Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10020879m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 8.3e-211 736.9 396 100.0
Carub.0003s0419 Capsella rubella HOM05D005874 ORTHO05D007206 2.4e-181 639.0 399 86.5
BraA05t22992Z Brassica rapa HOM05D005874 ORTHO05D007206 9.3e-170 600.5 401 83.5
A05p42610 Brassica napus HOM05D005874 ORTHO05D007206 1.6e-169 599.7 401 83.3
C05p62300 Brassica napus HOM05D005874 ORTHO05D007206 6.0e-169 597.8 393 84.0
BcaC05g29976 Brassica carinata HOM05D005874 ORTHO05D007206 1.7e-168 596.3 393 83.2
BolC5t34886H Brassica oleracea HOM05D005874 ORTHO05D007206 1.7e-168 596.3 393 83.7
Aa31LG5G15480 Aethionema arabicum HOM05D005874 ORTHO05D007206 1.6e-166 589.7 396 75.5
Sp2g20520 Schrenkiella parvula HOM05D005874 ORTHO05D007206 7.1e-162 574.3 383 80.7
Thhalv10004370m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 1.5e-159 566.6 383 79.6
THA.LOC104818669 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 5.8e-156 554.7 388 77.8
A09p05220 Brassica napus HOM05D005874 ORTHO05D007206 2.9e-155 552.4 383 71.8
BcaC04g23685 Brassica carinata HOM05D005874 ORTHO05D007206 6.4e-155 551.2 383 71.8
BraA09t36161Z Brassica rapa HOM05D005874 ORTHO05D007206 1.1e-154 550.4 383 71.8
C09p05680 Brassica napus HOM05D005874 ORTHO05D007206 2.4e-154 549.3 383 71.5
BolC9t53497H Brassica oleracea HOM05D005874 ORTHO05D007206 2.4e-154 549.3 383 71.5
CARHR185900 Cardamine hirsuta HOM05D005874 ORTHO05D007206 3.2e-154 548.9 394 75.1
THA.LOC104802814 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 1.0e-152 543.9 386 76.4
BcaC04g23688 Brassica carinata HOM05D005874 ORTHO05D007206 6.7e-152 541.2 383 72.1
GSVIVG01022009001 Vitis vinifera HOM05D005874 ORTHO05D007206 7.1e-146 521.2 395 66.8
CANSAT54G0668 Cannabis sativa HOM05D005874 ORTHO05D007206 1.6e-145 520.0 396 71.7
MELO3C014079.2 Cucumis melo HOM05D005874 ORTHO05D007206 3.3e-143 512.3 390 64.4
TAR362G0076 Trochodendron aralioides HOM05D005874 ORTHO05D007206 3.3e-143 512.3 399 70.2
CsaV3_3G003940 Cucumis sativus L. HOM05D005874 ORTHO05D007206 4.3e-143 511.9 390 64.4
CiPaw.07G012300 Carya illinoinensis HOM05D005874 ORTHO05D007206 1.6e-142 510.0 388 67.3
Hma1.2p1_0071F.1_g037960 Hydrangea macrophylla HOM05D005874 ORTHO05D007206 5.3e-141 505.0 395 65.8
Prupe.6G333100 Prunus persica HOM05D005874 ORTHO05D007206 1.5e-140 503.4 395 65.1
QL03p002925 Quercus lobata HOM05D005874 ORTHO05D007206 1.5e-140 503.4 396 65.4
BcaB04g19660 Brassica carinata HOM05D005874 ORTHO05D007206 1.3e-139 500.4 376 67.8
Actinidia05739 Actinidia chinensis HOM05D005874 ORTHO05D007206 2.5e-138 496.1 397 64.0
Gohir.D13G178100 Gossypium hirsutum HOM05D005874 ORTHO05D007206 3.2e-138 495.7 388 64.7
