Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 4.8e-181 637.9 366 100.0
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 3.4e-166 588.6 366 84.4
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 1.0e-162 577.0 364 83.2
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 4.0e-159 565.1 364 81.0
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 7.5e-158 560.8 364 81.0
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 1.3e-157 560.1 364 81.0
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 1.1e-156 557.0 369 81.0
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 5.4e-156 554.7 366 80.1
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 4.6e-155 551.6 366 80.1
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 1.0e-154 550.4 364 80.2
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 1.0e-154 550.4 364 80.5
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 7.3e-153 544.3 374 78.1
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 3.2e-148 528.9 368 77.7
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 7.1e-148 527.7 361 77.0
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 3.1e-143 512.3 351 76.6
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 2.6e-142 509.2 367 72.5
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 9.9e-142 507.3 367 72.2
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 9.9e-142 507.3 348 76.4
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 3.7e-141 505.4 348 76.4
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 1.1e-140 503.8 367 71.9
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 5.4e-140 501.5 368 72.3
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 3.9e-138 495.4 367 71.1
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 4.3e-137 491.9 382 69.1
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 4.7e-136 488.4 370 70.5
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.4e-135 486.9 366 69.7
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 2.4e-135 486.1 368 70.7
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 5.2e-135 485.0 362 70.2
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 1.3e-133 480.3 369 69.4
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 4.9e-133 478.4 368 69.0
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 1.1e-132 477.2 354 72.0
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 1.4e-132 476.9 368 68.8
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 1.2e-126 457.2 402 62.9
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 3.8e-125 452.2 398 62.8
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 2.5e-113 412.9 293 75.1
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.4e-111 407.1 366 59.3
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.0e-110 403.3 366 58.5
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 4.5e-110 402.1 366 58.5
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 8.4e-109 397.9 364 57.4
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 1.1e-108 397.5 364 57.1
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.6e-107 393.7 364 56.6
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.6e-107 393.7 368 57.9
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 2.7e-107 392.9 365 58.4
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 4.6e-107 392.1 366 57.4
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 1.0e-106 391.0 364 58.0
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 1.3e-106 390.6 366 57.4
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 3.9e-106 389.0 377 55.2
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 6.7e-106 388.3 364 54.9
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.1e-105 387.5 365 56.2
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.9e-105 386.7 363 55.6
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 4.3e-105 385.6 367 55.3
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.1e-104 383.3 362 55.2
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 1.4e-103 380.6 366 54.9
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 5.3e-103 378.6 367 52.3
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 5.3e-103 378.6 370 54.6
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 5.3e-103 378.6 367 54.5
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 1.2e-102 377.5 366 53.6
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 2.0e-102 376.7 366 55.5
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 2.9e-101 372.9 375 54.4
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 1.1e-100 370.9 366 53.3
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 3.2e-100 369.4 366 54.1
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 3.2e-100 369.4 366 54.1
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 7.2e-100 368.2 368 54.9
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 7.2e-100 368.2 378 53.7
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 2.1e-99 366.7 368 51.4
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.7e-99 366.3 364 52.7
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 3.6e-99 365.9 368 51.9
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.6e-99 365.9 376 53.7
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 6.1e-99 365.2 378 53.2
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 7.9e-99 364.8 377 53.1
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 1.3e-98 364.0 376 53.2
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.3e-98 364.0 364 52.2
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 2.3e-98 363.2 364 52.2
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 3.0e-98 362.8 370 51.4
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 8.7e-98 361.3 363 52.3
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 8.7e-98 361.3 368 51.9
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 1.1e-97 360.9 364 51.6
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 1.5e-97 360.5 362 52.8
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.5e-97 360.5 364 51.6
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 2.5e-97 359.8 364 51.6
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 4.3e-97 359.0 364 51.4
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 7.4e-97 358.2 364 51.1
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.8e-95 353.6 379 50.1
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 4.1e-95 352.4 378 51.6
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 5.9e-94 348.6 366 49.7
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 5.0e-93 345.5 367 50.7
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 6.5e-93 345.1 368 49.7
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 1.9e-92 343.6 363 49.9
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 3.2e-92 342.8 369 50.1
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 4.2e-92 342.4 367 49.9
