Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10020805m.g Eutrema salsugineum HOM05D006391 ORTHO05D007767 1.2e-220 769.6 422 100.0
AT3G04560 Arabidopsis thaliana HOM05D006391 ORTHO05D007767 2.1e-188 662.5 423 88.2
AL3G14580 Arabidopsis lyrata HOM05D006391 ORTHO05D007767 2.4e-184 649.0 423 86.3
Sp3g03400 Schrenkiella parvula HOM05D006391 ORTHO05D007767 2.1e-180 636.0 428 83.9
CARHR078730 Cardamine hirsuta HOM05D006391 ORTHO05D007767 4.0e-179 631.7 426 82.4
BolC5t34924H Brassica oleracea HOM05D006391 ORTHO05D007767 6.8e-179 630.9 423 84.9
Aa31LG5G14980 Aethionema arabicum HOM05D006391 ORTHO05D007767 1.7e-174 616.3 427 80.3
Carub.0003s0371 Capsella rubella HOM05D006391 ORTHO05D007767 2.3e-174 615.9 427 83.1
BcaC05g30188 Brassica carinata HOM05D006391 ORTHO05D007767 1.1e-173 613.6 423 82.5
BraA05t23038Z Brassica rapa HOM05D006391 ORTHO05D007767 9.5e-173 610.5 423 82.7
C05p62710 Brassica napus HOM05D006391 ORTHO05D007767 4.7e-164 581.6 422 80.1
BcaC05g29933 Brassica carinata HOM05D006391 ORTHO05D007767 1.8e-163 579.7 422 79.9
A05p42930 Brassica napus HOM05D006391 ORTHO05D007767 3.0e-158 562.4 422 78.2
THA.LOC104827288 Tarenaya hassleriana HOM05D006391 ORTHO05D007767 3.9e-142 508.8 427 69.6
Cfa006327 Carpinus fangiana HOM05D006391 ORTHO05D007767 1.7e-129 466.8 435 61.4
CANSAT54G0018 Cannabis sativa HOM05D006391 ORTHO05D007767 2.5e-128 463.0 428 61.9
COL.COLO4_15424 Corchorus olitorius HOM05D006391 ORTHO05D007767 3.6e-127 459.1 433 60.3
Gohir.A11G251400 Gossypium hirsutum HOM05D006391 ORTHO05D007767 1.4e-126 457.2 436 60.1
CiPaw.07G078100 Carya illinoinensis HOM05D006391 ORTHO05D007767 3.9e-126 455.7 432 61.1
Gorai.007G280500 Gossypium raimondii HOM05D006391 ORTHO05D007767 2.8e-124 449.5 438 58.7
Gohir.D11G261800 Gossypium hirsutum HOM05D006391 ORTHO05D007767 3.1e-123 446.0 438 58.9
Thecc.05G276300 Theobroma cacao HOM05D006391 ORTHO05D007767 4.1e-123 445.7 433 59.1
Duzib177G0389 Durio zibethinus HOM05D006391 ORTHO05D007767 5.3e-123 445.3 438 58.9
Ciclev10020524m.g Citrus clementina HOM05D006391 ORTHO05D007767 5.9e-122 441.8 422 58.8
Atru.chr2.892 Acer truncatum HOM05D006391 ORTHO05D007767 6.5e-121 438.3 426 59.2
Nn1g02693 Nelumbo nucifera HOM05D006391 ORTHO05D007767 6.5e-121 438.3 424 58.0
Potri.013G044600 Populus trichocarpa HOM05D006391 ORTHO05D007767 6.5e-121 438.3 428 58.6
TWI56G1126 Tripterygium wilfordii HOM05D006391 ORTHO05D007767 6.5e-121 438.3 426 59.6
Peaxi162Scf00120g00213 Petunia axillaris HOM05D006391 ORTHO05D007767 2.5e-120 436.4 426 58.2
Manes.08G137500 Manihot esculenta HOM05D006391 ORTHO05D007767 3.2e-120 436.0 432 58.8
Sabra13G0041000 Salix brachista HOM05D006391 ORTHO05D007767 3.6e-119 432.6 431 58.7