MD12G1227400 Malus domestica HOM05D005874 ORTHO05D007206 1.2e-137 493.8 395 63.3
MD04G1213200 Malus domestica HOM05D005874 ORTHO05D007206 1.6e-137 493.4 395 63.3
Gorai.013G203400 Gossypium raimondii HOM05D005874 ORTHO05D007206 2.7e-137 492.7 388 64.4
Eucgr.B02032 Eucalyptus grandis HOM05D005874 ORTHO05D007206 1.4e-136 490.3 392 62.5
arahy.Tifrunner.gnm1.ann1.QVQE66 Arachis hypogaea HOM05D005874 ORTHO05D007206 6.7e-136 488.0 386 65.3
Glyma.03G242000 Glycine max HOM05D005874 ORTHO05D007206 6.7e-136 488.0 386 62.4
Glyma.19G239400 Glycine max HOM05D005874 ORTHO05D007206 1.1e-135 487.3 387 62.8
Ciclev10001418m.g Citrus clementina HOM05D005874 ORTHO05D007206 1.5e-135 486.9 388 68.8
Actinidia30901 Actinidia chinensis HOM05D005874 ORTHO05D007206 2.0e-135 486.5 390 65.9
arahy.Tifrunner.gnm1.ann1.MWM6LR Arachis hypogaea HOM05D005874 ORTHO05D007206 2.0e-135 486.5 386 65.0
Cc02_g32810 Coffea canephora HOM05D005874 ORTHO05D007206 2.5e-135 486.1 395 66.6
CSS0017417 Camellia sinensis var. sinensis HOM05D005874 ORTHO05D007206 5.7e-135 485.0 419 60.4
Phvul.006G096000 Phaseolus vulgaris HOM05D005874 ORTHO05D007206 7.4e-135 484.6 386 62.2
FvH4_6g04920 Fragaria vesca HOM05D005874 ORTHO05D007206 9.7e-135 484.2 386 63.5
Duzib128G0205 Durio zibethinus HOM05D005874 ORTHO05D007206 2.2e-134 483.0 373 71.0
Rhsim07G0178000 Rhododendron simsii HOM05D005874 ORTHO05D007206 2.2e-134 483.0 402 67.2
PSO832G1738 Papaver somniferum HOM05D005874 ORTHO05D007206 2.8e-134 482.6 388 62.9
Sopen08g010120 Solanum pennellii HOM05D005874 ORTHO05D007206 2.8e-134 482.6 388 63.4
BcaB04g19663 Brassica carinata HOM05D005874 ORTHO05D007206 6.3e-134 481.5 383 65.5
FAN05G2497 Fragaria x ananassa HOM05D005874 ORTHO05D007206 6.3e-134 481.5 386 63.2
Solyc08g029200.3 Solanum lycopersicum HOM05D005874 ORTHO05D007206 6.3e-134 481.5 388 63.1
VMungo0540G0326 Vigna mungo HOM05D005874 ORTHO05D007206 8.2e-134 481.1 394 61.2
FAN05G4189 Fragaria x ananassa HOM05D005874 ORTHO05D007206 2.4e-133 479.6 386 63.0
PGR031G1977 Punica granatum HOM05D005874 ORTHO05D007206 4.1e-133 478.8 390 67.4
RcHm_v2.0_Chr3g0453421 Rosa chinensis HOM05D005874 ORTHO05D007206 4.1e-133 478.8 386 63.2
CAN.G56.14 Capsicum annuum HOM05D005874 ORTHO05D007206 6.9e-133 478.0 388 63.7
AT3G04970 Arabidopsis thaliana HOM05D005874 ORTHO05D007206 2.6e-132 476.1 312 86.9
TWI36G0483 Tripterygium wilfordii HOM05D005874 ORTHO05D007206 3.4e-132 475.7 388 62.4
AL3G15310 Arabidopsis lyrata HOM05D005874 ORTHO05D007206 4.5e-132 475.3 313 86.3
FAN09G3845 Fragaria x ananassa HOM05D005874 ORTHO05D007206 4.5e-132 475.3 394 61.9
Lj1g0003731 Lotus japonicus HOM05D005874 ORTHO05D007206 4.5e-132 475.3 387 67.2
