Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 1.6e-247 859.0 448 100.0
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 2.1e-226 788.9 448 89.3
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 1.4e-214 749.6 448 83.9
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 4.1e-214 748.0 452 83.2
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 3.6e-210 734.9 448 84.6
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 3.6e-210 734.9 448 84.6
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 2.3e-209 732.3 444 82.9
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 3.0e-209 731.9 448 83.5
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 2.4e-206 722.2 442 83.9
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 1.5e-205 719.5 447 84.6
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 8.0e-202 707.2 448 80.8
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 7.0e-198 694.1 443 83.3
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 1.1e-190 670.2 448 75.4
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 5.0e-172 608.2 448 69.2
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 4.7e-170 601.7 448 67.9
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 2.2e-167 592.8 449 68.2
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 4.1e-166 588.6 448 67.4
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 7.0e-166 587.8 451 67.2
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 7.0e-166 587.8 451 67.2
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 1.2e-165 587.0 448 67.4
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 1.2e-165 587.0 451 67.0
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 1.5e-163 580.1 450 67.3
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 9.5e-163 577.4 451 65.9
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 3.1e-161 572.4 451 66.1
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 3.4e-160 568.9 449 66.6
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 7.0e-158 561.2 453 64.9
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 2.0e-152 543.1 393 67.9
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 3.4e-136 489.2 456 58.1
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 1.2e-133 480.7 460 58.0
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 9.6e-131 471.1 459 57.3
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.1e-130 469.9 455 54.9
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 2.8e-130 469.5 458 55.2
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 4.8e-130 468.8 448 56.7
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 6.2e-130 468.4 455 55.2
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 4.0e-129 465.7 455 54.7
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 5.3e-129 465.3 456 56.4
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 6.9e-129 464.9 468 55.8
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 9.0e-129 464.5 453 56.5
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 1.2e-128 464.2 418 57.7
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 1.2e-128 464.2 422 57.1
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.6e-128 463.0 455 54.3
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 4.5e-128 462.2 458 55.5
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 5.8e-128 461.8 453 56.5
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 7.6e-128 461.5 458 54.6
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 7.6e-128 461.5 418 59.1
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 2.9e-127 459.5 468 55.3
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 1.1e-126 457.6 441 55.6
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 3.2e-126 456.1 398 59.3
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 3.2e-126 456.1 402 58.7
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 7.1e-126 454.9 416 58.2
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 9.3e-126 454.5 464 54.7
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 6.0e-125 451.8 447 54.6
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 1.5e-123 447.2 464 54.1
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 2.5e-123 446.4 395 59.0
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 7.4e-123 444.9 446 54.0
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 4.8e-122 442.2 461 53.4
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 6.2e-122 441.8 395 58.2
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 6.2e-122 441.8 396 57.6
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 9.0e-121 438.0 452 52.4
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 9.0e-121 438.0 418 56.7
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 1.2e-120 437.6 436 55.0
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 1.2e-120 437.6 413 56.7
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 4.5e-120 435.6 455 52.3
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 6.4e-119 431.8 394 56.6
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 1.2e-117 427.6 433 53.3
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 1.6e-117 427.2 433 54.3
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 1.5e-115 420.6 447 50.6
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 1.6e-114 417.2 437 52.4
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 1.6e-114 417.2 424 54.5
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 2.6e-112 409.8 414 52.2
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 1.0e-111 407.9 451 51.4
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 1.0e-111 407.9 461 49.9
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 2.2e-111 406.8 414 51.7
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 4.2e-110 402.5 396 53.3
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 1.2e-109 401.0 458 49.6
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 6.0e-109 398.7 391 52.9
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 6.0e-109 398.7 452 50.2
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 7.9e-109 398.3 455 51.4
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 5.1e-108 395.6 447 49.9
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.1e-107 394.4 455 49.9
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 2.5e-107 393.3 393 52.4
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 3.3e-107 392.9 455 49.7
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 2.2e-106 390.2 422 51.2
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 1.4e-105 387.5 380 53.4
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 1.2e-104 384.4 458 48.0
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 1.5e-104 384.0 472 47.2
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 1.7e-103 380.6 445 49.2
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 2.2e-103 380.2 331 58.3
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 6.5e-103 378.6 388 53.1
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 2.7e-101 373.2 467 47.8
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 2.7e-101 373.2 381 54.3
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 1.0e-100 371.3 386 51.6
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 3.9e-100 369.4 416 50.2
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 1.5e-99 367.5 344 55.8
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 2.2e-98 363.6 396 49.2
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 3.7e-98 362.8 463 46.4
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 4.1e-97 359.4 455 45.7
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 2.0e-96 357.1 467 45.0
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 7.4e-91 338.6 349 52.4
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 1.7e-87 327.4 406 47.5
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 2.9e-87 326.6 350 51.7
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 3.6e-85 319.7 315 55.2
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 4.7e-85 319.3 364 49.5
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 2.6e-83 313.5 419 46.3
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 3.2e-78 296.6 458 42.8
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 1.5e-75 287.7 341 49.6
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 2.6e-75 287.0 448 40.2
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 3.7e-74 283.1 366 45.6
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 5.5e-70 269.2 358 45.5
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 3.0e-68 263.5 255 56.9
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 1.9e-62 244.2 411 36.5
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 5.2e-60 236.1 230 53.0
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 6.8e-60 235.7 230 55.2
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 8.9e-60 235.3 298 48.7
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 5.7e-59 232.6 396 38.4
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 9.8e-59 231.9 436 39.9
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 6.1e-53 212.6 219 50.2
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 1.5e-51 208.0 391 35.5
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 7.0e-49 199.1 390 34.6
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 1.2e-48 198.4 393 35.4
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 5.8e-43 179.5 395 33.7
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 8.7e-23 112.5 427 27.6
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 5.3e-20 103.2 207 33.3
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 1.9e-17 94.7 164 34.8
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 2.7e-16 90.9 70 60.0
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 1.8e-12 78.2 109 45.9
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 1.8e-12 78.2 208 27.9
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 8.4e-10 69.3 154 28.6
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 3.5e-08 63.9 70 48.6


User provided reference genes

Program Settings