Prupe.6G348300 Prunus persica HOM05D006391 ORTHO05D007767 7.9e-119 431.4 449 55.9
Ca_10006_v3 Cicer arietinum L. HOM05D006391 ORTHO05D007767 1.4e-118 430.6 432 58.3
CsaV3_1G045530 Cucumis sativus L. HOM05D006391 ORTHO05D007767 1.4e-118 430.6 432 57.2
Glyma.20G222100 Glycine max HOM05D006391 ORTHO05D007767 1.8e-118 430.3 432 58.8
Cc02_g09040 Coffea canephora HOM05D006391 ORTHO05D007767 6.7e-118 428.3 429 57.3
Dinv14621 Davidia involucrata HOM05D006391 ORTHO05D007767 1.5e-117 427.2 426 58.9
PGR004G0019 Punica granatum HOM05D006391 ORTHO05D007767 3.3e-117 426.0 422 59.2
Eucgr.H04256 Eucalyptus grandis HOM05D006391 ORTHO05D007767 4.4e-117 425.6 436 57.8
GSVIVG01036208001 Vitis vinifera HOM05D006391 ORTHO05D007767 7.4e-117 424.9 432 55.8
Sc09g0004120 Simmondsia chinensis HOM05D006391 ORTHO05D007767 1.3e-116 424.1 438 54.3
Sopen11g002020 Solanum pennellii HOM05D006391 ORTHO05D007767 4.8e-116 422.2 426 56.8
MD12G1245500 Malus domestica HOM05D006391 ORTHO05D007767 8.2e-116 421.4 449 54.8
TAR636G3322 Trochodendron aralioides HOM05D001448 ORTHO05D005781 1.1e-115 421.0 426 56.3
MBI17_g17506_MAGBIO Magnolia biondii HOM05D006391 ORTHO05D007767 2.4e-115 419.9 424 57.5
Nitab4.5_0000856g0160 Nicotiana tabacum HOM05D006391 ORTHO05D007767 4.1e-115 419.1 434 56.5
QL03p031977 Quercus lobata HOM05D006391 ORTHO05D007767 4.1e-115 419.1 431 58.9
Medtr1g079830 Medicago truncatula HOM05D006391 ORTHO05D007767 7.0e-115 418.3 427 58.1
Phvul.L001863 Phaseolus vulgaris HOM05D006391 ORTHO05D007767 7.0e-115 418.3 432 59.5
Lj2A39G66 Lonicera japonica HOM05D006391 ORTHO05D007767 9.1e-115 417.9 384 61.5
PGSC0003DMG400028690 Solanum tuberosum HOM05D006391 ORTHO05D007767 9.1e-115 417.9 426 56.1
PSO832G3851 Papaver somniferum HOM05D006391 ORTHO05D007767 1.5e-114 417.2 428 55.8
VMungo0720G1212 Vigna mungo HOM05D006391 ORTHO05D007767 1.5e-114 417.2 431 59.6
RcHm_v2.0_Chr3g0450061 Rosa chinensis HOM05D006391 ORTHO05D007767 2.6e-114 416.4 436 58.9
Actinidia06783 Actinidia chinensis HOM05D006391 ORTHO05D007767 5.9e-114 415.2 427 56.4
Solyc11g006080.2 Solanum lycopersicum HOM05D006391 ORTHO05D007767 1.0e-113 414.5 428 55.6
Lalb_Chr21g0311261 Lupinus albus HOM05D006391 ORTHO05D007767 1.7e-113 413.7 422 55.9
Nitab4.5_0004928g0020 Nicotiana tabacum HOM05D006391 ORTHO05D007767 2.2e-113 413.3 434 56.5
Lj5g0002062 Lotus japonicus HOM05D006391 ORTHO05D007767 3.8e-113 412.5 424 57.8
Haze_04461 Corylus avellana HOM05D006391 ORTHO05D007767 5.0e-113 412.1 548 48.5
PSO210G7203 Papaver somniferum HOM05D006391 ORTHO05D007767 5.0e-113 412.1 426 55.6
AUR62004876 Chenopodium quinoa HOM05D006391 ORTHO05D007767 1.1e-112 411.0 440 54.3
TPR.G10279 Trifolium pratense HOM05D006391 ORTHO05D007767 1.4e-112 410.6 425 58.4