vmacro05048 Vaccinium macrocarpon HOM05D005874 ORTHO05D007206 1.0e-131 474.2 435 62.5
ATR0487G009 Amborella trichopoda HOM05D005874 ORTHO05D007206 2.2e-131 473.0 389 61.4
MSTRG.10544 Avicennia marina HOM05D005874 ORTHO05D007206 3.8e-131 472.2 387 61.5
Aqoxy5G00596 Aquilegia oxysepala HOM05D005874 ORTHO05D007206 5.0e-131 471.9 388 63.4
Dinv22927 Davidia involucrata HOM05D005874 ORTHO05D007206 1.1e-130 470.7 395 62.0
Sc06g0003460 Simmondsia chinensis HOM05D005874 ORTHO05D007206 1.4e-130 470.3 386 61.1
Migut.L01513 Erythranthe guttata HOM05D005874 ORTHO05D007206 4.2e-130 468.8 387 60.7
QL03p003516 Quercus lobata HOM05D005874 ORTHO05D007206 4.2e-130 468.8 473 54.5
Lalb_Chr15g0077001 Lupinus albus HOM05D005874 ORTHO05D007206 2.1e-129 466.5 387 59.7
TPR.G21789 Trifolium pratense HOM05D005874 ORTHO05D007206 3.6e-129 465.7 388 59.0
ECA232G3849 Erigeron canadensis HOM05D005874 ORTHO05D007206 4.7e-129 465.3 397 62.7
Psat3g009240 Pisum sativum HOM05D005874 ORTHO05D007206 4.7e-129 465.3 388 59.5
Medtr7g114080 Medicago truncatula HOM05D005874 ORTHO05D007206 6.1e-129 464.9 388 60.6
CARHR079280 Cardamine hirsuta HOM05D005874 ORTHO05D007206 2.3e-128 463.0 315 83.5
FAN14G1317 Fragaria x ananassa HOM05D005874 ORTHO05D007206 2.3e-128 463.0 386 61.9
HanXRQChr09g0254601 Helianthus annuus HOM05D005874 ORTHO05D007206 2.3e-128 463.0 390 60.3
Cpa.g.sc84.114 Carica papaya HOM05D005874 ORTHO05D007206 1.5e-127 460.3 396 60.4
Atru.chr2.537 Acer truncatum HOM05D005874 ORTHO05D007206 2.0e-127 459.9 367 62.1
Lsat_1_v5_gn_4_139320 Lactuca sativa HOM05D005874 ORTHO05D007206 5.7e-127 458.4 400 59.8
Oeu052135.1 Olea europaea HOM05D005874 ORTHO05D007206 5.7e-127 458.4 387 64.6
CDE12G0821 Ceratophyllum demersum HOM05D005874 ORTHO05D007206 2.4e-125 453.0 387 58.7
PSO210G2121 Papaver somniferum HOM05D005874 ORTHO05D007206 1.0e-123 447.6 344 64.5
Ah.04g159940 Amaranthus hybridus HOM05D005874 ORTHO05D007206 2.9e-123 446.0 388 57.2
HPP92_003153 Vanilla planifolia HOM05D005874 ORTHO05D007206 2.9e-123 446.0 388 56.7
Dinv40230 Davidia involucrata HOM05D005874 ORTHO05D007206 2.5e-122 443.0 301 70.4
Thecc.05G296800 Theobroma cacao HOM05D005874 ORTHO05D007206 2.0e-119 433.3 336 70.8
Os03g0363900 Oryza sativa ssp. japonica HOM05D005874 ORTHO05D007206 1.3e-118 430.6 389 56.8
unitig_578.g16415 Utricularia gibba HOM05D005874 ORTHO05D007206 5.0e-115 418.7 376 55.9
Aa31LG11G9040 Aethionema arabicum HOM05D005874 ORTHO05D007206 1.5e-111 407.1 301 68.8
COL.COLO4_13564 Corchorus olitorius HOM05D005874 ORTHO05D007206 1.8e-109 400.2 290 75.2
Cfa006515 Carpinus fangiana HOM05D005874 ORTHO05D007206 7.0e-109 398.3 321 61.7
