Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 1.5e-234 815.8 412 100.0
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 2.4e-200 702.2 412 88.6
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 5.2e-200 701.0 412 88.3
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 6.4e-198 694.1 412 88.1
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 4.6e-196 688.0 412 87.4
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 1.1e-186 656.8 415 84.1
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 1.9e-186 656.0 415 84.1
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 4.3e-186 654.8 415 83.9
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 1.4e-184 649.8 413 83.8
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 1.4e-184 649.8 398 85.7
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 1.8e-184 649.4 406 84.2
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 2.4e-184 649.0 406 84.2
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 9.0e-184 647.1 398 85.7
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 1.6e-180 636.3 415 82.7
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 7.4e-178 627.5 359 91.1
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 9.3e-165 583.9 419 75.4
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 9.7e-154 547.4 345 83.8
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 3.0e-139 499.2 386 68.9
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 5.2e-139 498.4 429 64.3
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 1.1e-138 497.3 399 66.4
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.7e-138 495.0 390 67.7
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 7.5e-138 494.6 390 67.4
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 1.7e-137 493.4 399 65.7
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 1.1e-136 490.7 397 65.7
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 1.4e-136 490.3 415 62.9
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 1.8e-136 490.0 388 66.0
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 3.1e-136 489.2 409 64.3
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 4.1e-136 488.8 399 65.2
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 1.6e-135 486.9 423 63.4
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 3.5e-135 485.7 415 62.9
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 5.9e-135 485.0 406 64.0
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 5.9e-135 485.0 396 65.2
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 1.3e-134 483.8 416 63.7
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 2.2e-134 483.0 397 65.0
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 2.9e-134 482.6 427 61.8
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 7.2e-133 478.0 400 63.5
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 1.6e-132 476.9 420 61.4
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 5.2e-131 471.9 398 62.1
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 6.8e-131 471.5 363 67.8
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 2.6e-130 469.5 419 60.1
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 9.8e-130 467.6 404 62.6
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.1e-128 464.2 427 58.5
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 1.4e-128 463.8 416 61.8
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 4.1e-128 462.2 419 58.5
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 7.0e-128 461.5 419 58.2
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 2.7e-127 459.5 457 55.4
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 4.5e-127 458.8 396 61.9
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 1.7e-126 456.8 398 61.6
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 1.7e-126 456.8 395 61.8
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 6.5e-126 454.9 396 60.6
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 2.5e-125 453.0 390 61.0
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 3.2e-125 452.6 472 54.0
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 9.4e-125 451.1 394 60.4
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 2.1e-124 449.9 393 61.8
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 4.7e-124 448.7 401 58.9
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 8.0e-124 448.0 412 58.3
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 1.4e-123 447.2 338 71.3
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 8.8e-123 444.5 397 59.4
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 8.8e-123 444.5 412 57.8
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 1.5e-122 443.7 426 58.0
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 2.0e-122 443.4 359 68.0
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 2.6e-122 443.0 396 60.1
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 2.6e-122 443.0 397 59.2
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 4.4e-122 442.2 393 59.5
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 4.4e-122 442.2 399 60.4
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 2.8e-121 439.5 425 58.1
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 3.1e-120 436.0 416 57.7
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 7.0e-120 434.9 397 58.4
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 2.0e-119 433.3 411 57.2
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 1.0e-118 431.0 394 57.9
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 2.3e-118 429.9 411 56.7
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 5.0e-118 428.7 419 56.6
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 2.1e-116 423.3 389 57.3
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 1.0e-115 421.0 419 56.8
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 1.4e-115 420.6 400 59.2
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.2e-115 418.7 325 70.8
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 6.8e-115 418.3 398 58.8
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 2.0e-114 416.8 345 62.6
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 9.8e-114 414.5 416 55.5
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 2.2e-113 413.3 394 57.4
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 8.3e-113 411.4 337 64.4
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.1e-112 411.0 409 55.0
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 7.0e-112 408.3 406 57.1
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 9.2e-112 407.9 383 56.9
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 1.2e-111 407.5 356 60.4
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 7.3e-109 398.3 448 53.1
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 1.2e-108 397.5 448 51.1
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.2e-108 397.5 402 53.5
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 1.5e-106 390.6 413 54.5
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 3.4e-106 389.4 328 61.9
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 5.8e-106 388.7 439 52.4
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 7.5e-106 388.3 368 56.5
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 3.2e-104 382.9 409 55.7
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 1.2e-103 380.9 433 51.7
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 3.9e-102 375.9 315 64.8
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 5.6e-101 372.1 402 51.0
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 1.2e-100 370.9 398 52.3
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 1.8e-99 367.1 311 63.7
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.4e-98 362.5 280 71.1
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 2.2e-97 360.1 405 53.3
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.9e-96 357.1 279 70.3
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 3.2e-96 356.3 297 63.6
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.5e-93 346.7 278 69.1
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 2.5e-93 346.7 351 56.4
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 1.2e-90 337.8 324 57.1
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 1.3e-89 334.3 365 53.4
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 1.7e-89 334.0 302 60.6
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 4.1e-88 329.3 306 58.8
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 1.6e-87 327.4 454 46.3
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.0e-74 283.9 364 48.4
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 8.7e-62 241.9 208 62.0
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 1.9e-61 240.7 423 38.5
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 1.9e-56 224.2 412 38.1
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 5.3e-51 206.1 125 82.4
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 7.2e-48 195.7 409 33.7
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 2.1e-47 194.1 128 75.0
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 2.1e-47 194.1 319 40.1
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 8.2e-44 182.2 121 73.6
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 2.3e-38 164.1 106 85.8
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 1.3e-25 121.7 88 72.7
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 8.8e-22 109.0 101 60.4
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 8.2e-20 102.4 93 59.1
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 8.2e-20 102.4 74 70.3
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 5.5e-16 89.7 115 41.7
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 6.8e-14 82.8 100 45.0
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 2.6e-13 80.9 152 35.5
CBR_g10855 Chara braunii HOM05D005892 ORTHO05D007364 1.0e-09 68.9 169 31.4
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 1.9e-08 64.7 101 38.6


User provided reference genes

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