Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 1.8e-178 629.4 382 100.0
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 3.4e-129 465.7 432 73.8
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 1.4e-127 460.3 424 73.8
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 4.6e-126 455.3 409 70.2
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 1.1e-124 450.7 433 71.8
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 9.7e-124 447.6 419 72.6
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 9.7e-124 447.6 404 71.8
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 4.8e-123 445.3 432 73.4
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 6.9e-122 441.4 416 72.4
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 1.5e-121 440.3 438 71.9
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 1.0e-120 437.6 428 73.1
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 1.7e-120 436.8 419 68.7
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 3.2e-119 432.6 428 71.3
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 4.7e-118 428.7 305 76.7
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 7.9e-118 427.9 428 72.0
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 7.9e-118 427.9 428 72.0
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 1.0e-117 427.6 406 69.2
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 1.4e-117 427.2 290 81.4
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 8.5e-112 407.9 402 69.9
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 4.5e-105 385.6 412 65.3
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 9.1e-90 334.7 305 58.7
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 4.5e-89 332.4 305 59.7
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 5.9e-89 332.0 314 60.2
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 7.7e-89 331.6 288 68.1
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 1.3e-88 330.9 306 59.2
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 1.3e-88 330.9 306 60.1
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 1.9e-87 327.0 305 58.0
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 7.2e-87 325.1 305 58.4
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 1.2e-86 324.3 315 59.0
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 1.2e-86 324.3 304 58.2
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.6e-86 323.9 305 59.0
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 1.6e-86 323.9 305 59.0
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 1.6e-86 323.9 305 58.7
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 2.8e-86 323.2 305 57.7
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 4.7e-86 322.4 406 56.2
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 4.7e-86 322.4 309 58.6
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 1.0e-85 321.2 305 59.0
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 1.0e-85 321.2 304 58.2
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 1.0e-85 321.2 304 58.2
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 1.8e-85 320.5 322 57.1
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 3.0e-85 319.7 310 59.4
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 4.0e-85 319.3 305 57.7
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 4.0e-85 319.3 309 57.0
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 5.2e-85 318.9 309 57.9
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 8.9e-85 318.2 309 57.6
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 8.9e-85 318.2 305 58.0
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 1.2e-84 317.8 302 59.3
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 1.5e-84 317.4 305 57.7
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 1.5e-84 317.4 307 57.3
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 2.0e-84 317.0 305 57.0
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 3.4e-84 316.2 306 57.5
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 5.7e-84 315.5 303 57.1
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 7.5e-84 315.1 317 56.2
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 1.7e-83 313.9 313 56.2
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 1.7e-83 313.9 308 56.8
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 2.9e-83 313.2 314 56.4
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 3.7e-83 312.8 304 57.6
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 4.9e-83 312.4 328 55.2
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 6.4e-83 312.0 302 57.0
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 2.4e-82 310.1 309 56.3
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 2.4e-82 310.1 300 58.7
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 3.2e-82 309.7 304 57.2
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 5.4e-82 308.9 352 50.9
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 7.0e-82 308.5 309 55.7
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 1.2e-81 307.8 304 57.2
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 1.6e-81 307.4 299 56.5
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 1.6e-81 307.4 310 56.1
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 2.0e-81 307.0 299 57.5
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 2.0e-81 307.0 299 57.2
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 2.7e-81 306.6 309 56.0
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 2.7e-81 306.6 299 57.2
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 7.8e-81 305.1 282 58.9
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 7.8e-81 305.1 301 56.5
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 1.0e-80 304.7 294 56.5
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 1.7e-80 303.9 307 56.4
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.3e-80 303.5 311 55.6
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 2.3e-80 303.5 329 53.2
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.9e-80 303.1 311 55.6
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 5.0e-80 302.4 311 55.6
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 6.6e-80 302.0 311 55.3
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 6.6e-80 302.0 331 52.9
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 8.6e-80 301.6 304 54.9
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 8.6e-80 301.6 329 52.6
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 1.1e-79 301.2 331 52.3
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 1.1e-79 301.2 311 55.6
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 2.5e-79 300.1 301 55.8
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 7.3e-79 298.5 404 46.0
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 4.7e-78 295.8 299 55.9
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 1.8e-77 293.9 311 53.7
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 5.2e-77 292.4 305 53.1
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 1.2e-76 291.2 284 57.7
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 7.5e-76 288.5 307 53.4
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 7.5e-76 288.5 304 53.9
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 1.3e-75 287.7 311 52.7
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 1.7e-75 287.3 302 54.0
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 1.4e-74 284.3 301 53.2
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 1.9e-74 283.9 302 53.3
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 4.1e-74 282.7 312 51.3
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 7.0e-74 282.0 293 53.9
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 7.8e-73 278.5 298 52.7
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 3.0e-72 276.6 330 50.3
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 6.6e-72 275.4 275 56.0
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 6.6e-72 275.4 284 53.9
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 6.6e-72 275.4 284 53.5
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 4.3e-71 272.7 310 51.6
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 6.8e-69 265.4 299 53.8
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 2.9e-67 260.0 267 54.7
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 5.4e-66 255.8 304 49.7
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.1e-65 253.8 418 41.4
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 1.7e-59 234.2 310 46.5
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 1.2e-54 218.0 225 55.6
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 7.6e-52 208.8 253 51.0
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 9.6e-47 191.8 161 68.3
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 2.6e-44 183.7 201 51.7
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 4.9e-43 179.5 274 40.9
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 5.4e-42 176.0 308 34.7
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 9.3e-42 175.3 309 35.6
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 4.8e-38 162.9 133 65.4
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 6.2e-38 162.5 196 51.0
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.4e-34 151.4 111 64.9
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 1.9e-34 151.0 112 71.4
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 6.2e-30 136.0 147 53.7
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 1.3e-24 118.2 226 34.5
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 3.9e-24 116.7 351 29.9
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 3.9e-24 116.7 96 61.5
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 1.3e-22 111.7 338 27.5
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 3.7e-22 110.2 87 65.5
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 3.7e-22 110.2 171 38.6
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 6.3e-22 109.4 196 37.8
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 6.9e-21 105.9 139 48.9
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 4.2e-18 96.7 137 45.3
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 9.3e-18 95.5 130 45.4
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 3.9e-16 90.1 155 37.4
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 6.7e-16 89.4 69 63.8
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.5e-15 88.2 138 43.5
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 3.3e-15 87.0 62 71.0
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 8.2e-14 82.4 59 67.8
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 4.1e-13 80.1 59 66.1
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 5.3e-13 79.7 117 42.7
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 5.3e-13 79.7 135 40.7
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 1.2e-12 78.6 63 66.7
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 2.0e-12 77.8 55 69.1
arahy.Tifrunner.gnm1.ann1.HIFV4E Arachis hypogaea HOM05D001638 ORTHO05D005197 3.4e-12 77.0 153 34.6
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 1.0e-11 75.5 320 26.6
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 1.3e-11 75.1 306 28.1
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 1.1e-10 72.0 93 47.3
arahy.Tifrunner.gnm1.ann1.11FR17 Arachis hypogaea HOM05D001638 ORTHO05D005197 7.9e-09 65.9 53 62.3
MD02G1264200 Malus domestica HOM05D001638 ORTHO05D005197 7.9e-09 65.9 44 77.3
FAN06G2650 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.0e-08 65.5 89 47.2
Actinidia12155 Actinidia chinensis HOM05D001638 ORTHO05D005197 3.9e-08 63.5 77 49.4
Sed0021805 Sechium edule HOM05D001638 ORTHO05D005197 1.1e-07 62.0 132 38.6


User provided reference genes

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