Gohir.A13G172200 Gossypium hirsutum HOM05D005874 ORTHO05D007206 1.2e-108 397.5 388 55.2
Sp3g03790 Schrenkiella parvula HOM05D005874 ORTHO05D007206 1.5e-106 390.6 264 87.1
Hund07023 Selenicereus undatus HOM05D005874 ORTHO05D007206 2.1e-105 386.7 396 51.5
EL10Ac4g09284 Beta vulgaris HOM05D005874 ORTHO05D007206 3.6e-105 386.0 388 59.0
Haze_04267 Corylus avellana HOM05D005874 ORTHO05D007206 4.7e-105 385.6 385 54.0
Zm00001eb394310 Zea mays HOM05D005874 ORTHO05D007206 1.5e-103 380.6 391 51.4
Peaxi162Scf00071g00714 Petunia axillaris HOM05D005874 ORTHO05D007206 2.0e-103 380.2 385 53.0
Manes.08G125000 Manihot esculenta HOM05D005874 ORTHO05D007206 2.8e-102 376.3 261 74.7
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 2.4e-101 373.2 324 58.6
Sed0024795 Sechium edule HOM05D005083 ORTHO05D006310 4.1e-101 372.5 259 67.6
Potri.005G041000 Populus trichocarpa HOM05D005874 ORTHO05D007206 2.3e-99 366.7 259 74.5
Sabra05G0040000 Salix brachista HOM05D005874 ORTHO05D007206 2.1e-97 360.1 467 45.4
SGA_v2.0_scaffold21G09411 Striga asiatica HOM05D005874 ORTHO05D007206 1.2e-95 354.4 371 52.8
Lj9A677G37 Lonicera japonica HOM05D005874 ORTHO05D007206 5.4e-93 345.5 340 59.7
Nitab4.5_0005924g0020 Nicotiana tabacum HOM05D005874 ORTHO05D007206 4.4e-87 325.9 343 53.6
Nn4g26084 Nelumbo nucifera HOM05D005874 ORTHO05D007206 3.2e-85 319.7 288 57.6
Atru.chr2.564 Acer truncatum HOM05D005874 ORTHO05D007206 1.1e-80 304.7 299 53.5
SEGI_36862 Sequoiadendron giganteum HOM05D005874 ORTHO05D007206 1.3e-75 287.7 315 48.9
Mapoly0004s0142 Marchantia polymorpha HOM05D005874 ORTHO05D007206 3.9e-75 286.2 394 42.6
Lj9A680G39 Lonicera japonica HOM05D005874 ORTHO05D007206 1.1e-66 258.1 209 61.7
SMO356G0262 Selaginella moellendorffii HOM05D005874 ORTHO05D007206 4.9e-62 242.7 298 45.3
CBR_g48996 Chara braunii HOM05D000019 ORTHO05D001702 8.1e-57 225.3 323 45.8
Pp3c9_17640 Physcomitrium patens HOM05D005874 ORTHO05D007206 9.0e-56 221.9 314 46.5
QL03p003187 Quercus lobata HOM05D005874 ORTHO05D007206 2.0e-55 220.7 248 52.0
AUR62000904 Chenopodium quinoa HOM05D005874 ORTHO05D007206 2.3e-51 207.2 184 60.3
AagrBONN_evm.TU.Sc2ySwM_362.837 Anthoceros agrestis HOM05D005874 ORTHO05D007206 3.1e-48 196.8 206 45.1
AUR62005071 Chenopodium quinoa HOM05D005874 ORTHO05D007206 4.8e-41 172.9 155 58.7
Ca_09385_v3 Cicer arietinum L. HOM05D005874 ORTHO05D007206 1.0e-38 165.2 138 61.6
Cre02.g090100 Chlamydomonas reinhardtii HOM05D005874 ORTHO05D007206 4.8e-33 146.4 389 30.8
FAN14G2574 Fragaria x ananassa HOM05D005874 ORTHO05D007206 5.3e-32 142.9 134 58.2
Duzib192G0784 Durio zibethinus HOM05D005874 ORTHO05D007206 3.4e-31 140.2 151 52.3
Duzib192G0912 Durio zibethinus HOM05D005874 ORTHO05D007206 6.5e-30 136.0 146 52.7