FAN05G3173 Fragaria x ananassa HOM05D006391 ORTHO05D007767 1.9e-112 410.2 437 57.9
FAN09G3726 Fragaria x ananassa HOM05D006391 ORTHO05D007767 1.9e-112 410.2 438 58.2
vmacro20003 Vaccinium macrocarpon HOM05D006391 ORTHO05D007767 3.2e-112 409.5 432 55.6
FAN02G0817 Fragaria x ananassa HOM05D006391 ORTHO05D007767 5.5e-112 408.7 436 58.3
FAN05G1344 Fragaria x ananassa HOM05D006391 ORTHO05D007767 7.2e-112 408.3 436 57.6
Glyma.10G167000 Glycine max HOM05D006391 ORTHO05D007767 7.2e-112 408.3 391 59.6
EL10Ac4g09055 Beta vulgaris HOM05D006391 ORTHO05D007767 6.1e-111 405.2 429 55.5
MELO3C024661.2 Cucumis melo HOM05D006391 ORTHO05D007767 1.0e-110 404.4 444 55.6
AUR62037609 Chenopodium quinoa HOM05D006391 ORTHO05D007767 1.4e-110 404.1 440 53.9
ATR0680G180 Amborella trichopoda HOM05D006391 ORTHO05D007767 8.8e-110 401.4 423 54.8
ClCG06G009350 Citrullus lanatus HOM05D006391 ORTHO05D007767 1.5e-109 400.6 340 64.1
CAN.G582.18 Capsicum annuum HOM05D006391 ORTHO05D007767 2.6e-109 399.8 385 60.8
SalBow3G3308 Salvia bowleyana HOM05D006391 ORTHO05D007767 4.4e-109 399.1 430 54.7
arahy.Tifrunner.gnm1.ann1.9EWV20 Arachis hypogaea HOM05D006391 ORTHO05D007767 2.2e-108 396.7 436 53.9
Aqoxy5G00275 Aquilegia oxysepala HOM05D006391 ORTHO05D007767 4.8e-108 395.6 427 54.1
arahy.Tifrunner.gnm1.ann1.DTTE32 Arachis hypogaea HOM05D006391 ORTHO05D007767 1.4e-107 394.0 436 53.7
HanXRQChr08g0225371 Helianthus annuus HOM05D006391 ORTHO05D007767 1.8e-107 393.7 432 53.5
DCAR_028379 Daucus carota HOM05D006391 ORTHO05D007767 2.4e-107 393.3 343 63.0
FAN14G3605 Fragaria x ananassa HOM05D006391 ORTHO05D007767 4.1e-107 392.5 438 56.4
FvH4_6g02310 Fragaria vesca HOM05D006391 ORTHO05D007767 2.0e-106 390.2 437 56.1
AUR62001083 Chenopodium quinoa HOM05D006391 ORTHO05D007767 2.6e-106 389.8 464 51.1
FAN14G5548 Fragaria x ananassa HOM05D006391 ORTHO05D007767 2.6e-106 389.8 437 55.8
Sed0026137 Sechium edule HOM05D006391 ORTHO05D007767 9.4e-104 381.3 425 53.9
Lsat_1_v5_gn_8_2721 Lactuca sativa HOM05D006391 ORTHO05D007767 1.2e-103 380.9 430 52.3
ECA233G2464 Erigeron canadensis HOM05D006391 ORTHO05D007767 1.6e-103 380.6 428 53.0
Hund22148 Selenicereus undatus HOM05D006391 ORTHO05D007767 1.0e-102 377.9 375 57.9
Migut.F00812 Erythranthe guttata HOM05D006391 ORTHO05D007767 1.4e-102 377.5 427 53.2
Rhsim05G0175400 Rhododendron simsii HOM05D006391 ORTHO05D007767 4.0e-102 375.9 443 51.0
unitig_32.g11831 Utricularia gibba HOM05D006391 ORTHO05D007767 6.7e-102 375.2 429 54.1
CSS0020771 Camellia sinensis var. sinensis HOM05D006391 ORTHO05D007767 5.7e-101 372.1 424 54.0
Sed0023982 Sechium edule HOM05D006391 ORTHO05D007767 8.2e-100 368.2 425 53.6
Sed0020342 Sechium edule HOM05D006391 ORTHO05D007767 1.8e-99 367.1 424 51.7