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.2e-91 340.9 385 50.1
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 1.6e-91 340.5 366 50.8
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 3.6e-91 339.3 367 49.3
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 3.0e-90 336.3 361 48.5
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 3.9e-90 335.9 367 50.1
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 1.1e-89 334.3 367 49.3
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 1.1e-89 334.3 364 50.0
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 2.6e-89 333.2 364 49.2
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 2.6e-89 333.2 372 49.7
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 2.6e-89 333.2 365 49.6
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 3.3e-89 332.8 365 49.3
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 9.7e-89 331.3 320 55.3
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 2.8e-88 329.7 369 47.4
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 2.4e-87 326.6 375 48.5
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 9.1e-87 324.7 371 47.4
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 1.2e-86 324.3 369 50.4
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 1.5e-86 323.9 367 47.4
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 4.5e-86 322.4 405 44.0
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 1.3e-85 320.9 246 64.6
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 1.3e-85 320.9 495 41.0
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 2.2e-85 320.1 401 45.4
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 2.2e-85 320.1 332 50.6
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 2.5e-84 316.6 246 62.2
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 4.2e-84 315.8 391 44.0
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 7.2e-84 315.1 365 47.4
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 4.7e-83 312.4 307 53.7
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 4.7e-83 312.4 505 39.4
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.1e-81 307.8 314 52.9
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 8.2e-80 301.6 352 47.7
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 2.0e-78 297.0 366 42.9
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 4.5e-78 295.8 374 45.7
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 5.0e-77 292.4 333 50.8
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.9e-76 290.4 314 52.2
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 3.2e-76 289.7 365 44.9
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 9.4e-76 288.1 316 51.6
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 1.2e-73 281.2 369 40.9
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.5e-73 280.8 370 42.7
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 9.7e-73 278.1 207 66.7
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.7e-70 270.0 208 65.4
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 7.7e-70 268.5 309 48.2
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 2.5e-68 263.5 307 46.9
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 9.4e-68 261.5 208 61.1
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 5.2e-66 255.8 564 34.6
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 4.4e-65 252.7 227 56.8
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 7.5e-65 251.9 207 60.9
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 7.2e-60 235.3 166 71.7
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.6e-59 233.0 163 71.2
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 8.0e-59 231.9 166 71.1
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.4e-58 231.1 166 71.1
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.0e-57 227.3 166 70.5
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 2.8e-56 223.4 165 67.3
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 6.3e-56 222.2 474 31.6
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.8e-55 220.7 162 67.3
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.9e-53 213.4 166 67.5
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 5.0e-53 212.6 314 37.3
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 2.8e-51 206.8 320 40.3
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 2.9e-48 196.8 379 33.5
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.1e-47 194.9 155 62.6
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 5.4e-47 192.6 335 36.1
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.5e-44 184.5 307 36.2
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.0e-42 176.4 203 48.3
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.5e-41 174.5 203 47.8
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 1.7e-40 171.0 378 31.7
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 8.3e-40 168.7 381 32.0
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 7.0e-39 165.6 374 31.6
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 2.0e-38 164.1 368 31.5
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 2.0e-38 164.1 205 44.4
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.3e-37 160.6 208 47.6
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 6.6e-37 159.1 127 63.8
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 8.6e-37 158.7 376 29.3
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 1.9e-36 157.5 230 42.2
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 2.5e-36 157.1 200 44.5
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 1.6e-35 154.5 126 60.3
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.8e-34 151.0 110 70.0
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 7.5e-33 145.6 371 28.8
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.9e-32 142.9 152 52.6
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 3.3e-28 130.2 201 35.8
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 1.2e-27 128.3 130 48.5
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.1e-20 105.1 163 39.3
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 2.8e-19 100.5 233 31.3
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 2.8e-19 100.5 156 37.8
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 1.1e-18 98.6 156 37.2
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 4.9e-16 89.7 172 33.1
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 2.4e-15 87.4 190 35.3
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 3.9e-13 80.1 133 35.3
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 2.8e-11 73.9 137 36.5
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 3.6e-11 73.6 136 36.0
Cfa024504 Carpinus fangiana HOM05D002209 ORTHO05D004761 3.5e-06 57.0 317 23.0


User provided reference genes

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