Duzib192G0855 Durio zibethinus HOM05D005874 ORTHO05D007206 3.2e-29 133.7 147 52.4
BolC4t23058H Brassica oleracea HOM05D008292 ORTHO05D003352 1.3e-27 128.3 83 73.5
C04p14840 Brassica napus HOM05D005874 ORTHO05D007206 1.8e-27 127.9 83 72.3
BcaC02g11489 Brassica carinata HOM05D005874 ORTHO05D007206 2.3e-27 127.5 83 71.1
Gorai.004G244300 Gossypium raimondii HOM05D005874 ORTHO05D007206 8.7e-27 125.6 149 50.3
Nitab4.5_0000176g0130 Nicotiana tabacum HOM05D005874 ORTHO05D007206 1.3e-25 121.7 81 66.7
Nitab4.5_0005924g0010 Nicotiana tabacum HOM05D005874 ORTHO05D007206 3.7e-25 120.2 81 65.4
MCO05G448 Micromonas commoda HOM05D005874 ORTHO05D007206 3.1e-24 117.1 284 29.2
Duzib192G0979 Durio zibethinus HOM05D005874 ORTHO05D007206 1.0e-22 112.1 101 59.4
C02p36570 Brassica napus HOM05D005874 ORTHO05D007206 5.1e-19 99.8 63 69.8
Nitab4.5_0000176g0140 Nicotiana tabacum HOM05D005874 ORTHO05D007206 5.1e-19 99.8 58 81.0
PRCOL_00005730 Prasinoderma coloniale HOM05D005874 ORTHO05D007206 1.8e-16 91.3 386 25.9
Duzib177G0334 Durio zibethinus HOM05D000092 ORTHO05D000042 2.6e-10 70.9 131 35.9
arahy.Tifrunner.gnm1.ann1.LT36IY Arachis hypogaea HOM05D010413 ORTHO05D014444 3.1e-08 63.9 42 61.9
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 7.0e-08 62.8 42 61.9
arahy.Tifrunner.gnm1.ann1.IHLS5N Arachis hypogaea HOM05D010413 ORTHO05D014444 7.0e-08 62.8 42 61.9
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 1.2e-07 62.0 41 63.4
arahy.Tifrunner.gnm1.ann1.M9QEPL Arachis hypogaea HOM05D010413 ORTHO05D002299 2.0e-07 61.2 42 59.5
arahy.Tifrunner.gnm1.ann1.J0URVC Arachis hypogaea HOM05D010413 ORTHO05D014444 4.5e-07 60.1 41 61.0
arahy.Tifrunner.gnm1.ann1.L111E7 Arachis hypogaea HOM05D010413 ORTHO05D014444 5.9e-07 59.7 42 59.5
arahy.Tifrunner.gnm1.ann1.MPAX92 Arachis hypogaea HOM05D010413 ORTHO05D014444 5.9e-07 59.7 42 59.5
arahy.Tifrunner.gnm1.ann1.6EF6C9 Arachis hypogaea HOM05D010413 ORTHO05D014444 7.7e-07 59.3 41 61.0
arahy.Tifrunner.gnm1.ann1.ME0VC2 Arachis hypogaea HOM05D010413 ORTHO05D085118 1.0e-06 58.9 42 59.5
arahy.Tifrunner.gnm1.ann1.M7HUWS Arachis hypogaea HOM05D002233 ORTHO05D002299 1.3e-06 58.5 42 57.1
arahy.Tifrunner.gnm1.ann1.FWSD6F Arachis hypogaea HOM05D010413 ORTHO05D019779 2.9e-06 57.4 42 57.1
arahy.Tifrunner.gnm1.ann1.UH56EU Arachis hypogaea HOM05D002233 ORTHO05D002299 2.9e-06 57.4 42 57.1
arahy.Tifrunner.gnm1.ann1.T67Q9P Arachis hypogaea HOM05D010413 ORTHO05D014444 5.0e-06 56.6 40 57.5
arahy.Tifrunner.gnm1.ann1.QTEC4T Arachis hypogaea HOM05D010413 ORTHO05D014444 6.5e-06 56.2 42 54.8


User provided reference genes

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