Ah.04g163310 Amaranthus hybridus HOM05D006391 ORTHO05D007767 2.0e-93 347.1 434 50.9
Os02g0820600 Oryza sativa ssp. japonica HOM05D006391 ORTHO05D007767 2.2e-92 343.6 427 51.3
SEGI_17356 Sequoiadendron giganteum HOM05D006391 ORTHO05D007767 1.8e-91 340.5 340 54.7
SGA_v2.0_scaffold243G44310 Striga asiatica HOM05D006391 ORTHO05D007767 5.5e-88 328.9 356 52.8
Cpa.g.sc162.14 Carica papaya HOM05D006391 ORTHO05D007767 2.8e-87 326.6 343 58.3
Zm00001eb259140 Zea mays HOM05D006391 ORTHO05D007767 3.0e-86 323.2 328 55.8
CDE04G1237 Ceratophyllum demersum HOM05D006391 ORTHO05D007767 1.9e-80 303.9 316 54.7
MD04G1228400 Malus domestica HOM05D006391 ORTHO05D007767 4.3e-80 302.8 272 60.7
Pp3c19_8680 Physcomitrium patens HOM05D006391 ORTHO05D007767 9.2e-75 285.0 421 41.1
Mapoly0044s0074 Marchantia polymorpha HOM05D006391 ORTHO05D007767 4.7e-71 272.7 349 45.8
Psat6g143040 Pisum sativum HOM05D006391 ORTHO05D007767 6.2e-71 272.3 347 50.4
HPP92_007146 Vanilla planifolia HOM05D006391 ORTHO05D007767 2.3e-70 270.4 271 53.5
SMO203G0061 Selaginella moellendorffii HOM05D006391 ORTHO05D007767 1.4e-67 261.2 336 45.8
HPP92_007142 Vanilla planifolia HOM05D006391 ORTHO05D007767 2.4e-59 233.8 324 45.1
Oeu034581.1 Olea europaea HOM05D006391 ORTHO05D007767 5.8e-53 212.6 215 55.3
CBR_g8309 Chara braunii HOM05D006391 ORTHO05D007767 2.3e-49 200.7 360 37.5
QL03p032009 Quercus lobata HOM05D006391 ORTHO05D007767 8.4e-44 182.2 125 74.4
SHI23187 Sapria himalayana HOM05D006391 ORTHO05D007767 5.4e-43 179.5 263 44.9
Oeu058337.1 Olea europaea HOM05D006391 ORTHO05D007767 3.3e-40 170.2 132 65.9
HPP92_007141 Vanilla planifolia HOM05D006391 ORTHO05D007767 5.6e-32 142.9 88 76.1
BolC3t13192H Brassica oleracea HOM05D006391 ORTHO05D007767 1.1e-30 138.7 189 48.1
BcaB04g19320 Brassica carinata HOM05D006391 ORTHO05D007767 6.0e-26 122.9 106 67.9
C03p06830 Brassica napus HOM05D006391 ORTHO05D007767 4.3e-24 116.7 200 42.5
Cre02.g105450 Chlamydomonas reinhardtii HOM05D006391 ORTHO05D007767 2.8e-23 114.0 432 25.7
MCO07G609 Micromonas commoda HOM05D006391 ORTHO05D007767 3.8e-20 103.6 340 27.1
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 5.7e-16 89.7 46 93.5
BcaC02g11594 Brassica carinata HOM05D006391 ORTHO05D007767 7.4e-16 89.4 68 69.1
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 9.7e-16 89.0 46 91.3
MD04G1228300 Malus domestica HOM05D006391 ORTHO05D007767 2.6e-13 80.9 166 39.8
PRCOL_00004538 Prasinoderma coloniale HOM05D006391 ORTHO05D007767 1.6e-10 71.6 333 24.9
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 1.1e-06 58.9 64 54.7
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 2.4e-06 57.8 64 53.1


User provided reference genes

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