Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 6.1e-216 753.8 369 100.0
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 9.1e-204 713.4 369 94.0
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 4.2e-201 704.5 369 92.4
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 1.5e-198 696.0 370 92.2
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 3.7e-197 691.4 370 91.6
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 8.3e-197 690.3 370 91.1
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 3.0e-186 655.2 371 84.9
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 1.5e-185 652.9 370 85.7
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 3.3e-185 651.7 370 85.7
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 5.6e-185 651.0 369 85.6
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 7.3e-185 650.6 370 85.4
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 1.2e-184 649.8 369 84.8
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 1.0e-178 630.2 369 85.1
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 9.0e-159 563.9 372 73.9
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 5.8e-158 561.2 372 76.1
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 7.6e-150 534.3 372 68.5
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 7.4e-145 517.7 373 65.1
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 5.3e-143 511.5 372 68.0
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 1.2e-142 510.4 372 65.6
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 5.5e-140 501.5 372 64.8
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 7.1e-140 501.1 376 64.9
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 3.5e-139 498.8 374 63.9
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 3.5e-139 498.8 374 64.2
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.0e-139 498.0 374 63.9
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 5.3e-135 485.0 373 64.3
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.5e-134 483.4 372 62.1
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.3e-133 480.3 372 61.6
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.1e-132 477.2 372 61.6
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 6.0e-131 471.5 372 63.2
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 6.7e-130 468.0 372 62.9
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 3.3e-129 465.7 372 59.9
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 7.4e-129 464.5 372 60.8
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 9.7e-129 464.2 372 62.9
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 3.7e-128 462.2 372 60.8
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 1.1e-127 460.7 372 62.1
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 1.4e-127 460.3 372 59.4
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 2.4e-127 459.5 376 62.5
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 1.5e-126 456.8 376 61.4
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 1.1e-124 450.7 372 60.2
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 1.8e-122 443.4 376 59.3
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 2.3e-122 443.0 372 60.8
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 1.1e-121 440.7 372 60.5
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 1.5e-121 440.3 372 59.9
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 2.5e-121 439.5 374 59.4
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 4.3e-121 438.7 376 57.7
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 9.7e-121 437.6 373 59.5
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 1.1e-119 434.1 377 58.9
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 1.4e-119 433.7 372 60.2
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 5.3e-119 431.8 371 59.3
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 5.3e-119 431.8 371 58.2
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 6.9e-119 431.4 383 59.3
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 1.5e-118 430.3 380 58.9
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.5e-118 430.3 371 59.3
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.5e-118 430.3 371 59.3
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 1.5e-118 430.3 376 57.4
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 2.0e-118 429.9 371 59.0
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 4.5e-118 428.7 371 58.8
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 7.7e-118 427.9 377 57.0
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.0e-117 427.6 367 56.4
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 1.3e-117 427.2 372 59.4
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 2.2e-117 426.4 378 57.4
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 2.9e-117 426.0 375 59.5
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 3.2e-116 422.5 382 57.3
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 4.2e-116 422.2 363 59.0
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 5.5e-116 421.8 388 56.2
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 1.2e-115 420.6 373 57.1
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.6e-115 419.1 370 57.6
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.7e-114 414.8 353 56.1
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 3.3e-113 412.5 373 55.8
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 9.7e-113 411.0 373 55.8
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 1.3e-112 410.6 378 55.6
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 2.4e-111 406.4 372 56.7
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 3.5e-110 402.5 372 54.8
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 1.7e-109 400.2 376 54.8
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 3.8e-109 399.1 371 56.3
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 5.0e-109 398.7 378 55.6
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 1.1e-108 397.5 375 55.5
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 1.4e-108 397.1 375 55.7
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 1.9e-108 396.7 377 54.9
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 1.9e-108 396.7 377 54.4
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 3.2e-108 396.0 377 55.7
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 4.2e-108 395.6 377 55.7
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 7.2e-108 394.8 381 53.8
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 1.2e-107 394.0 379 55.9
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 4.7e-107 392.1 376 54.8
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 6.1e-107 391.7 370 56.8
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 8.0e-107 391.3 377 54.6
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.0e-106 391.0 366 54.1
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 1.4e-106 390.6 374 52.9
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 1.8e-106 390.2 371 54.2
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 3.0e-106 389.4 386 54.1
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 2.2e-104 383.3 374 53.2
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 2.8e-104 382.9 372 53.2
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 8.2e-104 381.3 353 55.2
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.8e-103 380.2 374 54.0
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 2.0e-102 376.7 369 52.6
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 3.8e-101 372.5 360 53.3
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 8.5e-101 371.3 373 52.3
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 1.1e-100 370.9 368 50.5
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 1.5e-100 370.5 384 51.8
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 1.2e-99 367.5 372 52.7
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 8.0e-99 364.8 374 52.1
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 4.1e-95 352.4 360 50.3
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 7.5e-89 331.6 338 51.8
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 9.8e-89 331.3 338 51.8
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 2.6e-81 306.6 378 44.4
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 3.4e-81 306.2 455 38.2
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 1.0e-77 294.7 370 44.1
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 2.8e-75 286.6 382 41.6
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 3.6e-75 286.2 299 49.2
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 4.7e-75 285.8 301 48.5
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 3.2e-71 273.1 359 42.6
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 2.0e-70 270.4 373 41.3
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 9.5e-68 261.5 345 41.4
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 1.6e-67 260.8 347 39.5
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 1.4e-63 247.7 373 37.3
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 6.8e-58 228.8 371 36.4
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 8.9e-58 228.4 240 53.3
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 4.3e-52 209.5 182 56.6
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 2.8e-51 206.8 197 51.8
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 1.1e-50 204.9 203 46.8
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 2.6e-49 200.3 256 39.5
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 2.5e-44 183.7 243 39.9
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 9.6e-44 181.8 175 55.4
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 9.3e-39 165.2 95 83.2
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 9.3e-39 165.2 95 83.2
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.0e-37 161.8 127 59.8
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 3.9e-37 159.8 127 58.3
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 7.3e-36 155.6 162 47.5
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 2.8e-35 153.7 285 30.9
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.2e-33 148.3 127 56.7
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 9.9e-33 145.2 145 48.3
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 1.3e-27 128.3 108 59.3
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 7.6e-25 119.0 90 61.1
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 1.3e-24 118.2 90 61.1
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.5e-24 115.9 90 60.0
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 1.6e-22 111.3 288 24.7
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 4.6e-22 109.8 90 56.7
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.7e-21 105.9 95 54.7
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 1.3e-19 101.7 109 46.8
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 1.4e-18 98.2 251 30.7
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 5.8e-17 92.8 94 55.3
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 1.0e-16 92.0 58 75.9
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 2.7e-14 84.0 67 56.7
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 3.9e-13 80.1 77 53.2
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.5e-12 77.4 65 56.9
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 4.8e-11 73.2 109 44.0
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 6.3e-11 72.8 59 57.6
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 1.8e-10 71.2 45 80.0
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 6.5e-08 62.8 81 43.2


User provided reference genes

Program Settings