.0 204 62.7
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 1.2e-62 244.6 219 62.1
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 1.5e-62 244.2 192 65.1
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 9.8e-62 241.5 188 63.8
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 9.8e-62 241.5 239 55.6
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 6.1e-56 222.2 313 40.9
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 1.3e-45 188.0 141 67.4
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 8.3e-45 185.3 132 69.7
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 1.5e-41 174.5 139 64.7
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 1.4e-31 141.4 123 61.8
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 4.0e-31 139.8 142 53.5
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 2.9e-21 107.1 215 30.7
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 5.4e-20 102.8 104 53.8
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 4.6e-19 99.8 108 53.7
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 4.3e-17 93.2 256 28.5
BcaB01g01266 Brassica carinata HOM05D000313 ORTHO05D000065 4.3e-09 66.6 38 92.1
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 5.6e-09 66.2 92 38.0


User provided reference genes

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